Wall clock time and date at job start Sun Mar 29 2020 21:28:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99879 * 2 1 4 4 H 1.48504 * 109.47118 * 239.99661 * 3 2 1 5 5 H 1.48504 * 109.47036 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47374 * 119.99767 * 3 2 1 7 7 C 1.37876 * 120.00351 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00449 * 180.02562 * 7 2 1 9 9 C 1.50699 * 119.99570 * 359.97438 * 7 2 1 10 10 C 1.53004 * 109.46843 * 179.97438 * 9 7 2 11 11 N 1.46504 * 109.46928 * 180.02562 * 10 9 7 12 12 C 1.34777 * 119.99854 * 179.97438 * 11 10 9 13 13 O 1.21573 * 119.99941 * 0.02562 * 12 11 10 14 14 C 1.47756 * 120.00007 * 180.27931 * 12 11 10 15 15 C 1.39348 * 124.11442 * 179.45385 * 14 12 11 16 16 N 1.30093 * 112.14298 * 179.77897 * 15 14 12 17 17 S 1.55924 * 108.75520 * 0.46219 * 16 15 14 18 18 N 1.31481 * 124.11320 * 359.74924 * 14 12 11 19 19 H 0.96996 * 120.00389 * 0.02562 * 1 2 3 20 20 H 1.09007 * 109.47199 * 60.00717 * 9 7 2 21 21 H 1.08997 * 109.47846 * 300.00091 * 9 7 2 22 22 H 1.08998 * 109.47202 * 60.00416 * 10 9 7 23 23 H 1.08997 * 109.47419 * 300.00314 * 10 9 7 24 24 H 0.97000 * 120.00410 * 0.02562 * 11 10 9 25 25 H 1.08002 * 123.92866 * 0.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1030 1.6964 -1.2125 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 7 1.5129 -4.9308 0.0020 12 6 2.1868 -6.0979 0.0013 13 8 3.4025 -6.0979 0.0008 14 6 1.4480 -7.3776 -0.0044 15 6 2.0564 -8.6311 -0.0164 16 7 1.1865 -9.5984 -0.0146 17 16 -0.2465 -8.9839 -0.0112 18 7 0.1366 -7.4719 -0.0043 19 1 -0.4850 0.8400 -0.0004 20 1 0.6241 -2.5575 -0.8881 21 1 0.6247 -2.5563 0.8919 22 1 2.8727 -3.6039 0.8909 23 1 2.8714 -3.6046 -0.8890 24 1 0.5429 -4.9308 0.0020 25 1 3.1258 -8.7822 -0.0223 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308159720.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:35 Heat of formation + Delta-G solvation = -12.096341 kcal Electronic energy + Delta-G solvation = -12734.864873 eV Core-core repulsion = 10260.317468 eV Total energy + Delta-G solvation = -2474.547405 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.15031 -40.10544 -36.68398 -35.04847 -34.46169 -31.61954 -28.66683 -26.75153 -24.21376 -22.74757 -21.47260 -20.36679 -18.88198 -18.42596 -17.22390 -16.77788 -16.52446 -16.19384 -16.15585 -14.96508 -14.76028 -14.30035 -13.29086 -13.24295 -12.92757 -12.55466 -12.50759 -12.30777 -12.21547 -12.09353 -11.71346 -11.49483 -11.12302 -10.60243 -10.31295 -10.02008 -8.23217 -6.34245 -0.66298 0.34351 0.45705 0.64264 1.43202 1.45659 1.53507 2.00521 2.08292 2.43721 3.11662 3.41358 3.71134 4.04705 4.45065 4.48176 4.48478 4.84180 5.17422 5.32459 5.46849 5.56576 5.77890 6.14613 6.44250 6.78962 7.00818 7.35255 8.88629 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.067762 B = 0.004816 C = 0.004511 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 413.110170 B = 5812.981702 C = 6205.633557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.006 3.994 3 Si 0.967 3.033 4 H -0.267 1.267 5 H -0.283 1.283 6 H -0.267 1.267 7 C -0.547 4.547 8 H 0.064 0.936 9 C 0.021 3.979 10 C 0.139 3.861 11 N -0.699 5.699 12 C 0.597 3.403 13 O -0.560 6.560 14 C -0.004 4.004 15 C 0.091 3.909 16 N -0.595 5.595 17 S 0.803 5.197 18 N -0.570 5.570 19 H 0.266 0.734 20 H 0.007 0.993 21 H 0.007 0.993 22 H 0.058 0.942 23 H 0.058 0.942 24 H 0.412 0.588 25 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.459 -17.415 -0.037 17.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.193 4.193 3 Si 0.791 3.209 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.585 4.585 8 H 0.082 0.918 9 C -0.016 4.016 10 C 0.016 3.984 11 N -0.349 5.349 12 C 0.378 3.622 13 O -0.439 6.439 14 C -0.177 4.177 15 C -0.100 4.100 16 N -0.438 5.438 17 S 0.844 5.156 18 N -0.422 5.422 19 H 0.074 0.926 20 H 0.025 0.975 21 H 0.025 0.975 22 H 0.076 0.924 23 H 0.076 0.924 24 H 0.248 0.752 25 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -2.602 -18.228 -0.036 18.413 hybrid contribution 1.370 1.828 0.005 2.285 sum -1.232 -16.400 -0.031 16.446 Atomic orbital electron populations 1.70062 1.07660 1.28084 1.50958 1.25903 0.95777 1.03220 0.94395 0.85474 0.78249 0.77967 0.79213 1.19219 1.20792 1.19213 1.21447 0.93766 0.91681 1.51614 0.91797 1.19145 0.94287 0.91892 0.96307 1.21407 0.95049 0.81099 1.00862 1.46044 1.11485 1.05406 1.71924 1.17095 0.86036 0.82302 0.76778 1.90783 1.13544 1.87269 1.52279 1.22228 0.87861 0.97307 1.10292 1.23825 1.03496 0.84479 0.98224 1.72182 1.09133 1.38055 1.24408 1.78688 1.09236 0.83810 1.43901 1.72253 1.18329 1.30589 1.21077 0.92560 0.97494 0.97488 0.92370 0.92373 0.75168 0.75687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.65 13.29 21.45 0.28 -54.37 15 2 C 0.01 0.32 5.46 84.65 0.46 0.79 15 3 Si 0.97 43.34 29.54 68.60 2.03 45.36 15 4 H -0.27 -11.56 7.11 99.48 0.71 -10.86 15 5 H -0.28 -12.37 7.11 99.48 0.71 -11.67 15 6 H -0.27 -11.56 7.11 99.48 0.71 -10.85 15 7 C -0.55 -30.30 9.11 25.60 0.23 -30.06 15 8 H 0.06 3.41 7.74 -2.91 -0.02 3.38 15 9 C 0.02 1.07 5.09 29.85 0.15 1.22 15 10 C 0.14 5.89 5.61 86.38 0.48 6.37 15 11 N -0.70 -25.38 5.55 -466.04 -2.59 -27.97 15 12 C 0.60 20.39 7.82 86.76 0.68 21.07 15 13 O -0.56 -21.74 16.81 -3.95 -0.07 -21.80 15 14 C 0.00 -0.11 6.81 41.98 0.29 0.17 15 15 C 0.09 2.05 11.22 85.22 0.96 3.00 15 16 N -0.60 -12.09 11.41 -92.44 -1.05 -13.14 15 17 S 0.80 13.20 23.69 -56.49 -1.34 11.86 15 18 N -0.57 -13.90 11.00 -80.59 -0.89 -14.79 15 19 H 0.27 14.73 8.31 -92.71 -0.77 13.96 15 20 H 0.01 0.36 8.14 -2.38 -0.02 0.34 15 21 H 0.01 0.36 8.14 -2.39 -0.02 0.34 15 22 H 0.06 2.50 8.14 -2.39 -0.02 2.48 15 23 H 0.06 2.50 8.14 -2.39 -0.02 2.48 15 24 H 0.41 14.08 8.06 -92.71 -0.75 13.33 15 25 H 0.23 4.24 8.06 -2.91 -0.02 4.21 15 Total: -1.00 -65.25 248.46 0.11 -65.14 By element: Atomic # 1 Polarization: 6.68 SS G_CDS: 0.48 Total: 7.16 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 3.25 Total: 2.55 kcal Atomic # 7 Polarization: -106.02 SS G_CDS: -4.24 Total: -110.27 kcal Atomic # 8 Polarization: -21.74 SS G_CDS: -0.07 Total: -21.80 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 13.20 SS G_CDS: -1.34 Total: 11.86 kcal Total: -65.25 0.11 -65.14 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308159720.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.042 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.139 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds