Wall clock time and date at job start Sun Mar 29 2020 21:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99938 * 2 1 4 4 H 1.48498 * 109.46808 * 240.00022 * 3 2 1 5 5 H 1.48498 * 109.46913 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47368 * 119.99895 * 3 2 1 7 7 C 1.37880 * 120.00119 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00167 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99984 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46879 * 179.97438 * 9 7 2 11 11 O 1.42899 * 109.46984 * 180.02562 * 10 9 7 12 12 C 1.35930 * 117.00270 * 179.97438 * 11 10 9 13 13 C 1.39155 * 120.45930 * 179.97438 * 12 11 10 14 14 C 1.38495 * 118.39045 * 180.02562 * 13 12 11 15 15 C 1.38411 * 119.20748 * 359.97438 * 14 13 12 16 16 Cl 1.73597 * 119.57288 * 179.97438 * 15 14 13 17 17 N 1.31928 * 120.85231 * 359.97438 * 15 14 13 18 18 C 1.31878 * 121.76150 * 0.02562 * 17 15 14 19 19 H 0.96997 * 119.99934 * 359.97438 * 1 2 3 20 20 H 1.09002 * 109.46884 * 59.99749 * 9 7 2 21 21 H 1.09002 * 109.47117 * 299.99716 * 9 7 2 22 22 H 1.08991 * 109.47156 * 59.99893 * 10 9 7 23 23 H 1.09002 * 109.47080 * 299.99820 * 10 9 7 24 24 H 1.07997 * 120.80764 * 0.02562 * 13 12 11 25 25 H 1.08001 * 120.39425 * 179.72922 * 14 13 12 26 26 H 1.07994 * 119.64507 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6965 1.2124 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 8 1.5310 -4.8996 -0.0001 12 6 2.2713 -6.0397 -0.0007 13 6 1.6495 -7.2846 -0.0008 14 6 2.4452 -8.4181 -0.0009 15 6 3.8221 -8.2768 -0.0014 16 17 4.8285 -9.6912 -0.0009 17 7 4.3795 -7.0810 -0.0024 18 6 3.6564 -5.9781 -0.0023 19 1 -0.4850 0.8400 0.0004 20 1 0.6247 -2.5571 -0.8897 21 1 0.6241 -2.5568 0.8903 22 1 2.8720 -3.6043 0.8904 23 1 2.8721 -3.6043 -0.8895 24 1 0.5725 -7.3649 -0.0007 25 1 1.9967 -9.4006 0.0035 26 1 4.1485 -5.0168 -0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087543211.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:10 Heat of formation + Delta-G solvation = -41.197437 kcal Electronic energy + Delta-G solvation = -12665.263767 eV Core-core repulsion = 10155.117986 eV Total energy + Delta-G solvation = -2510.145781 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -41.70349 -39.34686 -37.51414 -35.50543 -33.69908 -32.35591 -30.83275 -27.19431 -25.07396 -24.13412 -22.70921 -19.55125 -18.43140 -17.94707 -17.85881 -17.14097 -16.52564 -15.64761 -15.39744 -14.91511 -14.37590 -14.26051 -13.95589 -13.75311 -13.04196 -12.82828 -12.53198 -12.47700 -12.30006 -11.77090 -11.68090 -11.45660 -10.85518 -10.67407 -10.59677 -9.42752 -8.26072 -6.39100 -0.11488 0.05571 0.79982 1.42692 1.45575 1.53443 2.12181 2.44764 2.52155 3.09008 3.40560 3.51863 3.83932 4.05100 4.24063 4.25344 4.46961 4.63292 4.73795 4.90525 5.21901 5.36578 5.48020 5.70013 6.05906 6.25416 6.57569 6.75728 7.31094 8.86422 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.072343 B = 0.004500 C = 0.004249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.951111 B = 6221.082139 C = 6587.587590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.972 3.028 4 H -0.265 1.265 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.547 4.547 8 H 0.072 0.928 9 C 0.029 3.971 10 C 0.075 3.925 11 O -0.321 6.321 12 C 0.078 3.922 13 C -0.101 4.101 14 C -0.098 4.098 15 C 0.113 3.887 16 Cl -0.028 7.028 17 N -0.466 5.466 18 C 0.023 3.977 19 H 0.266 0.734 20 H 0.002 0.998 21 H 0.002 0.998 22 H 0.068 0.932 23 H 0.068 0.932 24 H 0.174 0.826 25 H 0.187 0.813 26 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.650 -16.305 0.004 17.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.796 3.204 4 H -0.190 1.190 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.585 4.585 8 H 0.090 0.910 9 C -0.009 4.009 10 C 0.001 3.999 11 O -0.233 6.233 12 C 0.029 3.971 13 C -0.127 4.127 14 C -0.119 4.119 15 C -0.052 4.052 16 Cl 0.000 7.000 17 N -0.178 5.178 18 C -0.135 4.135 19 H 0.075 0.925 20 H 0.020 0.980 21 H 0.020 0.980 22 H 0.086 0.914 23 H 0.086 0.914 24 H 0.192 0.808 25 H 0.204 0.796 26 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 6.272 -16.202 0.003 17.374 hybrid contribution -0.416 0.958 0.000 1.045 sum 5.856 -15.244 0.003 16.330 Atomic orbital electron populations 1.70096 1.07934 1.28246 1.50585 1.25984 0.95782 1.03525 0.94251 0.85393 0.78153 0.77511 0.79370 1.18954 1.20931 1.18943 1.21383 0.93910 0.91044 1.52135 0.91025 1.18955 0.94519 0.91028 0.96356 1.23054 0.95727 0.79771 1.01299 1.86156 1.36539 1.13290 1.87322 1.20509 0.91839 0.88612 0.96157 1.21311 1.02858 0.88076 1.00437 1.21990 0.90643 1.01272 0.97955 1.21807 0.89807 0.88547 1.05033 1.98381 1.70492 1.34314 1.96819 1.66818 1.41583 0.98016 1.11357 1.22948 0.89957 0.97244 1.03342 0.92477 0.97987 0.97978 0.91391 0.91400 0.80815 0.79559 0.81099 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.02 13.29 21.45 0.28 -54.74 15 2 C 0.00 0.19 5.46 84.66 0.46 0.65 15 3 Si 0.97 42.47 29.54 68.60 2.03 44.49 15 4 H -0.26 -11.06 7.11 99.48 0.71 -10.36 15 5 H -0.28 -12.23 7.11 99.48 0.71 -11.52 15 6 H -0.26 -11.06 7.11 99.48 0.71 -10.35 15 7 C -0.55 -29.61 9.11 25.60 0.23 -29.38 15 8 H 0.07 3.60 7.74 -2.91 -0.02 3.58 15 9 C 0.03 1.47 5.34 29.85 0.16 1.63 15 10 C 0.08 2.99 4.69 71.98 0.34 3.32 15 11 O -0.32 -11.88 10.15 -92.76 -0.94 -12.82 15 12 C 0.08 2.36 6.71 22.59 0.15 2.51 15 13 C -0.10 -2.37 10.13 22.55 0.23 -2.14 15 14 C -0.10 -1.98 9.87 22.37 0.22 -1.76 15 15 C 0.11 2.83 7.27 84.72 0.62 3.45 15 16 Cl -0.03 -0.60 29.10 -2.72 -0.08 -0.68 15 17 N -0.47 -13.88 10.33 -186.32 -1.93 -15.80 15 18 C 0.02 0.68 10.22 84.78 0.87 1.55 15 19 H 0.27 14.82 8.31 -92.71 -0.77 14.05 15 20 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 21 H 0.00 0.10 8.14 -2.39 -0.02 0.08 15 22 H 0.07 2.50 7.68 -2.39 -0.02 2.48 15 23 H 0.07 2.50 7.67 -2.39 -0.02 2.48 15 24 H 0.17 3.26 8.06 -2.91 -0.02 3.23 15 25 H 0.19 2.25 8.06 -2.91 -0.02 2.23 15 26 H 0.17 4.90 6.32 -2.91 -0.02 4.88 15 Total: -1.00 -62.68 252.65 3.83 -58.85 By element: Atomic # 1 Polarization: -0.33 SS G_CDS: 1.19 Total: 0.86 kcal Atomic # 6 Polarization: -23.44 SS G_CDS: 3.28 Total: -20.16 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.64 Total: -70.54 kcal Atomic # 8 Polarization: -11.88 SS G_CDS: -0.94 Total: -12.82 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 17 Polarization: -0.60 SS G_CDS: -0.08 Total: -0.68 kcal Total: -62.68 3.83 -58.85 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087543211.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.651 kcal (2) G-P(sol) polarization free energy of solvation -62.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds