Wall clock time and date at job start Sun Mar 29 2020 22:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31610 * 1 3 3 Si 1.86803 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47275 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47032 * 300.00298 * 3 2 1 6 6 H 1.48504 * 109.46965 * 59.99982 * 3 2 1 7 7 C 1.38820 * 119.99915 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99872 * 160.19021 * 7 2 1 9 9 N 1.36932 * 119.99829 * 340.18995 * 7 2 1 10 10 C 1.46496 * 120.00175 * 320.55671 * 9 7 2 11 11 C 1.52996 * 109.47380 * 270.00106 * 10 9 7 12 12 H 1.08998 * 109.60491 * 54.29482 * 11 10 9 13 13 C 1.53855 * 109.60931 * 174.63823 * 11 10 9 14 14 C 1.55044 * 106.94467 * 167.33196 * 13 11 10 15 15 S 1.83457 * 102.08994 * 317.64172 * 14 13 11 16 16 C 1.54276 * 109.60786 * 293.96270 * 11 10 9 17 17 C 1.46502 * 119.99620 * 140.56018 * 9 7 2 18 18 C 1.53002 * 117.49590 * 294.66890 * 17 9 7 19 19 C 1.53001 * 60.03264 * 107.48250 * 18 17 9 20 20 H 0.96999 * 119.99904 * 355.01915 * 1 2 3 21 21 H 1.08999 * 109.47115 * 30.00648 * 10 9 7 22 22 H 1.08997 * 109.46935 * 150.00011 * 10 9 7 23 23 H 1.08998 * 109.97546 * 286.53197 * 13 11 10 24 24 H 1.09002 * 109.97622 * 47.81330 * 13 11 10 25 25 H 1.09004 * 110.81196 * 199.54059 * 14 13 11 26 26 H 1.09000 * 111.18412 * 75.90663 * 14 13 11 27 27 H 1.09003 * 110.40164 * 330.91473 * 16 11 10 28 28 H 1.09000 * 110.40415 * 93.33522 * 16 11 10 29 29 H 1.08999 * 115.55024 * 149.00706 * 17 9 7 30 30 H 1.09003 * 117.50021 * 214.98230 * 18 17 9 31 31 H 1.08998 * 117.50223 * 359.97438 * 18 17 9 32 32 H 1.09001 * 117.50242 * 107.49676 * 19 18 17 33 33 H 1.08997 * 117.50010 * 252.52927 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.7102 1.3463 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0423 -1.2300 -0.3164 9 7 1.3862 -2.3528 0.4030 10 6 0.4657 -2.3269 1.5423 11 6 1.2422 -2.6005 2.8318 12 1 2.0710 -1.8975 2.9158 13 6 0.3057 -2.4418 4.0421 14 6 1.0455 -3.0380 5.2672 15 16 1.7799 -4.5662 4.5663 16 6 1.7875 -4.0436 2.8115 17 6 1.6394 -3.6097 -0.3059 18 6 1.1780 -3.7050 -1.7616 19 6 2.6689 -3.5873 -1.4385 20 1 -0.4850 0.8369 0.0729 21 1 -0.0081 -1.3473 1.6043 22 1 -0.2988 -3.0924 1.4091 23 1 0.0961 -1.3862 4.2148 24 1 -0.6243 -2.9826 3.8667 25 1 0.3429 -3.2760 6.0658 26 1 1.8227 -2.3627 5.6250 27 1 1.1362 -4.6876 2.2205 28 1 2.8024 -4.0608 2.4144 29 1 1.5782 -4.5126 0.3016 30 1 0.8137 -4.6708 -2.1118 31 1 0.6858 -2.8329 -2.1917 32 1 3.2854 -4.4757 -1.5761 33 1 3.1575 -2.6375 -1.6557 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308427727.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:32 Heat of formation + Delta-G solvation = 21.537743 kcal Electronic energy + Delta-G solvation = -14341.896071 eV Core-core repulsion = 12108.180587 eV Total energy + Delta-G solvation = -2233.715484 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.20555 -37.20123 -34.97383 -32.52507 -30.33905 -27.66839 -26.18621 -23.84528 -22.97100 -21.59942 -21.01304 -18.24253 -17.56539 -17.28269 -16.39138 -16.29441 -15.57300 -15.05620 -14.85110 -14.18073 -13.81707 -13.39807 -13.36528 -13.17069 -12.77062 -12.64219 -12.49573 -12.25285 -11.99276 -11.82033 -11.74248 -11.56538 -11.28598 -10.87265 -10.77155 -10.47689 -8.66902 -8.48729 -7.78185 -5.50262 0.98161 1.41735 1.46995 1.49241 1.55475 2.48037 3.14894 3.41068 3.44988 3.79411 3.94370 4.10280 4.20322 4.33932 4.39565 4.49589 4.57352 4.65296 4.74656 4.82136 4.87483 4.94393 5.02867 5.10207 5.18994 5.37143 5.46426 5.55436 5.66700 5.76253 6.47507 7.16632 7.84209 8.36806 9.10501 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.023290 B = 0.010298 C = 0.008029 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.964383 B = 2718.362423 C = 3486.590022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C -0.030 4.030 3 Si 0.948 3.052 4 H -0.270 1.270 5 H -0.295 1.295 6 H -0.285 1.285 7 C -0.258 4.258 8 H 0.055 0.945 9 N -0.566 5.566 10 C 0.168 3.832 11 C -0.104 4.104 12 H 0.058 0.942 13 C -0.116 4.116 14 C -0.052 4.052 15 S -0.351 6.351 16 C -0.033 4.033 17 C 0.103 3.897 18 C -0.220 4.220 19 C -0.184 4.184 20 H 0.251 0.749 21 H 0.067 0.933 22 H 0.031 0.969 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.120 0.880 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.082 0.918 29 H 0.112 0.888 30 H 0.099 0.901 31 H 0.053 0.947 32 H 0.109 0.891 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.351 -6.010 6.877 9.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.228 4.228 3 Si 0.777 3.223 4 H -0.195 1.195 5 H -0.222 1.222 6 H -0.212 1.212 7 C -0.388 4.388 8 H 0.073 0.927 9 N -0.283 5.283 10 C 0.041 3.959 11 C -0.127 4.127 12 H 0.077 0.923 13 C -0.155 4.155 14 C -0.200 4.200 15 S -0.125 6.125 16 C -0.180 4.180 17 C -0.005 4.005 18 C -0.261 4.261 19 C -0.222 4.222 20 H 0.060 0.940 21 H 0.085 0.915 22 H 0.050 0.950 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.138 0.862 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.100 0.900 29 H 0.129 0.871 30 H 0.118 0.882 31 H 0.072 0.928 32 H 0.127 0.873 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 1.607 -6.886 7.362 10.208 hybrid contribution -0.053 2.170 -0.959 2.373 sum 1.554 -4.716 6.403 8.103 Atomic orbital electron populations 1.70170 1.06568 1.26348 1.52481 1.25813 0.95588 1.01221 1.00161 0.85526 0.79023 0.80896 0.76894 1.19468 1.22220 1.21180 1.19172 0.93091 0.86225 1.40322 0.92720 1.43536 1.50950 1.03349 1.30432 1.20754 0.90293 1.00981 0.83892 1.22464 0.98779 0.94312 0.97108 0.92347 1.22492 0.98931 1.02449 0.91665 1.24242 1.01841 0.93895 0.99974 1.87325 1.85253 1.29702 1.10218 1.23940 1.04043 0.98384 0.91677 1.21612 1.01611 0.90434 0.86813 1.23265 0.97349 1.00878 1.04637 1.23029 0.91961 1.02196 1.04977 0.93956 0.91495 0.95047 0.89744 0.90167 0.86154 0.88773 0.89435 0.89968 0.87073 0.88232 0.92783 0.87305 0.90789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.11 11.50 21.65 0.25 -50.86 16 2 C -0.03 -1.59 4.98 84.87 0.42 -1.17 16 3 Si 0.95 43.28 29.60 68.60 2.03 45.31 16 4 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 5 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 6 H -0.29 -12.84 7.11 99.48 0.71 -12.13 16 7 C -0.26 -13.42 8.47 84.04 0.71 -12.71 16 8 H 0.06 2.91 6.75 -2.91 -0.02 2.89 16 9 N -0.57 -26.40 2.65 -677.90 -1.80 -28.20 16 10 C 0.17 7.24 4.70 86.38 0.41 7.65 16 11 C -0.10 -3.71 2.81 -10.07 -0.03 -3.74 16 12 H 0.06 2.34 8.14 -2.39 -0.02 2.32 16 13 C -0.12 -3.34 5.76 31.58 0.18 -3.15 16 14 C -0.05 -1.28 7.38 72.68 0.54 -0.75 16 15 S -0.35 -10.45 23.26 -56.49 -1.31 -11.76 16 16 C -0.03 -1.06 5.52 72.41 0.40 -0.66 16 17 C 0.10 4.16 6.05 45.02 0.27 4.44 16 18 C -0.22 -8.73 10.35 30.60 0.32 -8.41 16 19 C -0.18 -6.90 9.80 30.62 0.30 -6.60 16 20 H 0.25 13.62 8.32 -92.71 -0.77 12.85 16 21 H 0.07 3.35 5.59 -2.39 -0.01 3.33 16 22 H 0.03 1.31 7.95 -2.39 -0.02 1.29 16 23 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 24 H 0.08 2.23 8.11 -2.39 -0.02 2.21 16 25 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.09 2.20 8.14 -2.39 -0.02 2.19 16 27 H 0.09 2.79 6.62 -2.39 -0.02 2.77 16 28 H 0.08 2.79 8.14 -2.39 -0.02 2.77 16 29 H 0.11 3.91 6.23 -2.39 -0.01 3.89 16 30 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 31 H 0.05 2.55 8.14 -2.39 -0.02 2.53 16 32 H 0.11 3.32 8.14 -2.39 -0.02 3.30 16 33 H 0.07 3.14 6.46 -2.39 -0.02 3.12 16 Total: -1.00 -57.26 275.33 3.77 -53.49 By element: Atomic # 1 Polarization: 16.04 SS G_CDS: 1.08 Total: 17.12 kcal Atomic # 6 Polarization: -28.62 SS G_CDS: 3.52 Total: -25.10 kcal Atomic # 7 Polarization: -77.51 SS G_CDS: -1.55 Total: -79.06 kcal Atomic # 14 Polarization: 43.28 SS G_CDS: 2.03 Total: 45.31 kcal Atomic # 16 Polarization: -10.45 SS G_CDS: -1.31 Total: -11.76 kcal Total: -57.26 3.77 -53.49 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308427727.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.031 kcal (2) G-P(sol) polarization free energy of solvation -57.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds