Wall clock time and date at job start Sun Mar 29 2020 21:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47158 * 270.00530 * 3 2 1 5 5 H 1.48496 * 109.47117 * 150.00128 * 3 2 1 6 6 H 1.48497 * 109.46967 * 30.00317 * 3 2 1 7 7 C 1.40044 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00114 * 158.82138 * 7 2 1 9 9 C 1.46376 * 120.00018 * 338.82558 * 7 2 1 10 10 O 1.21697 * 119.99760 * 340.98684 * 9 7 2 11 11 N 1.34773 * 120.00390 * 160.98692 * 9 7 2 12 12 C 1.46921 * 120.62694 * 354.82011 * 11 9 7 13 13 C 1.52762 * 109.00667 * 233.58368 * 12 11 9 14 14 C 1.53045 * 109.38477 * 305.58587 * 13 12 11 15 15 C 1.53046 * 109.53160 * 61.24023 * 14 13 12 16 16 H 1.08994 * 109.49683 * 58.58877 * 15 14 13 17 17 C 1.50708 * 109.49273 * 178.68509 * 15 14 13 18 18 O 1.20822 * 119.99894 * 359.83540 * 17 15 14 19 19 O 1.34226 * 119.99569 * 179.83759 * 17 15 14 20 20 C 1.46926 * 120.63437 * 175.09641 * 11 9 7 21 21 H 0.97002 * 119.99951 * 174.20783 * 1 2 3 22 22 H 1.08999 * 109.59274 * 353.41582 * 12 11 9 23 23 H 1.09004 * 109.59087 * 113.84627 * 12 11 9 24 24 H 1.09002 * 109.56311 * 185.55682 * 13 12 11 25 25 H 1.09001 * 109.39160 * 65.51589 * 13 12 11 26 26 H 1.08997 * 109.45841 * 301.22215 * 14 13 12 27 27 H 1.08993 * 109.44881 * 181.25334 * 14 13 12 28 28 H 0.96701 * 116.99341 * 179.97438 * 19 17 15 29 29 H 1.08994 * 109.58791 * 246.15739 * 20 11 9 30 30 H 1.09007 * 109.58301 * 6.58572 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 3.5382 1.4402 0.7000 6 1 1.4381 2.6526 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0323 -1.2442 -0.3385 9 6 1.3493 -2.4379 0.4568 10 8 0.3495 -2.3703 1.1473 11 7 1.8509 -3.6407 0.1132 12 6 2.9885 -3.7409 -0.8111 13 6 2.6167 -4.6791 -1.9578 14 6 2.1508 -6.0202 -1.3862 15 6 0.9106 -5.8025 -0.5163 16 1 0.1220 -5.3465 -1.1147 17 6 0.4336 -7.1277 0.0200 18 8 1.0229 -8.1428 -0.2666 19 8 -0.6459 -7.1802 0.8159 20 6 1.2668 -4.8768 0.6511 21 1 -0.4850 -0.8358 -0.0848 22 1 3.2235 -2.7540 -1.2099 23 1 3.8547 -4.1395 -0.2828 24 1 3.4860 -4.8380 -2.5959 25 1 1.8121 -4.2340 -2.5432 26 1 2.9473 -6.4534 -0.7812 27 1 1.9064 -6.6980 -2.2040 28 1 -0.9140 -8.0528 1.1350 29 1 1.9896 -5.3699 1.3011 30 1 0.3659 -4.6392 1.2169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082254887.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:21 Heat of formation + Delta-G solvation = -149.546720 kcal Electronic energy + Delta-G solvation = -16095.124355 eV Core-core repulsion = 13275.404127 eV Total energy + Delta-G solvation = -2819.720228 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.42799 -38.51870 -36.33665 -35.81816 -32.61591 -32.07985 -30.95773 -26.34135 -24.78334 -23.75774 -21.75198 -20.23692 -19.20649 -17.99899 -17.35770 -16.21350 -15.85128 -15.40957 -14.56168 -13.97366 -13.84761 -13.82051 -13.36631 -13.16486 -12.63069 -12.15017 -11.87851 -11.57354 -11.49953 -11.15679 -10.88847 -10.65841 -10.51086 -10.35111 -10.24860 -10.24525 -10.00868 -8.77082 -7.80478 -7.57854 -6.80758 -4.73796 2.24740 3.11146 3.24721 3.31684 3.49048 4.11335 4.37751 4.42863 4.82350 5.02829 5.13330 5.39678 5.48417 5.53276 5.63009 5.82919 5.98376 6.09000 6.17253 6.21390 6.33337 6.46242 6.52797 6.62964 7.36737 7.83166 7.95351 7.96800 8.31848 8.79694 9.32820 10.27378 10.50265 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.007373 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.289860 B = 3796.723150 C = 4220.473595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.803 5.803 2 C 0.054 3.946 3 Si 1.074 2.926 4 H -0.281 1.281 5 H -0.279 1.279 6 H -0.277 1.277 7 C -0.616 4.616 8 H 0.072 0.928 9 C 0.558 3.442 10 O -0.619 6.619 11 N -0.636 5.636 12 C 0.119 3.881 13 C -0.134 4.134 14 C -0.098 4.098 15 C -0.096 4.096 16 H 0.110 0.890 17 C 0.490 3.510 18 O -0.523 6.523 19 O -0.510 6.510 20 C 0.131 3.869 21 H 0.301 0.699 22 H 0.098 0.902 23 H 0.044 0.956 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.405 0.595 29 H 0.048 0.952 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.782 -9.264 -3.210 10.508 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C -0.169 4.169 3 Si 0.898 3.102 4 H -0.207 1.207 5 H -0.205 1.205 6 H -0.202 1.202 7 C -0.652 4.652 8 H 0.090 0.910 9 C 0.368 3.632 10 O -0.508 6.508 11 N -0.372 5.372 12 C -0.005 4.005 13 C -0.173 4.173 14 C -0.136 4.136 15 C -0.116 4.116 16 H 0.128 0.872 17 C 0.332 3.668 18 O -0.412 6.412 19 O -0.321 6.321 20 C 0.007 3.993 21 H 0.115 0.885 22 H 0.116 0.884 23 H 0.062 0.938 24 H 0.091 0.909 25 H 0.086 0.914 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.263 0.737 29 H 0.066 0.934 30 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 3.316 -7.496 -2.985 8.723 hybrid contribution 0.063 -2.555 0.044 2.556 sum 3.379 -10.051 -2.941 11.004 Atomic orbital electron populations 1.70141 1.08261 1.34732 1.29996 1.26631 0.95795 1.03150 0.91341 0.83557 0.75356 0.73935 0.77310 1.20720 1.20459 1.20178 1.21812 1.01166 0.92433 1.49784 0.91037 1.18431 0.83031 0.81995 0.79773 1.90526 1.29540 1.86524 1.44199 1.48073 1.34796 1.04895 1.49474 1.21391 0.88478 1.00824 0.89830 1.21902 1.01603 0.95069 0.98686 1.21395 0.95670 0.97853 0.98689 1.21563 1.00002 0.90182 0.99899 0.87177 1.23612 0.76725 0.91920 0.74530 1.90673 1.56214 1.37282 1.57021 1.84639 1.45550 1.40040 1.61885 1.21033 1.00032 0.85590 0.92692 0.88468 0.88362 0.93750 0.90938 0.91414 0.91276 0.91503 0.73703 0.93401 0.88483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -23.89 13.21 55.55 0.73 -23.16 16 2 C 0.05 1.48 5.34 -17.37 -0.09 1.38 16 3 Si 1.07 23.03 29.98 -169.99 -5.10 17.94 16 4 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 5 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 6 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 7 C -0.62 -16.87 8.42 -35.63 -0.30 -17.17 16 8 H 0.07 1.80 6.35 -52.48 -0.33 1.47 16 9 C 0.56 15.40 7.21 -12.99 -0.09 15.30 16 10 O -0.62 -19.23 14.27 5.19 0.07 -19.16 16 11 N -0.64 -14.07 2.98 -174.69 -0.52 -14.59 16 12 C 0.12 2.14 6.25 -3.93 -0.02 2.11 16 13 C -0.13 -1.98 6.06 -26.83 -0.16 -2.14 16 14 C -0.10 -1.43 4.46 -26.68 -0.12 -1.55 16 15 C -0.10 -1.55 2.78 -91.65 -0.25 -1.80 16 16 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 17 C 0.49 7.39 7.63 36.01 0.27 7.66 16 18 O -0.52 -8.71 16.74 -18.75 -0.31 -9.02 16 19 O -0.51 -6.63 13.35 -39.25 -0.52 -7.15 16 20 C 0.13 2.53 5.66 -3.71 -0.02 2.51 16 21 H 0.30 9.42 6.70 -40.82 -0.27 9.14 16 22 H 0.10 1.87 5.63 -51.93 -0.29 1.58 16 23 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 25 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.07 1.00 8.13 -51.93 -0.42 0.58 16 27 H 0.07 0.90 8.07 -51.93 -0.42 0.49 16 28 H 0.40 3.17 9.10 45.56 0.41 3.58 16 29 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 30 H 0.10 2.10 6.99 -51.93 -0.36 1.74 16 LS Contribution 257.34 15.07 3.88 3.88 Total: -1.00 -34.04 257.34 -5.16 -39.20 By element: Atomic # 1 Polarization: 8.36 SS G_CDS: -2.60 Total: 5.76 kcal Atomic # 6 Polarization: 7.10 SS G_CDS: -0.79 Total: 6.31 kcal Atomic # 7 Polarization: -37.96 SS G_CDS: 0.21 Total: -37.75 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -0.76 Total: -35.33 kcal Atomic # 14 Polarization: 23.03 SS G_CDS: -5.10 Total: 17.94 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -34.04 -5.16 -39.20 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254887.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.349 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds