Wall clock time and date at job start Sun Mar 29 2020 21:55:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30670 * 1 3 3 Si 1.86805 * 119.99905 * 2 1 4 4 H 1.48497 * 109.47158 * 270.00530 * 3 2 1 5 5 H 1.48496 * 109.47117 * 150.00128 * 3 2 1 6 6 H 1.48497 * 109.46967 * 30.00317 * 3 2 1 7 7 C 1.40044 * 120.00314 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00114 * 158.82138 * 7 2 1 9 9 C 1.46376 * 120.00018 * 338.82558 * 7 2 1 10 10 O 1.21697 * 119.99760 * 340.98684 * 9 7 2 11 11 N 1.34773 * 120.00390 * 160.98692 * 9 7 2 12 12 C 1.46921 * 120.62694 * 354.82011 * 11 9 7 13 13 C 1.52762 * 109.00667 * 233.58368 * 12 11 9 14 14 C 1.53045 * 109.38477 * 305.58587 * 13 12 11 15 15 C 1.53046 * 109.53160 * 61.24023 * 14 13 12 16 16 H 1.08994 * 109.49683 * 58.58877 * 15 14 13 17 17 C 1.50708 * 109.49273 * 178.68509 * 15 14 13 18 18 O 1.20822 * 119.99894 * 359.83540 * 17 15 14 19 19 O 1.34226 * 119.99569 * 179.83759 * 17 15 14 20 20 C 1.46926 * 120.63437 * 175.09641 * 11 9 7 21 21 H 0.97002 * 119.99951 * 174.20783 * 1 2 3 22 22 H 1.08999 * 109.59274 * 353.41582 * 12 11 9 23 23 H 1.09004 * 109.59087 * 113.84627 * 12 11 9 24 24 H 1.09002 * 109.56311 * 185.55682 * 13 12 11 25 25 H 1.09001 * 109.39160 * 65.51589 * 13 12 11 26 26 H 1.08997 * 109.45841 * 301.22215 * 14 13 12 27 27 H 1.08993 * 109.44881 * 181.25334 * 14 13 12 28 28 H 0.96701 * 116.99341 * 179.97438 * 19 17 15 29 29 H 1.08994 * 109.58791 * 246.15739 * 20 11 9 30 30 H 1.09007 * 109.58301 * 6.58572 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4881 2.0465 -1.4000 5 1 3.5382 1.4402 0.7000 6 1 1.4381 2.6526 0.7001 7 6 2.0070 -1.2128 -0.0005 8 1 3.0323 -1.2442 -0.3385 9 6 1.3493 -2.4379 0.4568 10 8 0.3495 -2.3703 1.1473 11 7 1.8509 -3.6407 0.1132 12 6 2.9885 -3.7409 -0.8111 13 6 2.6167 -4.6791 -1.9578 14 6 2.1508 -6.0202 -1.3862 15 6 0.9106 -5.8025 -0.5163 16 1 0.1220 -5.3465 -1.1147 17 6 0.4336 -7.1277 0.0200 18 8 1.0229 -8.1428 -0.2666 19 8 -0.6459 -7.1802 0.8159 20 6 1.2668 -4.8768 0.6511 21 1 -0.4850 -0.8358 -0.0848 22 1 3.2235 -2.7540 -1.2099 23 1 3.8547 -4.1395 -0.2828 24 1 3.4860 -4.8380 -2.5959 25 1 1.8121 -4.2340 -2.5432 26 1 2.9473 -6.4534 -0.7812 27 1 1.9064 -6.6980 -2.2040 28 1 -0.9140 -8.0528 1.1350 29 1 1.9896 -5.3699 1.3011 30 1 0.3659 -4.6392 1.2169 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082254887.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:21 Heat of formation + Delta-G solvation = -174.598097 kcal Electronic energy + Delta-G solvation = -16096.210664 eV Core-core repulsion = 13275.404127 eV Total energy + Delta-G solvation = -2820.806537 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.68858 -40.21973 -37.96243 -37.15835 -34.70273 -33.70463 -32.40447 -28.32103 -26.17064 -25.42911 -23.09232 -21.88161 -20.78468 -19.28787 -19.00546 -17.74924 -17.27866 -17.05926 -16.28424 -15.56437 -15.47414 -15.18381 -14.90538 -14.60832 -14.26029 -13.78707 -13.54026 -13.37408 -12.69442 -12.60211 -12.52704 -12.11362 -11.95593 -11.90887 -11.85877 -11.62335 -11.60104 -10.81819 -9.94127 -9.40278 -8.95549 -6.91261 1.02009 1.53817 1.59780 1.85589 1.97625 2.32257 2.43442 2.72218 3.34974 3.54504 3.74211 3.87853 4.10883 4.18487 4.39675 4.55270 4.56863 4.72954 4.85676 4.92495 4.99266 5.07312 5.34470 5.49447 5.55811 5.73272 6.05466 6.14912 6.76126 6.91118 7.31155 8.17171 8.28860 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.045869 B = 0.007373 C = 0.006633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.289860 B = 3796.723150 C = 4220.473595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.005 3.995 3 Si 1.130 2.870 4 H -0.254 1.254 5 H -0.260 1.260 6 H -0.281 1.281 7 C -0.635 4.635 8 H 0.091 0.909 9 C 0.542 3.458 10 O -0.667 6.667 11 N -0.638 5.638 12 C 0.111 3.889 13 C -0.124 4.124 14 C -0.092 4.092 15 C -0.092 4.092 16 H 0.101 0.899 17 C 0.500 3.500 18 O -0.535 6.535 19 O -0.513 6.513 20 C 0.132 3.868 21 H 0.278 0.722 22 H 0.085 0.915 23 H 0.067 0.933 24 H 0.110 0.890 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.084 0.916 28 H 0.429 0.571 29 H 0.064 0.936 30 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.759 -9.932 -4.157 12.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.463 5.463 2 C -0.210 4.210 3 Si 0.946 3.054 4 H -0.178 1.178 5 H -0.184 1.184 6 H -0.206 1.206 7 C -0.670 4.670 8 H 0.109 0.891 9 C 0.351 3.649 10 O -0.559 6.559 11 N -0.372 5.372 12 C -0.011 4.011 13 C -0.162 4.162 14 C -0.130 4.130 15 C -0.112 4.112 16 H 0.119 0.881 17 C 0.343 3.657 18 O -0.425 6.425 19 O -0.326 6.326 20 C 0.008 3.992 21 H 0.089 0.911 22 H 0.103 0.897 23 H 0.085 0.915 24 H 0.128 0.872 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.102 0.898 28 H 0.291 0.709 29 H 0.083 0.917 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.314 -8.243 -3.955 10.575 hybrid contribution -0.563 -2.476 0.388 2.568 sum 4.752 -10.719 -3.567 12.256 Atomic orbital electron populations 1.70293 1.09578 1.33127 1.33263 1.28486 0.95716 1.07499 0.89335 0.82897 0.74461 0.69017 0.78984 1.17789 1.18373 1.20613 1.22222 1.02121 0.92923 1.49753 0.89074 1.18741 0.82637 0.84001 0.79491 1.90483 1.31450 1.87759 1.46236 1.47964 1.35477 1.04322 1.49471 1.21656 0.87734 1.01367 0.90381 1.21844 1.02730 0.94150 0.97515 1.21388 0.94761 0.97918 0.98888 1.21448 1.00904 0.90159 0.98736 0.88108 1.23192 0.76944 0.91059 0.74495 1.90674 1.56781 1.37434 1.57606 1.84592 1.44644 1.42152 1.61237 1.21055 0.98971 0.85179 0.94016 0.91064 0.89657 0.91470 0.87186 0.92687 0.90520 0.89764 0.70940 0.91745 0.91690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -51.22 13.21 21.83 0.29 -50.93 16 2 C 0.00 0.26 5.34 85.30 0.46 0.72 16 3 Si 1.13 45.54 29.98 68.60 2.06 47.59 16 4 H -0.25 -9.07 7.11 99.48 0.71 -8.36 16 5 H -0.26 -9.55 7.11 99.48 0.71 -8.85 16 6 H -0.28 -11.43 7.11 99.48 0.71 -10.73 16 7 C -0.63 -35.00 8.42 24.83 0.21 -34.79 16 8 H 0.09 4.52 6.35 -2.91 -0.02 4.50 16 9 C 0.54 30.71 7.21 86.36 0.62 31.33 16 10 O -0.67 -43.34 14.27 -4.34 -0.06 -43.40 16 11 N -0.64 -28.24 2.98 -824.83 -2.46 -30.69 16 12 C 0.11 3.80 6.25 86.22 0.54 4.34 16 13 C -0.12 -3.32 6.06 30.53 0.19 -3.14 16 14 C -0.09 -2.41 4.46 30.62 0.14 -2.27 16 15 C -0.09 -2.86 2.78 -11.46 -0.03 -2.90 16 16 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 17 C 0.50 14.24 7.63 71.24 0.54 14.78 16 18 O -0.53 -16.49 16.74 21.98 0.37 -16.12 16 19 O -0.51 -12.62 13.35 -51.38 -0.69 -13.31 16 20 C 0.13 5.08 5.66 86.36 0.49 5.57 16 21 H 0.28 18.25 6.70 -92.71 -0.62 17.63 16 22 H 0.09 3.14 5.63 -2.39 -0.01 3.12 16 23 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 24 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.08 1.94 8.13 -2.39 -0.02 1.92 16 27 H 0.08 1.98 8.07 -2.39 -0.02 1.96 16 28 H 0.43 5.85 9.10 -74.06 -0.67 5.18 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.92 6.99 -2.38 -0.02 2.90 16 Total: -1.00 -75.93 257.34 3.30 -72.63 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: 0.64 Total: 20.57 kcal Atomic # 6 Polarization: 10.50 SS G_CDS: 3.15 Total: 13.65 kcal Atomic # 7 Polarization: -79.46 SS G_CDS: -2.17 Total: -81.62 kcal Atomic # 8 Polarization: -72.44 SS G_CDS: -0.38 Total: -72.82 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.06 Total: 47.59 kcal Total: -75.93 3.30 -72.63 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082254887.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.971 kcal (2) G-P(sol) polarization free energy of solvation -75.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds