Wall clock time and date at job start Sun Mar 29 2020 21:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46808 * 240.00022 * 3 2 1 5 5 H 1.48498 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47368 * 119.99895 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46879 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.46984 * 180.02562 * 10 9 7 12 12 C 1.35930 * 117.00270 * 179.97438 * 11 10 9 13 13 C 1.39155 * 120.45930 * 179.97438 * 12 11 10 14 14 C 1.38495 * 118.39045 * 180.02562 * 13 12 11 15 15 C 1.38411 * 119.20748 * 359.97438 * 14 13 12 16 16 Cl 1.73597 * 119.57288 * 179.97438 * 15 14 13 17 17 N 1.31928 * 120.85231 * 359.97438 * 15 14 13 18 18 C 1.31878 * 121.76150 * 0.02562 * 17 15 14 19 19 H 0.96997 * 119.99934 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46884 * 59.99749 * 9 7 2 21 21 H 1.09002 * 109.47117 * 299.99716 * 9 7 2 22 22 H 1.08991 * 109.47156 * 59.99893 * 10 9 7 23 23 H 1.09002 * 109.47080 * 299.99820 * 10 9 7 24 24 H 1.07997 * 120.80764 * 0.02562 * 13 12 11 25 25 H 1.08001 * 120.39425 * 179.72922 * 14 13 12 26 26 H 1.07994 * 119.64507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5310 -4.8996 -0.0001 12 6 2.2713 -6.0397 -0.0007 13 6 1.6495 -7.2846 -0.0008 14 6 2.4452 -8.4181 -0.0009 15 6 3.8221 -8.2768 -0.0014 16 17 4.8285 -9.6912 -0.0009 17 7 4.3795 -7.0810 -0.0024 18 6 3.6564 -5.9781 -0.0023 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5568 0.8903 22 1 2.8720 -3.6043 0.8904 23 1 2.8721 -3.6043 -0.8895 24 1 0.5725 -7.3649 -0.0007 25 1 1.9967 -9.4006 0.0035 26 1 4.1485 -5.0168 -0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087543211.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:10 Heat of formation + Delta-G solvation = -23.302175 kcal Electronic energy + Delta-G solvation = -12664.487770 eV Core-core repulsion = 10155.117986 eV Total energy + Delta-G solvation = -2509.369784 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.54230 -38.05120 -36.49611 -33.54386 -32.53791 -30.70513 -29.48534 -25.42662 -23.79396 -22.90027 -21.01791 -18.21579 -17.06230 -16.76175 -16.12523 -15.72537 -14.66456 -14.55792 -14.18415 -13.60007 -13.15800 -12.67030 -12.35856 -12.34212 -11.39395 -11.36598 -11.18576 -10.95521 -10.74167 -10.19531 -9.84793 -9.73752 -9.56783 -9.38039 -8.51996 -8.23408 -6.17192 -4.22641 0.95360 1.14384 1.82603 3.25218 3.29415 3.30710 3.49170 3.61674 4.34191 4.47840 4.63135 4.83337 5.12830 5.19490 5.40778 5.66170 5.78041 5.84474 5.98300 6.30507 6.49245 7.29739 7.51687 7.59090 7.68611 7.84924 8.13736 8.82467 9.42396 10.94155 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.072343 B = 0.004500 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.951111 B = 6221.082139 C = 6587.587590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.062 3.938 3 Si 0.900 3.100 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.530 4.530 8 H 0.059 0.941 9 C 0.027 3.973 10 C 0.058 3.942 11 O -0.303 6.303 12 C 0.103 3.897 13 C -0.109 4.109 14 C -0.113 4.113 15 C 0.120 3.880 16 Cl -0.044 7.044 17 N -0.442 5.442 18 C 0.030 3.970 19 H 0.265 0.735 20 H 0.029 0.971 21 H 0.029 0.971 22 H 0.057 0.943 23 H 0.057 0.943 24 H 0.152 0.848 25 H 0.148 0.852 26 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.658 -15.256 0.003 15.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.141 4.141 3 Si 0.727 3.273 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.568 4.568 8 H 0.077 0.923 9 C -0.010 4.010 10 C -0.016 4.016 11 O -0.214 6.214 12 C 0.053 3.947 13 C -0.136 4.136 14 C -0.133 4.133 15 C -0.045 4.045 16 Cl -0.016 7.016 17 N -0.154 5.154 18 C -0.128 4.128 19 H 0.074 0.926 20 H 0.047 0.953 21 H 0.047 0.953 22 H 0.075 0.925 23 H 0.075 0.925 24 H 0.170 0.830 25 H 0.165 0.835 26 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 5.260 -15.130 0.002 16.018 hybrid contribution -0.111 0.834 0.000 0.841 sum 5.150 -14.296 0.003 15.196 Atomic orbital electron populations 1.69956 1.06127 1.27232 1.49347 1.24987 0.94921 0.99448 0.94749 0.86525 0.79495 0.82453 0.78793 1.20036 1.21085 1.20031 1.20912 0.93072 0.90080 1.52758 0.92275 1.19131 0.94083 0.88794 0.99041 1.23529 0.97479 0.80378 1.00200 1.86241 1.36099 1.12971 1.86112 1.20287 0.91576 0.88813 0.93979 1.20953 1.01505 0.88946 1.02158 1.21613 0.91637 1.00014 1.00080 1.21373 0.88562 0.88543 1.05986 1.98373 1.70726 1.35559 1.96966 1.66810 1.40996 0.97337 1.10238 1.22943 0.89966 0.96931 1.02998 0.92558 0.95261 0.95253 0.92514 0.92523 0.83031 0.83455 0.81196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.75 13.29 55.43 0.74 -25.01 15 2 C 0.06 1.70 5.46 -17.82 -0.10 1.60 15 3 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 15 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 5 H -0.29 -6.54 7.11 56.52 0.40 -6.13 15 6 H -0.27 -6.23 7.11 56.52 0.40 -5.83 15 7 C -0.53 -14.23 9.11 -34.44 -0.31 -14.54 15 8 H 0.06 1.51 7.74 -52.49 -0.41 1.10 15 9 C 0.03 0.66 5.34 -27.88 -0.15 0.51 15 10 C 0.06 1.13 4.69 37.16 0.17 1.31 15 11 O -0.30 -5.60 10.15 -19.52 -0.20 -5.79 15 12 C 0.10 1.62 6.71 -39.09 -0.26 1.36 15 13 C -0.11 -1.41 10.13 -39.15 -0.40 -1.81 15 14 C -0.11 -1.31 9.87 -39.42 -0.39 -1.70 15 15 C 0.12 1.64 7.27 -17.45 -0.13 1.51 15 16 Cl -0.04 -0.52 29.10 -51.86 -1.51 -2.03 15 17 N -0.44 -6.88 10.33 -10.24 -0.11 -6.98 15 18 C 0.03 0.47 10.22 -17.38 -0.18 0.29 15 19 H 0.26 7.23 8.31 -40.82 -0.34 6.89 15 20 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 21 H 0.03 0.77 8.14 -51.93 -0.42 0.35 15 22 H 0.06 1.05 7.68 -51.93 -0.40 0.65 15 23 H 0.06 1.04 7.67 -51.93 -0.40 0.65 15 24 H 0.15 1.64 8.06 -52.49 -0.42 1.21 15 25 H 0.15 1.23 8.06 -52.49 -0.42 0.81 15 26 H 0.17 2.46 6.32 -52.49 -0.33 2.12 15 LS Contribution 252.65 15.07 3.81 3.81 Total: -1.00 -28.99 252.65 -6.39 -35.38 By element: Atomic # 1 Polarization: -1.30 SS G_CDS: -2.36 Total: -3.66 kcal Atomic # 6 Polarization: -9.73 SS G_CDS: -1.74 Total: -11.47 kcal Atomic # 7 Polarization: -32.63 SS G_CDS: 0.63 Total: -32.00 kcal Atomic # 8 Polarization: -5.60 SS G_CDS: -0.20 Total: -5.79 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.51 Total: -2.03 kcal Total LS contribution 3.81 Total: 3.81 kcal Total: -28.99 -6.39 -35.38 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087543211.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.079 kcal (2) G-P(sol) polarization free energy of solvation -28.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.912 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.381 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds