Wall clock time and date at job start Sun Mar 29 2020 21:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.29418 * 125.69726 * 2 1 4 4 N 1.26399 * 116.47661 * 179.67947 * 3 2 1 5 5 C 1.29420 * 116.47374 * 0.52530 * 4 3 2 6 6 C 1.50699 * 125.69575 * 179.77215 * 5 4 3 7 7 H 1.09000 * 109.47247 * 164.69545 * 6 5 4 8 8 C 1.53006 * 109.46866 * 284.69377 * 6 5 4 9 9 N 1.46899 * 109.47244 * 44.69344 * 6 5 4 10 10 C 1.46897 * 111.00133 * 155.00305 * 9 6 5 11 11 C 1.50705 * 109.47250 * 180.02562 * 10 9 6 12 12 H 1.07998 * 119.99737 * 359.97438 * 11 10 9 13 13 C 1.37873 * 119.99980 * 180.02562 * 11 10 9 14 14 N 1.31519 * 119.99929 * 359.97438 * 13 11 10 15 15 Si 1.86793 * 119.99997 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.47328 * 89.99779 * 15 13 11 17 17 H 1.48501 * 109.47503 * 209.99599 * 15 13 11 18 18 H 1.48504 * 109.47055 * 329.99785 * 15 13 11 19 19 S 1.71217 * 125.69786 * 179.97438 * 2 1 3 20 20 H 1.09007 * 109.47306 * 270.04560 * 1 2 3 21 21 H 1.08996 * 109.47236 * 30.04806 * 1 2 3 22 22 H 1.09003 * 109.47280 * 150.05003 * 1 2 3 23 23 H 1.09001 * 109.47002 * 179.97438 * 8 6 5 24 24 H 1.08993 * 109.46955 * 300.00219 * 8 6 5 25 25 H 1.09000 * 109.47050 * 60.00048 * 8 6 5 26 26 H 1.00901 * 110.99931 * 31.04632 * 9 6 5 27 27 H 1.09003 * 109.46826 * 299.99875 * 10 9 6 28 28 H 1.08993 * 109.47326 * 59.99934 * 10 9 6 29 29 H 0.97000 * 119.99551 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2621 1.0510 0.0000 4 7 3.5097 0.8485 0.0063 5 6 3.8936 -0.3875 0.0015 6 6 5.3232 -0.8642 0.0025 7 1 5.3538 -1.9206 0.2689 8 6 5.9258 -0.6719 -1.3907 9 7 6.0971 -0.0896 0.9818 10 6 7.2637 -0.8493 1.4505 11 6 8.0309 -0.0247 2.4519 12 1 7.6864 0.9648 2.7136 13 6 9.1730 -0.5333 3.0332 14 7 9.5926 -1.7382 2.7141 15 14 10.1242 0.4890 4.2738 16 1 9.6072 0.2175 5.6393 17 1 11.5641 0.1315 4.2098 18 1 9.9576 1.9306 3.9590 19 16 2.5060 -1.3905 0.0006 20 1 -0.3634 0.0008 1.0277 21 1 -0.3633 0.8895 -0.5146 22 1 -0.3634 -0.8904 -0.5131 23 1 6.9600 -1.0163 -1.3899 24 1 5.3517 -1.2466 -2.1174 25 1 5.8953 0.3846 -1.6572 26 1 5.5169 0.1966 1.7562 27 1 6.9298 -1.7739 1.9214 28 1 7.9080 -1.0849 0.6036 29 1 10.3964 -2.0958 3.1228 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391968101.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:46:08 Heat of formation + Delta-G solvation = 31.998105 kcal Electronic energy + Delta-G solvation = -13171.763940 eV Core-core repulsion = 10834.961709 eV Total energy + Delta-G solvation = -2336.802232 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.36225 -38.10425 -35.10498 -33.76893 -31.85017 -29.33805 -28.16590 -26.44294 -24.36864 -23.00936 -20.45666 -20.16225 -18.65802 -17.06650 -16.94455 -16.56197 -15.93094 -15.31901 -14.96365 -14.32311 -14.24580 -13.96524 -13.62876 -13.47729 -13.19721 -13.12391 -12.77510 -12.55028 -12.33643 -12.05016 -11.45751 -11.32939 -11.18577 -10.71039 -10.66822 -10.60266 -9.22797 -8.24548 -6.34681 -0.58504 -0.11809 0.31639 1.40111 1.41506 1.51403 1.53825 2.39068 2.91242 3.09100 3.39010 3.56621 3.87731 4.14896 4.24769 4.39327 4.63686 4.72584 4.75264 4.87383 5.06784 5.08094 5.21020 5.26370 5.59574 5.98641 6.35001 6.57413 6.82504 7.35542 7.56077 8.86808 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.048688 B = 0.005610 C = 0.005396 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 574.958064 B = 4990.284283 C = 5187.722638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.021 4.021 3 N -0.304 5.304 4 N -0.273 5.273 5 C -0.033 4.033 6 C 0.162 3.838 7 H 0.065 0.935 8 C -0.125 4.125 9 N -0.673 5.673 10 C 0.210 3.790 11 C -0.539 4.539 12 H 0.058 0.942 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.970 3.030 16 H -0.271 1.271 17 H -0.278 1.278 18 H -0.269 1.269 19 S 0.224 5.776 20 H 0.107 0.893 21 H 0.098 0.902 22 H 0.113 0.887 23 H 0.060 0.940 24 H 0.080 0.920 25 H 0.054 0.946 26 H 0.332 0.668 27 H -0.031 1.031 28 H 0.014 0.986 29 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.883 -2.633 -6.242 19.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.299 4.299 3 N -0.142 5.142 4 N -0.110 5.110 5 C -0.313 4.313 6 C 0.048 3.952 7 H 0.083 0.917 8 C -0.184 4.184 9 N -0.305 5.305 10 C 0.083 3.917 11 C -0.577 4.577 12 H 0.076 0.924 13 C -0.192 4.192 14 N -0.569 5.569 15 Si 0.794 3.206 16 H -0.197 1.197 17 H -0.204 1.204 18 H -0.194 1.194 19 S 0.469 5.531 20 H 0.125 0.875 21 H 0.117 0.883 22 H 0.131 0.869 23 H 0.079 0.921 24 H 0.099 0.901 25 H 0.073 0.927 26 H 0.149 0.851 27 H -0.013 1.013 28 H 0.032 0.968 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.352 -2.059 -6.692 18.712 hybrid contribution 0.555 -0.105 1.218 1.343 sum -16.797 -2.164 -5.474 17.799 Atomic orbital electron populations 1.20658 0.80637 1.06258 1.05816 1.30052 1.06122 0.91624 1.02132 1.71493 0.97042 1.28592 1.17087 1.71407 1.06810 1.18362 1.14420 1.29317 1.03702 0.93195 1.05118 1.20127 0.83079 0.95442 0.96506 0.91731 1.21722 1.01007 1.02446 0.93236 1.60671 1.09718 1.42160 1.17964 1.19321 0.87746 0.90856 0.93803 1.21488 1.10052 1.02179 1.23979 0.92405 1.25854 0.98154 0.96274 0.98914 1.70062 1.24620 1.17527 1.44681 0.85378 0.77564 0.78846 0.78788 1.19658 1.20353 1.19407 1.83285 0.95200 1.10164 1.64489 0.87492 0.88304 0.86872 0.92128 0.90069 0.92696 0.85130 1.01335 0.96803 0.92470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.48 71.23 0.75 -0.12 15 2 C -0.02 -0.47 7.53 88.46 0.67 0.19 15 3 N -0.30 -9.90 11.66 -50.85 -0.59 -10.49 15 4 N -0.27 -10.14 11.64 -50.85 -0.59 -10.73 15 5 C -0.03 -1.10 6.03 88.46 0.53 -0.56 15 6 C 0.16 5.89 3.13 44.17 0.14 6.03 15 7 H 0.06 2.25 7.80 -2.39 -0.02 2.23 15 8 C -0.12 -4.14 9.40 71.98 0.68 -3.47 15 9 N -0.67 -30.62 6.28 -499.46 -3.13 -33.75 15 10 C 0.21 11.25 5.24 85.56 0.45 11.70 15 11 C -0.54 -31.35 9.32 25.60 0.24 -31.11 15 12 H 0.06 3.36 7.81 -2.91 -0.02 3.33 15 13 C 0.01 0.39 5.46 84.65 0.46 0.85 15 14 N -0.93 -55.59 13.29 21.45 0.28 -55.31 15 15 Si 0.97 44.94 29.54 68.60 2.03 46.96 15 16 H -0.27 -12.08 7.11 99.48 0.71 -11.37 15 17 H -0.28 -12.46 7.11 99.48 0.71 -11.75 15 18 H -0.27 -12.28 7.11 99.48 0.71 -11.58 15 19 S 0.22 5.01 23.04 -56.49 -1.30 3.71 15 20 H 0.11 0.98 8.14 -2.38 -0.02 0.96 15 21 H 0.10 1.11 8.14 -2.39 -0.02 1.09 15 22 H 0.11 0.69 8.14 -2.39 -0.02 0.67 15 23 H 0.06 2.14 7.45 -2.39 -0.02 2.12 15 24 H 0.08 2.11 8.14 -2.39 -0.02 2.09 15 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 15 26 H 0.33 15.21 8.34 -89.69 -0.75 14.46 15 27 H -0.03 -1.74 8.06 -2.39 -0.02 -1.76 15 28 H 0.01 0.79 7.43 -2.39 -0.02 0.77 15 29 H 0.27 14.92 8.31 -92.71 -0.77 14.15 15 Total: -1.00 -69.75 269.26 1.01 -68.74 By element: Atomic # 1 Polarization: 6.94 SS G_CDS: 0.41 Total: 7.35 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 3.91 Total: -16.48 kcal Atomic # 7 Polarization: -106.24 SS G_CDS: -4.03 Total: -110.28 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.96 kcal Atomic # 16 Polarization: 5.01 SS G_CDS: -1.30 Total: 3.71 kcal Total: -69.75 1.01 -68.74 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391968101.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.736 kcal (2) G-P(sol) polarization free energy of solvation -69.747 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds