Wall clock time and date at job start Sun Mar 29 2020 21:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29415 * 125.69417 * 2 1 4 4 N 1.26404 * 116.47717 * 179.97438 * 3 2 1 5 5 C 1.29417 * 116.46934 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.68991 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.46988 * 90.02785 * 6 5 4 8 8 C 1.46895 * 111.00067 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.46970 * 325.00131 * 8 7 6 10 10 C 1.52998 * 109.47077 * 84.99898 * 8 7 6 11 11 C 1.50705 * 109.47334 * 204.99982 * 8 7 6 12 12 H 1.07997 * 119.99795 * 359.97438 * 11 8 7 13 13 C 1.37869 * 120.00051 * 179.97438 * 11 8 7 14 14 N 1.31518 * 120.00045 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99938 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47307 * 90.00474 * 15 13 11 17 17 H 1.48503 * 109.47149 * 210.00309 * 15 13 11 18 18 H 1.48503 * 109.47529 * 330.00344 * 15 13 11 19 19 S 1.71218 * 125.69662 * 179.97438 * 2 1 3 20 20 H 1.09005 * 109.47034 * 90.02124 * 1 2 3 21 21 H 1.08992 * 109.46798 * 210.01843 * 1 2 3 22 22 H 1.08993 * 109.46994 * 330.02310 * 1 2 3 23 23 H 1.09001 * 109.47038 * 210.02577 * 6 5 4 24 24 H 1.08992 * 109.47386 * 330.02299 * 6 5 4 25 25 H 1.00901 * 110.99733 * 56.04193 * 7 6 5 26 26 H 1.09006 * 109.47013 * 180.02562 * 10 8 7 27 27 H 1.09003 * 109.47263 * 299.99852 * 10 8 7 28 28 H 1.08997 * 109.47207 * 59.99966 * 10 8 7 29 29 H 0.97001 * 119.99628 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8486 0.0005 5 6 3.8936 -0.3874 0.0004 6 6 5.3233 -0.8640 0.0004 7 7 5.7876 -1.0196 1.3855 8 6 7.1804 -1.4846 1.4247 9 1 7.3597 -2.1655 0.5926 10 6 8.1223 -0.2840 1.3132 11 6 7.4339 -2.2028 2.7251 12 1 6.6398 -2.3033 3.4501 13 6 8.6795 -2.7315 2.9893 14 7 9.6467 -2.6086 2.1066 15 14 8.9938 -3.6210 4.6015 16 1 8.6897 -5.0652 4.4375 17 1 10.4180 -3.4560 4.9884 18 1 8.1237 -3.0491 5.6603 19 16 2.5061 -1.3905 0.0006 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3632 -0.8898 0.5141 22 1 -0.3633 0.8901 0.5134 23 1 5.3866 -1.8230 -0.5138 24 1 5.9495 -0.1345 -0.5129 25 1 5.1841 -1.6423 1.9013 26 1 9.1558 -0.6291 1.3418 27 1 7.9390 0.2354 0.3725 28 1 7.9430 0.3969 2.1452 29 1 10.5231 -2.9803 2.2927 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308253494.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:24 Heat of formation + Delta-G solvation = 57.839707 kcal Electronic energy + Delta-G solvation = -13167.349527 eV Core-core repulsion = 10831.667871 eV Total energy + Delta-G solvation = -2335.681656 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.10752 -36.27792 -33.54043 -32.36943 -30.09489 -27.93483 -25.76955 -25.14480 -23.54734 -19.95250 -19.68088 -19.13386 -16.70081 -15.78323 -15.23738 -14.76007 -14.18057 -13.85755 -13.76140 -13.23627 -13.04827 -12.74469 -12.31654 -11.97826 -11.31078 -10.95738 -10.86538 -10.47997 -10.32577 -10.19571 -10.12427 -9.98901 -9.60206 -9.46504 -8.90969 -8.54429 -7.48481 -6.09077 -4.16214 0.55024 1.00017 1.47390 2.71288 3.25979 3.33204 3.37191 4.06647 4.35333 4.65297 4.89267 5.18071 5.20188 5.24011 5.41727 5.48908 5.70908 5.86626 6.01902 6.79558 7.07932 7.13516 7.37545 7.70006 7.78558 8.16822 8.22929 8.49623 8.72380 8.91663 9.49995 10.97246 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.050078 B = 0.005698 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.988075 B = 4912.742051 C = 5215.175894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C -0.032 4.032 3 N -0.264 5.264 4 N -0.251 5.251 5 C 0.015 3.985 6 C 0.135 3.865 7 N -0.678 5.678 8 C 0.214 3.786 9 H 0.006 0.994 10 C -0.127 4.127 11 C -0.521 4.521 12 H 0.061 0.939 13 C 0.064 3.936 14 N -0.888 5.888 15 Si 0.898 3.102 16 H -0.281 1.281 17 H -0.285 1.285 18 H -0.273 1.273 19 S 0.152 5.848 20 H 0.087 0.913 21 H 0.082 0.918 22 H 0.091 0.909 23 H 0.049 0.951 24 H 0.101 0.899 25 H 0.332 0.668 26 H 0.083 0.917 27 H 0.007 0.993 28 H 0.034 0.966 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.694 -0.067 -5.221 15.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.312 4.312 3 N -0.102 5.102 4 N -0.088 5.088 5 C -0.265 4.265 6 C 0.001 3.999 7 N -0.311 5.311 8 C 0.107 3.893 9 H 0.023 0.977 10 C -0.185 4.185 11 C -0.560 4.560 12 H 0.079 0.921 13 C -0.139 4.139 14 N -0.527 5.527 15 Si 0.726 3.274 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.198 1.198 19 S 0.395 5.605 20 H 0.105 0.895 21 H 0.101 0.899 22 H 0.109 0.891 23 H 0.067 0.933 24 H 0.119 0.881 25 H 0.149 0.851 26 H 0.101 0.899 27 H 0.026 0.974 28 H 0.053 0.947 29 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -14.249 0.919 -5.185 15.191 hybrid contribution 0.188 -1.287 0.620 1.441 sum -14.061 -0.368 -4.565 14.789 Atomic orbital electron populations 1.20314 0.84288 1.04452 1.03962 1.29139 1.04056 0.92146 1.05814 1.71449 0.97301 1.26986 1.14449 1.71426 1.05730 1.17199 1.14480 1.29478 1.03089 0.91897 1.02012 1.20516 0.84919 0.99743 0.94680 1.60811 1.06452 1.55780 1.08007 1.19175 0.81339 0.92198 0.96610 0.97680 1.21738 1.02710 0.97279 0.96771 1.21210 0.97143 1.35013 1.02638 0.92110 1.24906 0.95943 0.96012 0.97016 1.69894 1.02794 1.45241 1.34745 0.86491 0.77529 0.79760 0.83607 1.20692 1.21117 1.19810 1.83678 0.98601 1.12305 1.65903 0.89468 0.89903 0.89073 0.93312 0.88127 0.85075 0.89875 0.97437 0.94710 0.92787 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.48 36.01 0.38 -0.18 15 2 C -0.03 -0.42 7.53 -13.30 -0.10 -0.52 15 3 N -0.26 -4.46 11.66 32.58 0.38 -4.08 15 4 N -0.25 -4.71 11.66 32.58 0.38 -4.33 15 5 C 0.01 0.25 7.04 -13.29 -0.09 0.16 15 6 C 0.13 2.43 6.08 -4.97 -0.03 2.40 15 7 N -0.68 -14.44 6.29 -109.22 -0.69 -15.13 15 8 C 0.21 5.30 2.60 -68.87 -0.18 5.12 15 9 H 0.01 0.15 7.80 -51.93 -0.40 -0.26 15 10 C -0.13 -3.15 9.19 37.16 0.34 -2.80 15 11 C -0.52 -14.06 8.59 -34.44 -0.30 -14.35 15 12 H 0.06 1.62 7.62 -52.49 -0.40 1.22 15 13 C 0.06 1.72 5.30 -17.82 -0.09 1.63 15 14 N -0.89 -24.93 11.32 55.43 0.63 -24.30 15 15 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 15 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 15 17 H -0.29 -6.64 7.11 56.52 0.40 -6.24 15 18 H -0.27 -6.34 7.11 56.52 0.40 -5.94 15 19 S 0.15 1.95 23.04 -107.50 -2.48 -0.53 15 20 H 0.09 0.56 8.14 -51.93 -0.42 0.13 15 21 H 0.08 0.50 8.14 -51.93 -0.42 0.08 15 22 H 0.09 0.70 8.14 -51.93 -0.42 0.28 15 23 H 0.05 0.81 8.05 -51.93 -0.42 0.39 15 24 H 0.10 1.86 7.44 -51.93 -0.39 1.48 15 25 H 0.33 6.82 8.21 -39.29 -0.32 6.50 15 26 H 0.08 2.23 6.07 -51.93 -0.32 1.91 15 27 H 0.01 0.15 7.45 -51.93 -0.39 -0.24 15 28 H 0.03 0.87 8.14 -51.93 -0.42 0.44 15 29 H 0.26 7.00 8.31 -40.82 -0.34 6.66 15 LS Contribution 265.18 15.07 4.00 4.00 Total: -1.00 -30.28 265.18 -6.34 -36.62 By element: Atomic # 1 Polarization: 3.83 SS G_CDS: -3.46 Total: 0.37 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: -0.07 Total: -8.55 kcal Atomic # 7 Polarization: -48.54 SS G_CDS: 0.70 Total: -47.84 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Atomic # 16 Polarization: 1.95 SS G_CDS: -2.48 Total: -0.53 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -30.28 -6.34 -36.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308253494.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.458 kcal (2) G-P(sol) polarization free energy of solvation -30.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.619 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds