Wall clock time and date at job start Sun Mar 29 2020 21:46:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.29415 * 125.69417 * 2 1 4 4 N 1.26404 * 116.47717 * 179.97438 * 3 2 1 5 5 C 1.29417 * 116.46934 * 0.02562 * 4 3 2 6 6 C 1.50703 * 125.68991 * 179.97438 * 5 4 3 7 7 N 1.46904 * 109.46988 * 90.02785 * 6 5 4 8 8 C 1.46895 * 111.00067 * 179.97438 * 7 6 5 9 9 H 1.09005 * 109.46970 * 325.00131 * 8 7 6 10 10 C 1.52998 * 109.47077 * 84.99898 * 8 7 6 11 11 C 1.50705 * 109.47334 * 204.99982 * 8 7 6 12 12 H 1.07997 * 119.99795 * 359.97438 * 11 8 7 13 13 C 1.37869 * 120.00051 * 179.97438 * 11 8 7 14 14 N 1.31518 * 120.00045 * 0.02562 * 13 11 8 15 15 Si 1.86796 * 119.99938 * 179.97438 * 13 11 8 16 16 H 1.48496 * 109.47307 * 90.00474 * 15 13 11 17 17 H 1.48503 * 109.47149 * 210.00309 * 15 13 11 18 18 H 1.48503 * 109.47529 * 330.00344 * 15 13 11 19 19 S 1.71218 * 125.69662 * 179.97438 * 2 1 3 20 20 H 1.09005 * 109.47034 * 90.02124 * 1 2 3 21 21 H 1.08992 * 109.46798 * 210.01843 * 1 2 3 22 22 H 1.08993 * 109.46994 * 330.02310 * 1 2 3 23 23 H 1.09001 * 109.47038 * 210.02577 * 6 5 4 24 24 H 1.08992 * 109.47386 * 330.02299 * 6 5 4 25 25 H 1.00901 * 110.99733 * 56.04193 * 7 6 5 26 26 H 1.09006 * 109.47013 * 180.02562 * 10 8 7 27 27 H 1.09003 * 109.47263 * 299.99852 * 10 8 7 28 28 H 1.08997 * 109.47207 * 59.99966 * 10 8 7 29 29 H 0.97001 * 119.99628 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5098 0.8486 0.0005 5 6 3.8936 -0.3874 0.0004 6 6 5.3233 -0.8640 0.0004 7 7 5.7876 -1.0196 1.3855 8 6 7.1804 -1.4846 1.4247 9 1 7.3597 -2.1655 0.5926 10 6 8.1223 -0.2840 1.3132 11 6 7.4339 -2.2028 2.7251 12 1 6.6398 -2.3033 3.4501 13 6 8.6795 -2.7315 2.9893 14 7 9.6467 -2.6086 2.1066 15 14 8.9938 -3.6210 4.6015 16 1 8.6897 -5.0652 4.4375 17 1 10.4180 -3.4560 4.9884 18 1 8.1237 -3.0491 5.6603 19 16 2.5061 -1.3905 0.0006 20 1 -0.3633 -0.0004 -1.0277 21 1 -0.3632 -0.8898 0.5141 22 1 -0.3633 0.8901 0.5134 23 1 5.3866 -1.8230 -0.5138 24 1 5.9495 -0.1345 -0.5129 25 1 5.1841 -1.6423 1.9013 26 1 9.1558 -0.6291 1.3418 27 1 7.9390 0.2354 0.3725 28 1 7.9430 0.3969 2.1452 29 1 10.5231 -2.9803 2.2927 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308253494.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:24 Heat of formation + Delta-G solvation = 35.827486 kcal Electronic energy + Delta-G solvation = -13168.304048 eV Core-core repulsion = 10831.667871 eV Total energy + Delta-G solvation = -2336.636177 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.30327 -38.01277 -35.10782 -33.81226 -31.60333 -29.40747 -27.46179 -26.75161 -24.88645 -21.87029 -20.90488 -20.28067 -18.60294 -17.11955 -16.83823 -16.31850 -15.76424 -15.39159 -15.07488 -14.36385 -14.28201 -13.85904 -13.61663 -13.40804 -13.10400 -12.79393 -12.73461 -12.35317 -12.21407 -12.05145 -11.44103 -11.17380 -10.97170 -10.72863 -10.59858 -10.56972 -9.21670 -8.14916 -6.29209 -0.56503 -0.07702 0.34789 1.42523 1.44698 1.50663 1.54958 2.41188 2.95956 3.14356 3.55330 3.65694 3.94809 4.22847 4.47474 4.55036 4.64946 4.76492 4.82612 5.06488 5.08965 5.15894 5.40200 5.63372 5.79817 6.17997 6.33901 6.63688 6.90641 7.41027 7.55580 8.90932 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.050078 B = 0.005698 C = 0.005368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 558.988075 B = 4912.742051 C = 5215.175894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.022 4.022 3 N -0.304 5.304 4 N -0.286 5.286 5 C -0.020 4.020 6 C 0.140 3.860 7 N -0.682 5.682 8 C 0.219 3.781 9 H -0.015 1.015 10 C -0.117 4.117 11 C -0.540 4.540 12 H 0.060 0.940 13 C 0.016 3.984 14 N -0.916 5.916 15 Si 0.963 3.037 16 H -0.272 1.272 17 H -0.284 1.284 18 H -0.270 1.270 19 S 0.224 5.776 20 H 0.111 0.889 21 H 0.110 0.890 22 H 0.097 0.903 23 H 0.064 0.936 24 H 0.088 0.912 25 H 0.336 0.664 26 H 0.061 0.939 27 H 0.023 0.977 28 H 0.024 0.976 29 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.725 -1.114 -4.892 17.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.301 4.301 3 N -0.142 5.142 4 N -0.123 5.123 5 C -0.300 4.300 6 C 0.007 3.993 7 N -0.315 5.315 8 C 0.111 3.889 9 H 0.003 0.997 10 C -0.175 4.175 11 C -0.578 4.578 12 H 0.078 0.922 13 C -0.184 4.184 14 N -0.555 5.555 15 Si 0.788 3.212 16 H -0.197 1.197 17 H -0.210 1.210 18 H -0.195 1.195 19 S 0.468 5.532 20 H 0.129 0.871 21 H 0.128 0.872 22 H 0.115 0.885 23 H 0.082 0.918 24 H 0.106 0.894 25 H 0.154 0.846 26 H 0.080 0.920 27 H 0.042 0.958 28 H 0.043 0.957 29 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.301 -0.130 -4.863 17.012 hybrid contribution 0.672 -0.977 0.462 1.273 sum -15.629 -1.107 -4.401 16.274 Atomic orbital electron populations 1.20651 0.80655 1.06084 1.05951 1.30015 1.06118 0.91630 1.02300 1.71427 0.97015 1.28635 1.17123 1.71381 1.07159 1.18690 1.15092 1.29154 1.03816 0.92877 1.04157 1.20360 0.86050 1.00168 0.92685 1.60633 1.04958 1.55478 1.10435 1.18949 0.83314 0.91461 0.95149 0.99702 1.21590 1.01563 0.97241 0.97154 1.21532 0.97413 1.35450 1.03454 0.92168 1.25699 0.95736 0.96731 1.00192 1.70012 1.03118 1.45928 1.36397 0.85479 0.77234 0.78844 0.79599 1.19740 1.20975 1.19501 1.83349 0.95499 1.10163 1.64223 0.87071 0.87167 0.88485 0.91787 0.89363 0.84644 0.91981 0.95848 0.95705 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.48 71.24 0.75 -0.16 15 2 C -0.02 -0.51 7.53 88.46 0.67 0.15 15 3 N -0.30 -10.00 11.66 -50.85 -0.59 -10.60 15 4 N -0.29 -10.67 11.66 -50.84 -0.59 -11.26 15 5 C -0.02 -0.67 7.04 88.47 0.62 -0.04 15 6 C 0.14 5.06 6.08 85.56 0.52 5.58 15 7 N -0.68 -29.18 6.29 -499.46 -3.14 -32.32 15 8 C 0.22 11.02 2.60 44.17 0.11 11.13 15 9 H -0.01 -0.78 7.80 -2.38 -0.02 -0.80 15 10 C -0.12 -5.93 9.19 71.98 0.66 -5.27 15 11 C -0.54 -29.21 8.59 25.60 0.22 -28.99 15 12 H 0.06 3.19 7.62 -2.91 -0.02 3.16 15 13 C 0.02 0.87 5.30 84.65 0.45 1.32 15 14 N -0.92 -51.83 11.32 21.44 0.24 -51.59 15 15 Si 0.96 42.75 29.54 68.60 2.03 44.77 15 16 H -0.27 -11.61 7.11 99.48 0.71 -10.91 15 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 18 H -0.27 -11.78 7.11 99.48 0.71 -11.07 15 19 S 0.22 5.20 23.04 -56.49 -1.30 3.89 15 20 H 0.11 0.94 8.14 -2.38 -0.02 0.93 15 21 H 0.11 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.10 1.17 8.14 -2.39 -0.02 1.15 15 23 H 0.06 2.09 8.05 -2.39 -0.02 2.07 15 24 H 0.09 3.34 7.44 -2.39 -0.02 3.32 15 25 H 0.34 13.70 8.21 -89.69 -0.74 12.96 15 26 H 0.06 3.40 6.07 -2.38 -0.01 3.38 15 27 H 0.02 1.05 7.45 -2.39 -0.02 1.03 15 28 H 0.02 1.24 8.14 -2.39 -0.02 1.22 15 29 H 0.26 14.17 8.31 -92.71 -0.77 13.40 15 Total: -1.00 -65.54 265.18 1.07 -64.47 By element: Atomic # 1 Polarization: 8.47 SS G_CDS: 0.43 Total: 8.89 kcal Atomic # 6 Polarization: -20.27 SS G_CDS: 4.00 Total: -16.27 kcal Atomic # 7 Polarization: -101.68 SS G_CDS: -4.08 Total: -105.76 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.77 kcal Atomic # 16 Polarization: 5.20 SS G_CDS: -1.30 Total: 3.89 kcal Total: -65.54 1.07 -64.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308253494.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.302 kcal (2) G-P(sol) polarization free energy of solvation -65.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.760 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.474 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds