Wall clock time and date at job start Sun Mar 29 2020 21:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86800 * 120.00045 * 2 1 4 4 H 1.48497 * 109.46847 * 269.99662 * 3 2 1 5 5 H 1.48493 * 109.47164 * 30.00093 * 3 2 1 6 6 H 1.48502 * 109.46888 * 149.99977 * 3 2 1 7 7 C 1.38950 * 119.99401 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99459 * 179.97438 * 7 2 1 9 9 N 1.37095 * 120.00380 * 359.97438 * 7 2 1 10 10 C 1.34773 * 119.99878 * 179.97438 * 9 7 2 11 11 O 1.21297 * 120.00195 * 359.72970 * 10 9 7 12 12 C 1.50706 * 120.00081 * 180.02562 * 10 9 7 13 13 S 1.80996 * 109.47276 * 179.72626 * 12 10 9 14 14 C 1.76195 * 99.99998 * 179.97438 * 13 12 10 15 15 N 1.31279 * 125.80400 * 0.02562 * 14 13 12 16 16 C 1.34357 * 109.30774 * 179.97438 * 15 14 13 17 17 C 1.34394 * 108.34439 * 359.97438 * 16 15 14 18 18 N 1.36109 * 125.80615 * 179.71958 * 14 13 12 19 19 H 0.97003 * 126.50158 * 0.02562 * 18 14 13 20 20 H 0.97004 * 120.00112 * 0.02562 * 1 2 3 21 21 H 0.96998 * 119.99597 * 0.02562 * 9 7 2 22 22 H 1.09001 * 109.46564 * 299.73030 * 12 10 9 23 23 H 1.08998 * 109.47012 * 59.72084 * 12 10 9 24 24 H 1.07992 * 125.82936 * 180.02562 * 16 15 14 25 25 H 1.07994 * 126.51806 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4957 2.0463 -1.4001 5 1 1.4456 2.6526 0.7000 6 1 3.5457 1.4401 0.7001 7 6 2.0087 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0001 9 7 1.3232 -2.3907 0.0016 10 6 1.9971 -3.5578 0.0016 11 8 3.2100 -3.5579 -0.0043 12 6 1.2435 -4.8630 0.0022 13 16 2.4196 -6.2387 -0.0061 14 6 1.2995 -7.5988 -0.0032 15 7 -0.0105 -7.5148 0.0028 16 6 -0.5350 -8.7518 0.0027 17 6 0.4743 -9.6392 -0.0042 18 7 1.6454 -8.9152 -0.0128 19 1 2.5461 -9.2751 -0.0220 20 1 -0.4850 0.8401 -0.0004 21 1 0.3532 -2.3906 0.0016 22 1 0.6209 -4.9225 0.8949 23 1 0.6128 -4.9187 -0.8850 24 1 -1.5879 -8.9920 0.0065 25 1 0.3839 -10.7153 -0.0058 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308424870.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:28:21 Heat of formation + Delta-G solvation = -4.845793 kcal Electronic energy + Delta-G solvation = -12663.498029 eV Core-core repulsion = 10189.265032 eV Total energy + Delta-G solvation = -2474.232998 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.047 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.64428 -40.14877 -36.09459 -33.54184 -33.38211 -31.09824 -30.25446 -26.68647 -23.28830 -22.18280 -21.49263 -20.24821 -19.77871 -17.81196 -17.00331 -16.48516 -16.44275 -15.86792 -15.84252 -15.08932 -14.76077 -14.44207 -14.11851 -13.78191 -13.46524 -12.90916 -12.46239 -12.11470 -11.67129 -11.57828 -11.17303 -11.12599 -10.61109 -10.37948 -10.10548 -8.51599 -8.40649 -6.02085 0.16106 0.95655 1.09296 1.36256 1.42911 1.56232 1.88259 2.06591 2.28233 2.44680 3.04835 3.14483 4.05176 4.13927 4.19063 4.42626 4.43269 4.61343 5.02831 5.37504 5.71260 5.89105 6.29792 6.46061 6.92026 7.02099 7.40739 7.92930 8.65522 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.073653 B = 0.005276 C = 0.004936 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 380.068354 B = 5306.140780 C = 5671.058701 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.086 0.914 9 N -0.556 5.556 10 C 0.450 3.550 11 O -0.618 6.618 12 C -0.104 4.104 13 S 0.037 5.963 14 C 0.155 3.845 15 N -0.524 5.524 16 C -0.053 4.053 17 C -0.021 4.021 18 N -0.546 5.546 19 H 0.436 0.564 20 H 0.281 0.719 21 H 0.399 0.601 22 H 0.117 0.883 23 H 0.117 0.883 24 H 0.192 0.808 25 H 0.227 0.773 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.944 -16.540 -0.019 16.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.195 1.195 5 H -0.194 1.194 6 H -0.195 1.195 7 C -0.467 4.467 8 H 0.104 0.896 9 N -0.191 5.191 10 C 0.236 3.764 11 O -0.507 6.507 12 C -0.256 4.256 13 S 0.266 5.734 14 C -0.217 4.217 15 N -0.249 5.249 16 C -0.202 4.202 17 C -0.158 4.158 18 N -0.154 5.154 19 H 0.277 0.723 20 H 0.090 0.910 21 H 0.233 0.767 22 H 0.135 0.865 23 H 0.135 0.865 24 H 0.209 0.791 25 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges 0.397 -15.599 -0.021 15.604 hybrid contribution -0.918 -0.053 -0.007 0.920 sum -0.522 -15.652 -0.028 15.660 Atomic orbital electron populations 1.69685 1.07022 1.29699 1.49177 1.26152 0.96569 1.02678 0.95665 0.84851 0.77905 0.76336 0.78790 1.19450 1.19445 1.19471 1.19761 0.92978 0.83468 1.50541 0.89621 1.41800 1.09549 1.04365 1.63431 1.19707 0.87702 0.85072 0.83905 1.90523 1.14983 1.87419 1.57731 1.23264 1.00860 0.92889 1.08545 1.85924 1.03342 0.90608 1.93564 1.25463 0.95472 0.89896 1.10836 1.70754 1.05003 1.27535 1.21579 1.22912 1.01388 0.87622 1.08317 1.23616 0.83545 1.00322 1.08304 1.43421 1.10884 1.04494 1.56618 0.72262 0.90993 0.76660 0.86453 0.86463 0.79129 0.75610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.49 13.05 21.66 0.28 -49.21 15 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 15 3 Si 1.00 42.52 29.55 68.60 2.03 44.54 15 4 H -0.27 -11.10 7.11 99.48 0.71 -10.40 15 5 H -0.27 -10.87 7.11 99.48 0.71 -10.16 15 6 H -0.27 -11.50 7.11 99.48 0.71 -10.79 15 7 C -0.34 -19.19 9.68 84.04 0.81 -18.38 15 8 H 0.09 5.12 7.16 -2.91 -0.02 5.10 15 9 N -0.56 -29.11 5.29 -306.98 -1.62 -30.73 15 10 C 0.45 22.12 7.80 87.66 0.68 22.80 15 11 O -0.62 -34.37 15.44 -3.08 -0.05 -34.41 15 12 C -0.10 -4.00 5.68 71.24 0.40 -3.59 15 13 S 0.04 1.27 21.45 -56.49 -1.21 0.06 15 14 C 0.16 4.62 8.26 179.69 1.48 6.10 15 15 N -0.52 -16.59 10.60 -196.47 -2.08 -18.67 15 16 C -0.05 -1.24 11.84 83.43 0.99 -0.25 15 17 C -0.02 -0.36 12.04 82.90 1.00 0.64 15 18 N -0.55 -11.24 6.24 -194.04 -1.21 -12.45 15 19 H 0.44 6.16 8.96 -92.71 -0.83 5.33 15 20 H 0.28 14.12 8.31 -92.71 -0.77 13.35 15 21 H 0.40 20.01 7.90 -92.71 -0.73 19.28 15 22 H 0.12 4.29 8.14 -2.39 -0.02 4.27 15 23 H 0.12 4.29 8.14 -2.40 -0.02 4.27 15 24 H 0.19 3.32 8.06 -2.91 -0.02 3.29 15 25 H 0.23 1.43 8.06 -2.91 -0.02 1.40 15 Total: -1.00 -70.32 248.46 1.65 -68.66 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: -0.32 Total: 24.94 kcal Atomic # 6 Polarization: 1.42 SS G_CDS: 5.84 Total: 7.26 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -4.63 Total: -111.06 kcal Atomic # 8 Polarization: -34.37 SS G_CDS: -0.05 Total: -34.41 kcal Atomic # 14 Polarization: 42.52 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 16 Polarization: 1.27 SS G_CDS: -1.21 Total: 0.06 kcal Total: -70.32 1.65 -68.66 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308424870.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.819 kcal (2) G-P(sol) polarization free energy of solvation -70.319 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.665 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds