Wall clock time and date at job start Sun Mar 29 2020 22:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86801 * 119.99730 * 2 1 4 4 H 1.48501 * 109.47174 * 93.07047 * 3 2 1 5 5 H 1.48508 * 109.46768 * 213.06937 * 3 2 1 6 6 H 1.48494 * 109.47671 * 333.06764 * 3 2 1 7 7 C 1.38808 * 119.99806 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00198 * 18.91532 * 7 2 1 9 9 N 1.36936 * 119.99830 * 198.90914 * 7 2 1 10 10 C 1.46919 * 120.60826 * 29.54292 * 9 7 2 11 11 C 1.53174 * 108.78535 * 126.42337 * 10 9 7 12 12 C 1.53011 * 109.34135 * 54.56110 * 11 10 9 13 13 C 1.53375 * 109.41742 * 298.40159 * 12 11 10 14 14 C 1.52569 * 109.44332 * 181.30041 * 13 12 11 15 15 C 1.54178 * 112.71047 * 120.61035 * 14 13 12 16 16 S 1.83939 * 102.58646 * 24.48026 * 15 14 13 17 17 C 1.54520 * 108.40439 * 304.09612 * 13 12 11 18 18 C 1.46886 * 120.60752 * 209.26358 * 9 7 2 19 19 H 0.97008 * 119.99965 * 359.97438 * 1 2 3 20 20 H 1.09008 * 109.58386 * 246.21289 * 10 9 7 21 21 H 1.08996 * 109.58741 * 6.62736 * 10 9 7 22 22 H 1.09000 * 109.49587 * 174.52382 * 11 10 9 23 23 H 1.09003 * 109.49454 * 294.57132 * 11 10 9 24 24 H 1.08993 * 109.47968 * 58.38712 * 12 11 10 25 25 H 1.09007 * 109.47923 * 178.41697 * 12 11 10 26 26 H 1.09001 * 108.84347 * 241.45886 * 14 13 12 27 27 H 1.09000 * 108.84908 * 359.90135 * 14 13 12 28 28 H 1.08994 * 110.78821 * 142.75677 * 15 14 13 29 29 H 1.09003 * 110.78198 * 266.01734 * 15 14 13 30 30 H 1.08999 * 110.77455 * 332.50754 * 17 13 12 31 31 H 1.08994 * 110.77549 * 95.92946 * 17 13 12 32 32 H 1.09000 * 109.60569 * 353.65050 * 18 9 7 33 33 H 1.09003 * 109.60421 * 114.14547 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.5626 2.0090 1.3981 5 1 3.5138 1.4598 -0.7640 6 1 1.4167 2.6706 -0.6341 7 6 2.0102 -1.2021 -0.0005 8 1 1.5140 -2.1121 -0.3041 9 7 3.3242 -1.2343 0.3838 10 6 3.8412 -0.2680 1.3622 11 6 4.5240 -1.0346 2.4991 12 6 5.5862 -1.9680 1.9145 13 6 4.9145 -2.9859 0.9845 14 6 5.9688 -3.9371 0.4265 15 6 5.6913 -5.4104 0.7864 16 16 3.8730 -5.4196 1.0643 17 6 3.8191 -3.7276 1.7829 18 6 4.2410 -2.2394 -0.1701 19 1 -0.4850 0.8401 0.0004 20 1 4.5640 0.3897 0.8793 21 1 3.0175 0.3227 1.7629 22 1 4.9964 -0.3283 3.1818 23 1 3.7813 -1.6214 3.0396 24 1 6.3125 -1.3836 1.3498 25 1 6.0929 -2.4940 2.7237 26 1 5.9930 -3.8384 -0.6587 27 1 6.9431 -3.6566 0.8266 28 1 5.9595 -6.0678 -0.0406 29 1 6.2256 -5.6943 1.6932 30 1 4.0634 -3.7507 2.8449 31 1 2.8439 -3.2690 1.6194 32 1 3.6818 -2.9458 -0.7837 33 1 5.0011 -1.7465 -0.7762 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000334625897.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:17:32 Heat of formation + Delta-G solvation = -2.286269 kcal Electronic energy + Delta-G solvation = -14767.311254 eV Core-core repulsion = 12532.562684 eV Total energy + Delta-G solvation = -2234.748570 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.104 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44681 -36.38712 -34.08727 -32.66369 -30.91170 -28.29272 -27.12503 -25.06754 -23.68579 -22.12419 -19.51654 -18.71963 -17.61640 -17.18382 -16.29708 -15.94051 -15.43344 -15.26767 -15.03003 -14.44401 -14.09895 -13.91260 -13.41375 -13.27617 -13.01281 -12.77997 -12.52970 -12.41387 -12.10240 -11.95435 -11.75327 -11.59642 -11.25332 -11.08121 -10.71282 -10.59296 -8.88357 -8.68612 -8.16368 -5.50538 1.04447 1.28918 1.40416 1.49853 1.49975 2.41354 3.07302 3.34182 3.58312 3.72672 3.96398 4.13228 4.23786 4.28816 4.34713 4.40415 4.63757 4.70069 4.76134 4.81244 4.90297 4.98601 5.01541 5.04490 5.08317 5.21971 5.32083 5.39283 5.52020 5.88699 6.13588 6.93499 7.63224 8.03079 9.03987 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.038666 B = 0.009920 C = 0.008799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 723.975662 B = 2822.043408 C = 3181.415930 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.961 5.961 2 C -0.037 4.037 3 Si 0.954 3.046 4 H -0.268 1.268 5 H -0.265 1.265 6 H -0.314 1.314 7 C -0.243 4.243 8 H 0.043 0.957 9 N -0.616 5.616 10 C 0.115 3.885 11 C -0.133 4.133 12 C -0.091 4.091 13 C -0.074 4.074 14 C -0.111 4.111 15 C -0.042 4.042 16 S -0.383 6.383 17 C -0.026 4.026 18 C 0.158 3.842 19 H 0.261 0.739 20 H 0.033 0.967 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.053 0.947 24 H 0.075 0.925 25 H 0.087 0.913 26 H 0.077 0.923 27 H 0.105 0.895 28 H 0.116 0.884 29 H 0.107 0.893 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.045 0.955 33 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.177 -5.847 4.601 18.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.607 5.607 2 C -0.231 4.231 3 Si 0.782 3.218 4 H -0.194 1.194 5 H -0.189 1.189 6 H -0.243 1.243 7 C -0.373 4.373 8 H 0.060 0.940 9 N -0.340 5.340 10 C -0.010 4.010 11 C -0.172 4.172 12 C -0.130 4.130 13 C -0.078 4.078 14 C -0.150 4.150 15 C -0.189 4.189 16 S -0.157 6.157 17 C -0.174 4.174 18 C 0.033 3.967 19 H 0.070 0.930 20 H 0.051 0.949 21 H 0.065 0.935 22 H 0.102 0.898 23 H 0.072 0.928 24 H 0.094 0.906 25 H 0.105 0.895 26 H 0.095 0.905 27 H 0.124 0.876 28 H 0.134 0.866 29 H 0.125 0.875 30 H 0.111 0.889 31 H 0.096 0.904 32 H 0.064 0.936 33 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 16.170 -6.628 4.358 18.011 hybrid contribution 0.008 1.691 -0.043 1.691 sum 16.178 -4.937 4.314 17.456 Atomic orbital electron populations 1.69975 1.07564 1.27185 1.55976 1.25982 0.95835 1.01150 1.00147 0.85852 0.78118 0.79723 0.78060 1.19417 1.18936 1.24269 1.18753 0.86065 0.92931 1.39547 0.93971 1.44424 1.06527 1.36219 1.46830 1.21487 0.96663 0.92230 0.90610 1.21995 0.98470 0.99311 0.97459 1.21671 0.96713 0.96057 0.98527 1.21722 0.93641 0.96196 0.96210 1.22018 0.99243 0.91191 1.02576 1.24192 0.89056 0.99684 1.06015 1.88204 1.16989 1.26414 1.84068 1.24263 1.02591 0.89643 1.00927 1.21210 0.91820 0.90200 0.93454 0.93034 0.94918 0.93494 0.89811 0.92806 0.90639 0.89497 0.90465 0.87632 0.86560 0.87493 0.88946 0.90435 0.93620 0.94474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.58 13.97 21.65 0.30 -61.27 16 2 C -0.04 -2.17 5.24 84.86 0.44 -1.73 16 3 Si 0.95 46.94 24.35 68.60 1.67 48.61 16 4 H -0.27 -12.23 6.40 99.48 0.64 -11.60 16 5 H -0.26 -12.48 6.93 99.48 0.69 -11.79 16 6 H -0.31 -15.80 7.11 99.48 0.71 -15.09 16 7 C -0.24 -13.97 9.64 84.03 0.81 -13.16 16 8 H 0.04 2.73 8.06 -2.91 -0.02 2.71 16 9 N -0.62 -28.44 1.95 -699.43 -1.37 -29.81 16 10 C 0.11 4.66 4.20 86.36 0.36 5.02 16 11 C -0.13 -4.07 5.80 30.66 0.18 -3.89 16 12 C -0.09 -2.22 4.22 30.72 0.13 -2.09 16 13 C -0.07 -2.11 0.67 -51.65 -0.03 -2.15 16 14 C -0.11 -2.31 5.69 30.85 0.18 -2.13 16 15 C -0.04 -0.85 7.46 72.38 0.54 -0.31 16 16 S -0.38 -12.24 23.26 -56.49 -1.31 -13.55 16 17 C -0.03 -0.87 4.93 72.50 0.36 -0.52 16 18 C 0.16 5.99 4.72 86.34 0.41 6.39 16 19 H 0.26 15.88 8.31 -92.70 -0.77 15.11 16 20 H 0.03 1.27 7.20 -2.38 -0.02 1.26 16 21 H 0.05 2.15 4.52 -2.39 -0.01 2.14 16 22 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 23 H 0.05 1.78 6.73 -2.39 -0.02 1.76 16 24 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 25 H 0.09 1.64 8.14 -2.38 -0.02 1.62 16 26 H 0.08 1.63 7.54 -2.39 -0.02 1.61 16 27 H 0.11 1.56 7.55 -2.39 -0.02 1.55 16 28 H 0.12 1.99 8.14 -2.39 -0.02 1.97 16 29 H 0.11 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.09 2.71 7.47 -2.39 -0.02 2.70 16 31 H 0.08 3.35 6.80 -2.39 -0.02 3.33 16 32 H 0.05 1.92 7.93 -2.39 -0.02 1.90 16 33 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 Total: -1.00 -68.34 257.51 3.65 -64.69 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: 0.99 Total: 5.90 kcal Atomic # 6 Polarization: -17.93 SS G_CDS: 3.37 Total: -14.56 kcal Atomic # 7 Polarization: -90.02 SS G_CDS: -1.06 Total: -91.08 kcal Atomic # 14 Polarization: 46.94 SS G_CDS: 1.67 Total: 48.61 kcal Atomic # 16 Polarization: -12.24 SS G_CDS: -1.31 Total: -13.55 kcal Total: -68.34 3.65 -64.69 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000334625897.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.401 kcal (2) G-P(sol) polarization free energy of solvation -68.339 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.652 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds