Wall clock time and date at job start Sun Mar 29 2020 21:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 119.99723 * 2 1 4 4 H 1.48498 * 109.47564 * 269.99936 * 3 2 1 5 5 H 1.48501 * 109.46832 * 30.00172 * 3 2 1 6 6 H 1.48502 * 109.47046 * 149.99696 * 3 2 1 7 7 C 1.37875 * 120.00428 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99816 * 179.97438 * 7 2 1 9 9 C 1.50697 * 120.00175 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47549 * 179.97438 * 9 7 2 11 11 C 1.46491 * 119.99826 * 96.44301 * 10 9 7 12 12 C 1.52997 * 109.47746 * 264.98248 * 11 10 9 13 13 C 1.52998 * 117.50211 * 243.62541 * 12 11 10 14 14 C 1.52995 * 60.00087 * 252.50476 * 13 12 11 15 15 C 1.34779 * 120.00153 * 276.45260 * 10 9 7 16 16 O 1.21349 * 119.99973 * 185.67936 * 15 10 9 17 17 C 1.49435 * 120.00051 * 5.66913 * 15 10 9 18 18 O 1.21258 * 119.99799 * 355.54880 * 17 15 10 19 19 O 1.34542 * 120.00074 * 175.54636 * 17 15 10 20 20 H 0.96998 * 120.00436 * 0.02562 * 1 2 3 21 21 H 1.09009 * 109.46767 * 60.00031 * 9 7 2 22 22 H 1.08998 * 109.47099 * 300.00615 * 9 7 2 23 23 H 1.09003 * 109.47387 * 24.98380 * 11 10 9 24 24 H 1.09006 * 109.47491 * 144.98240 * 11 10 9 25 25 H 1.09003 * 115.54830 * 29.32841 * 12 11 10 26 26 H 1.09000 * 117.49708 * 359.97438 * 13 12 11 27 27 H 1.09005 * 117.50214 * 145.01448 * 13 12 11 28 28 H 1.09001 * 117.50123 * 252.50679 * 14 13 12 29 29 H 1.09001 * 117.49853 * 107.48749 * 14 13 12 30 30 H 0.96696 * 116.99717 * 180.02562 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4464 2.6527 0.7001 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0017 10 7 2.2033 -3.6126 0.0015 11 6 2.5720 -4.2612 1.2621 12 6 3.8621 -3.6377 1.7984 13 6 5.0915 -4.5418 1.9079 14 6 4.3522 -4.0995 3.1722 15 6 2.7400 -4.0401 -1.1586 16 8 3.4474 -5.0260 -1.1729 17 6 2.4639 -3.3001 -2.4271 18 8 1.6933 -2.3639 -2.4275 19 8 3.0704 -3.6727 -3.5689 20 1 -0.4851 0.8400 -0.0004 21 1 0.6242 -2.5575 -0.8881 22 1 0.6249 -2.5563 0.8919 23 1 1.7720 -4.1231 1.9895 24 1 2.7273 -5.3265 1.0909 25 1 4.0267 -2.5941 1.5301 26 1 4.9811 -5.5810 1.5982 27 1 6.0653 -4.0932 1.7113 28 1 4.8396 -3.3600 3.8076 29 1 3.7555 -4.8477 3.6940 30 1 2.8605 -3.1636 -4.3637 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308527941.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:44 Heat of formation + Delta-G solvation = -84.085395 kcal Electronic energy + Delta-G solvation = -16181.398252 eV Core-core repulsion = 13364.516640 eV Total energy + Delta-G solvation = -2816.881612 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.18556 -38.43472 -36.84666 -35.94906 -34.43270 -32.44426 -28.07078 -26.95061 -24.37910 -22.80734 -22.02038 -20.58961 -19.28786 -17.50717 -16.79426 -16.49021 -16.04237 -15.34627 -14.87420 -14.48934 -14.13760 -13.78473 -13.20112 -12.93163 -12.34641 -12.11313 -11.74491 -11.35239 -11.22718 -11.06072 -11.00598 -10.83866 -10.48595 -10.19483 -9.89792 -9.68777 -9.56070 -9.01894 -8.39467 -7.93332 -6.08150 -4.10937 1.93425 2.78512 3.27695 3.34066 3.36321 3.76524 4.10314 4.35343 4.52114 5.10221 5.24101 5.29067 5.36181 5.50342 5.78621 5.88272 5.97767 6.06014 6.17897 6.39683 6.52697 6.77995 6.78505 7.33650 7.38776 7.80305 7.97897 8.12847 8.25015 8.64390 8.89472 9.52216 11.00776 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.019292 B = 0.012062 C = 0.008672 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1451.054483 B = 2320.759756 C = 3227.869273 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.069 3.931 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.224 3.776 10 N -0.559 5.559 11 C 0.152 3.848 12 C -0.160 4.160 13 C -0.177 4.177 14 C -0.179 4.179 15 C 0.533 3.467 16 O -0.532 6.532 17 C 0.451 3.549 18 O -0.429 6.429 19 O -0.505 6.505 20 H 0.263 0.737 21 H 0.067 0.933 22 H 0.037 0.963 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.116 0.884 26 H 0.094 0.906 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.710 -6.319 0.747 7.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.133 4.133 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.211 1.211 6 H -0.200 1.200 7 C -0.556 4.556 8 H 0.073 0.927 9 C 0.105 3.895 10 N -0.291 5.291 11 C 0.030 3.970 12 C -0.179 4.179 13 C -0.214 4.214 14 C -0.217 4.217 15 C 0.315 3.685 16 O -0.411 6.411 17 C 0.285 3.715 18 O -0.311 6.311 19 O -0.316 6.316 20 H 0.072 0.928 21 H 0.084 0.916 22 H 0.055 0.945 23 H 0.105 0.895 24 H 0.094 0.906 25 H 0.134 0.866 26 H 0.112 0.888 27 H 0.106 0.894 28 H 0.109 0.891 29 H 0.110 0.890 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 4.738 -6.635 1.106 8.228 hybrid contribution 0.311 1.610 -0.556 1.731 sum 5.049 -5.026 0.550 7.145 Atomic orbital electron populations 1.69906 1.05919 1.26920 1.50073 1.24816 0.94766 0.98889 0.94867 0.86584 0.79761 0.83420 0.78143 1.20667 1.21137 1.19993 1.21215 0.92842 0.90298 1.51294 0.92700 1.20056 0.87471 0.82113 0.99857 1.48160 1.42552 1.34465 1.03958 1.21029 0.95347 0.96142 0.84495 1.22819 0.95133 1.00693 0.99280 1.22974 0.96514 1.00258 1.01635 1.22892 1.04332 1.03629 0.90824 1.18665 0.81838 0.84392 0.83564 1.90688 1.38294 1.25937 1.86131 1.23257 0.79551 0.83329 0.85317 1.91062 1.30385 1.24555 1.85069 1.84603 1.67339 1.60723 1.18984 0.92766 0.91586 0.94540 0.89524 0.90594 0.86551 0.88799 0.89440 0.89080 0.89033 0.73565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.32 13.29 55.43 0.74 -24.59 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 4 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.73 7.89 -34.44 -0.27 -14.00 16 8 H 0.05 1.47 7.35 -52.48 -0.39 1.09 16 9 C 0.22 5.43 4.81 -5.20 -0.02 5.40 16 10 N -0.56 -11.76 2.48 -175.58 -0.44 -12.20 16 11 C 0.15 2.69 5.73 -4.05 -0.02 2.67 16 12 C -0.16 -2.72 5.98 -90.62 -0.54 -3.26 16 13 C -0.18 -2.62 10.18 -26.73 -0.27 -2.89 16 14 C -0.18 -2.44 10.25 -26.73 -0.27 -2.71 16 15 C 0.53 11.40 7.64 -11.59 -0.09 11.31 16 16 O -0.53 -11.76 16.60 -7.64 -0.13 -11.88 16 17 C 0.45 9.24 8.23 35.40 0.29 9.54 16 18 O -0.43 -9.99 12.97 -19.08 -0.25 -10.24 16 19 O -0.51 -8.40 13.29 -45.08 -0.60 -8.99 16 20 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 21 H 0.07 1.74 5.75 -51.92 -0.30 1.44 16 22 H 0.04 0.91 7.78 -51.93 -0.40 0.50 16 23 H 0.09 1.41 7.78 -51.93 -0.40 1.00 16 24 H 0.08 1.27 7.24 -51.93 -0.38 0.89 16 25 H 0.12 2.28 7.67 -51.93 -0.40 1.89 16 26 H 0.09 1.37 8.03 -51.93 -0.42 0.95 16 27 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 28 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 29 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 30 H 0.41 4.49 9.11 45.56 0.41 4.91 16 LS Contribution 269.10 15.07 4.06 4.06 Total: -1.00 -31.13 269.10 -5.61 -36.74 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.67 Total: 3.03 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: -1.30 Total: 7.84 kcal Atomic # 7 Polarization: -37.09 SS G_CDS: 0.30 Total: -36.79 kcal Atomic # 8 Polarization: -30.14 SS G_CDS: -0.97 Total: -31.11 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.13 -5.61 -36.74 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308527941.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.346 kcal (2) G-P(sol) polarization free energy of solvation -31.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds