Wall clock time and date at job start Sun Mar 29 2020 21:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29418 * 125.69726 * 2 1 4 4 N 1.26399 * 116.47661 * 179.67947 * 3 2 1 5 5 C 1.29420 * 116.47374 * 0.52530 * 4 3 2 6 6 C 1.50699 * 125.69575 * 179.77215 * 5 4 3 7 7 H 1.09000 * 109.47247 * 164.69545 * 6 5 4 8 8 C 1.53006 * 109.46866 * 284.69377 * 6 5 4 9 9 N 1.46899 * 109.47244 * 44.69344 * 6 5 4 10 10 C 1.46897 * 111.00133 * 155.00305 * 9 6 5 11 11 C 1.50705 * 109.47250 * 180.02562 * 10 9 6 12 12 H 1.07998 * 119.99737 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99980 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99929 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99997 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47328 * 89.99779 * 15 13 11 17 17 H 1.48501 * 109.47503 * 209.99599 * 15 13 11 18 18 H 1.48504 * 109.47055 * 329.99785 * 15 13 11 19 19 S 1.71217 * 125.69786 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.47306 * 270.04560 * 1 2 3 21 21 H 1.08996 * 109.47236 * 30.04806 * 1 2 3 22 22 H 1.09003 * 109.47280 * 150.05003 * 1 2 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 8 6 5 24 24 H 1.08993 * 109.46955 * 300.00219 * 8 6 5 25 25 H 1.09000 * 109.47050 * 60.00048 * 8 6 5 26 26 H 1.00901 * 110.99931 * 31.04632 * 9 6 5 27 27 H 1.09003 * 109.46826 * 299.99875 * 10 9 6 28 28 H 1.08993 * 109.47326 * 59.99934 * 10 9 6 29 29 H 0.97000 * 119.99551 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0063 5 6 3.8936 -0.3875 0.0015 6 6 5.3232 -0.8642 0.0025 7 1 5.3538 -1.9206 0.2689 8 6 5.9258 -0.6719 -1.3907 9 7 6.0971 -0.0896 0.9818 10 6 7.2637 -0.8493 1.4505 11 6 8.0309 -0.0247 2.4519 12 1 7.6864 0.9648 2.7136 13 6 9.1730 -0.5333 3.0332 14 7 9.5926 -1.7382 2.7141 15 14 10.1242 0.4890 4.2738 16 1 9.6072 0.2175 5.6393 17 1 11.5641 0.1315 4.2098 18 1 9.9576 1.9306 3.9590 19 16 2.5060 -1.3905 0.0006 20 1 -0.3634 0.0008 1.0277 21 1 -0.3633 0.8895 -0.5146 22 1 -0.3634 -0.8904 -0.5131 23 1 6.9600 -1.0163 -1.3899 24 1 5.3517 -1.2466 -2.1174 25 1 5.8953 0.3846 -1.6572 26 1 5.5169 0.1966 1.7562 27 1 6.9298 -1.7739 1.9214 28 1 7.9080 -1.0849 0.6036 29 1 10.3964 -2.0958 3.1228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391968101.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:09 Heat of formation + Delta-G solvation = 55.692448 kcal Electronic energy + Delta-G solvation = -13170.736477 eV Core-core repulsion = 10834.961709 eV Total energy + Delta-G solvation = -2335.774768 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.18321 -36.51311 -33.29391 -32.42697 -30.25205 -28.21133 -26.21392 -25.30722 -22.69977 -21.36684 -19.25389 -18.93153 -16.68891 -15.78771 -15.37873 -14.77216 -14.38555 -14.08951 -13.55807 -13.22279 -12.92489 -12.78019 -12.36937 -11.85670 -11.64501 -11.60657 -11.02099 -10.73009 -10.67200 -10.31455 -10.10538 -9.90070 -9.65999 -9.51354 -9.18316 -8.51344 -7.42481 -6.06182 -4.07801 0.50441 0.93935 1.41789 2.69415 3.31822 3.37842 3.43686 4.01732 4.41844 4.59000 4.82798 5.02732 5.16666 5.29171 5.30735 5.46233 5.63678 5.65781 5.73653 6.09771 6.27823 6.62919 7.12757 7.30966 7.73937 8.05680 8.28074 8.49720 8.70825 9.00995 9.57207 11.04970 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.048688 B = 0.005610 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.958064 B = 4990.284283 C = 5187.722638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.031 4.031 3 N -0.263 5.263 4 N -0.238 5.238 5 C 0.003 3.997 6 C 0.163 3.837 7 H 0.059 0.941 8 C -0.131 4.131 9 N -0.667 5.667 10 C 0.193 3.807 11 C -0.514 4.514 12 H 0.064 0.936 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.900 3.100 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.272 1.272 19 S 0.146 5.854 20 H 0.088 0.912 21 H 0.091 0.909 22 H 0.082 0.918 23 H 0.073 0.927 24 H 0.047 0.953 25 H 0.067 0.933 26 H 0.335 0.665 27 H -0.012 1.012 28 H 0.034 0.966 29 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.204 -2.209 -6.379 17.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.310 4.310 3 N -0.101 5.101 4 N -0.074 5.074 5 C -0.277 4.277 6 C 0.049 3.951 7 H 0.076 0.924 8 C -0.190 4.190 9 N -0.300 5.300 10 C 0.067 3.933 11 C -0.553 4.553 12 H 0.082 0.918 13 C -0.145 4.145 14 N -0.538 5.538 15 Si 0.728 3.272 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.197 1.197 19 S 0.390 5.610 20 H 0.107 0.893 21 H 0.110 0.890 22 H 0.100 0.900 23 H 0.092 0.908 24 H 0.066 0.934 25 H 0.087 0.913 26 H 0.152 0.848 27 H 0.006 0.994 28 H 0.052 0.948 29 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.657 -1.630 -6.815 17.154 hybrid contribution 0.205 -0.166 1.308 1.335 sum -15.452 -1.796 -5.507 16.502 Atomic orbital electron populations 1.20322 0.84247 1.04355 1.04120 1.29179 1.04069 0.92086 1.05649 1.71515 0.97331 1.26889 1.14378 1.71447 1.05359 1.16839 1.13799 1.29685 1.03022 0.92111 1.02901 1.20164 0.81953 0.95730 0.97248 0.92356 1.21776 1.01302 1.02834 0.93097 1.60837 1.09718 1.41683 1.17789 1.19700 0.86754 0.91629 0.95262 1.21154 1.09117 1.02053 1.22932 0.91790 1.24972 0.97307 0.95123 0.97082 1.69958 1.24078 1.16081 1.43647 0.86459 0.78910 0.80631 0.81211 1.20726 1.21200 1.19678 1.83646 0.98586 1.12551 1.66248 0.89346 0.89045 0.89957 0.90760 0.93385 0.91349 0.84785 0.99416 0.94815 0.92865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.54 10.48 36.00 0.38 -0.17 15 2 C -0.03 -0.39 7.53 -13.30 -0.10 -0.49 15 3 N -0.26 -4.39 11.66 32.58 0.38 -4.01 15 4 N -0.24 -4.42 11.64 32.58 0.38 -4.04 15 5 C 0.00 0.04 6.03 -13.29 -0.08 -0.04 15 6 C 0.16 2.94 3.13 -68.86 -0.22 2.73 15 7 H 0.06 1.02 7.80 -51.93 -0.40 0.61 15 8 C -0.13 -2.16 9.40 37.16 0.35 -1.81 15 9 N -0.67 -14.73 6.28 -109.22 -0.69 -15.41 15 10 C 0.19 4.99 5.24 -4.98 -0.03 4.96 15 11 C -0.51 -14.64 9.32 -34.44 -0.32 -14.96 15 12 H 0.06 1.82 7.81 -52.49 -0.41 1.41 15 13 C 0.06 1.62 5.46 -17.82 -0.10 1.52 15 14 N -0.90 -26.59 13.29 55.43 0.74 -25.85 15 15 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 15 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 15 17 H -0.29 -6.85 7.11 56.52 0.40 -6.45 15 18 H -0.27 -6.55 7.11 56.52 0.40 -6.15 15 19 S 0.15 1.81 23.04 -107.50 -2.48 -0.66 15 20 H 0.09 0.58 8.14 -51.93 -0.42 0.16 15 21 H 0.09 0.66 8.14 -51.93 -0.42 0.24 15 22 H 0.08 0.45 8.14 -51.93 -0.42 0.03 15 23 H 0.07 1.28 7.45 -51.93 -0.39 0.89 15 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 15 25 H 0.07 1.19 8.14 -51.93 -0.42 0.77 15 26 H 0.33 7.43 8.34 -39.29 -0.33 7.10 15 27 H -0.01 -0.32 8.06 -51.93 -0.42 -0.74 15 28 H 0.03 0.92 7.43 -51.93 -0.39 0.53 15 29 H 0.26 7.31 8.31 -40.82 -0.34 6.97 15 LS Contribution 269.26 15.07 4.06 4.06 Total: -1.00 -31.72 269.26 -6.33 -38.05 By element: Atomic # 1 Polarization: 2.87 SS G_CDS: -3.58 Total: -0.71 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -0.11 Total: -8.25 kcal Atomic # 7 Polarization: -50.12 SS G_CDS: 0.81 Total: -49.32 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -2.48 Total: -0.66 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -31.72 -6.33 -38.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391968101.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.742 kcal (2) G-P(sol) polarization free energy of solvation -31.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.019 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.050 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds