Wall clock time and date at job start Sun Mar 29 2020 22:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47032 * 300.00298 * 3 2 1 6 6 H 1.48504 * 109.46965 * 59.99982 * 3 2 1 7 7 C 1.38820 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99872 * 160.19021 * 7 2 1 9 9 N 1.36932 * 119.99829 * 340.18995 * 7 2 1 10 10 C 1.46496 * 120.00175 * 320.55671 * 9 7 2 11 11 C 1.52996 * 109.47380 * 270.00106 * 10 9 7 12 12 H 1.08998 * 109.60491 * 54.29482 * 11 10 9 13 13 C 1.53855 * 109.60931 * 174.63823 * 11 10 9 14 14 C 1.55044 * 106.94467 * 167.33196 * 13 11 10 15 15 S 1.83457 * 102.08994 * 317.64172 * 14 13 11 16 16 C 1.54276 * 109.60786 * 293.96270 * 11 10 9 17 17 C 1.46502 * 119.99620 * 140.56018 * 9 7 2 18 18 C 1.53002 * 117.49590 * 294.66890 * 17 9 7 19 19 C 1.53001 * 60.03264 * 107.48250 * 18 17 9 20 20 H 0.96999 * 119.99904 * 355.01915 * 1 2 3 21 21 H 1.08999 * 109.47115 * 30.00648 * 10 9 7 22 22 H 1.08997 * 109.46935 * 150.00011 * 10 9 7 23 23 H 1.08998 * 109.97546 * 286.53197 * 13 11 10 24 24 H 1.09002 * 109.97622 * 47.81330 * 13 11 10 25 25 H 1.09004 * 110.81196 * 199.54059 * 14 13 11 26 26 H 1.09000 * 111.18412 * 75.90663 * 14 13 11 27 27 H 1.09003 * 110.40164 * 330.91473 * 16 11 10 28 28 H 1.09000 * 110.40415 * 93.33522 * 16 11 10 29 29 H 1.08999 * 115.55024 * 149.00706 * 17 9 7 30 30 H 1.09003 * 117.50021 * 214.98230 * 18 17 9 31 31 H 1.08998 * 117.50223 * 359.97438 * 18 17 9 32 32 H 1.09001 * 117.50242 * 107.49676 * 19 18 17 33 33 H 1.08997 * 117.50010 * 252.52927 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0423 -1.2300 -0.3164 9 7 1.3862 -2.3528 0.4030 10 6 0.4657 -2.3269 1.5423 11 6 1.2422 -2.6005 2.8318 12 1 2.0710 -1.8975 2.9158 13 6 0.3057 -2.4418 4.0421 14 6 1.0455 -3.0380 5.2672 15 16 1.7799 -4.5662 4.5663 16 6 1.7875 -4.0436 2.8115 17 6 1.6394 -3.6097 -0.3059 18 6 1.1780 -3.7050 -1.7616 19 6 2.6689 -3.5873 -1.4385 20 1 -0.4850 0.8369 0.0729 21 1 -0.0081 -1.3473 1.6043 22 1 -0.2988 -3.0924 1.4091 23 1 0.0961 -1.3862 4.2148 24 1 -0.6243 -2.9826 3.8667 25 1 0.3429 -3.2760 6.0658 26 1 1.8227 -2.3627 5.6250 27 1 1.1362 -4.6876 2.2205 28 1 2.8024 -4.0608 2.4144 29 1 1.5782 -4.5126 0.3016 30 1 0.8137 -4.6708 -2.1118 31 1 0.6858 -2.8329 -2.1917 32 1 3.2854 -4.4757 -1.5761 33 1 3.1575 -2.6375 -1.6557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308427727.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:32 Heat of formation + Delta-G solvation = 34.302246 kcal Electronic energy + Delta-G solvation = -14341.342561 eV Core-core repulsion = 12108.180587 eV Total energy + Delta-G solvation = -2233.161973 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -37.56143 -35.72459 -33.17005 -30.80358 -28.86872 -26.02678 -24.46117 -22.40739 -21.36040 -19.83126 -19.56599 -16.35985 -16.24259 -15.60502 -14.89624 -14.56011 -13.91618 -13.62911 -13.35040 -12.58749 -12.34287 -11.94999 -11.70355 -11.47244 -11.35472 -10.95921 -10.75981 -10.63042 -10.36213 -10.31730 -10.03436 -9.94476 -9.60481 -9.36033 -9.23948 -8.52976 -7.40810 -6.57852 -5.83827 -3.50884 2.21878 2.76060 3.28500 3.38623 3.41035 4.38448 4.91172 4.97799 5.08085 5.24044 5.32636 5.41841 5.58874 5.67028 5.80940 5.93877 6.07095 6.10119 6.13338 6.24534 6.38138 6.48496 6.49863 6.59418 6.68427 7.01414 7.05350 7.22694 7.50675 7.74945 8.44239 9.09740 9.70514 10.29340 11.10493 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.010298 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.964383 B = 2718.362423 C = 3486.590022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.015 3.985 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.289 1.289 6 H -0.287 1.287 7 C -0.258 4.258 8 H 0.064 0.936 9 N -0.551 5.551 10 C 0.163 3.837 11 C -0.115 4.115 12 H 0.081 0.919 13 C -0.120 4.120 14 C -0.063 4.063 15 S -0.342 6.342 16 C -0.040 4.040 17 C 0.118 3.882 18 C -0.221 4.221 19 C -0.196 4.196 20 H 0.254 0.746 21 H 0.098 0.902 22 H 0.030 0.970 23 H 0.080 0.920 24 H 0.074 0.926 25 H 0.093 0.907 26 H 0.085 0.915 27 H 0.085 0.915 28 H 0.090 0.910 29 H 0.087 0.913 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.073 0.927 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.869 -4.974 5.842 7.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.186 4.186 3 Si 0.723 3.277 4 H -0.200 1.200 5 H -0.216 1.216 6 H -0.214 1.214 7 C -0.388 4.388 8 H 0.082 0.918 9 N -0.267 5.267 10 C 0.036 3.964 11 C -0.137 4.137 12 H 0.099 0.901 13 C -0.160 4.160 14 C -0.211 4.211 15 S -0.116 6.116 16 C -0.187 4.187 17 C 0.009 3.991 18 C -0.262 4.262 19 C -0.234 4.234 20 H 0.064 0.936 21 H 0.116 0.884 22 H 0.048 0.952 23 H 0.099 0.901 24 H 0.092 0.908 25 H 0.112 0.888 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.108 0.892 29 H 0.105 0.895 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.092 0.908 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 1.112 -5.836 6.321 8.675 hybrid contribution 0.098 1.899 -0.625 2.002 sum 1.210 -3.937 5.696 7.029 Atomic orbital electron populations 1.70063 1.05503 1.26091 1.50814 1.25240 0.95000 0.98801 0.99563 0.86381 0.79901 0.84049 0.77395 1.19971 1.21571 1.21371 1.19069 0.93348 0.85040 1.41339 0.91837 1.43359 1.50887 1.03064 1.29392 1.20882 0.90143 1.02679 0.82718 1.22703 0.99495 0.93936 0.97593 0.90057 1.22557 0.99286 1.01866 0.92257 1.24166 1.01405 0.95285 1.00261 1.87272 1.84811 1.28343 1.11188 1.24149 1.04644 0.99360 0.90592 1.21341 1.00689 0.90665 0.86414 1.23349 0.96809 1.00932 1.05144 1.23027 0.92196 1.01798 1.06381 0.93581 0.88435 0.95168 0.90101 0.90771 0.88841 0.89666 0.89652 0.89159 0.89525 0.91320 0.89001 0.90844 0.88493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.18 11.50 55.49 0.64 -23.54 16 2 C 0.01 0.39 4.98 -17.43 -0.09 0.30 16 3 Si 0.89 20.75 29.60 -169.99 -5.03 15.72 16 4 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 6 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.26 -6.64 8.47 -15.06 -0.13 -6.76 16 8 H 0.06 1.66 6.75 -52.48 -0.35 1.31 16 9 N -0.55 -12.80 2.65 -165.62 -0.44 -13.23 16 10 C 0.16 3.51 4.70 -4.05 -0.02 3.49 16 11 C -0.12 -2.08 2.81 -89.51 -0.25 -2.33 16 12 H 0.08 1.63 8.14 -51.93 -0.42 1.21 16 13 C -0.12 -1.83 5.76 -25.21 -0.15 -1.98 16 14 C -0.06 -0.87 7.38 38.24 0.28 -0.59 16 15 S -0.34 -5.49 23.26 -107.50 -2.50 -7.99 16 16 C -0.04 -0.67 5.52 37.83 0.21 -0.47 16 17 C 0.12 2.44 6.05 -67.89 -0.41 2.02 16 18 C -0.22 -4.49 10.35 -26.73 -0.28 -4.77 16 19 C -0.20 -3.82 9.80 -26.69 -0.26 -4.09 16 20 H 0.25 6.73 8.32 -40.82 -0.34 6.39 16 21 H 0.10 2.38 5.59 -51.93 -0.29 2.09 16 22 H 0.03 0.63 7.95 -51.93 -0.41 0.22 16 23 H 0.08 1.20 8.14 -51.93 -0.42 0.77 16 24 H 0.07 1.10 8.11 -51.93 -0.42 0.68 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 27 H 0.09 1.44 6.62 -51.93 -0.34 1.09 16 28 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 29 H 0.09 1.62 6.23 -51.93 -0.32 1.30 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.09 2.14 8.14 -51.93 -0.42 1.72 16 32 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 33 H 0.10 2.07 6.46 -51.93 -0.34 1.73 16 LS Contribution 275.33 15.07 4.15 4.15 Total: -1.00 -26.72 275.33 -9.27 -35.99 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.00 Total: 4.07 kcal Atomic # 6 Polarization: -14.08 SS G_CDS: -1.09 Total: -15.17 kcal Atomic # 7 Polarization: -36.97 SS G_CDS: 0.20 Total: -36.77 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -2.50 Total: -7.99 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -26.72 -9.27 -35.99 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308427727.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.297 kcal (2) G-P(sol) polarization free energy of solvation -26.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.572 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.270 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.302 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds