Wall clock time and date at job start Sun Mar 29 2020 22:12:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 115.56515 * 2 1 4 4 C 1.53076 * 117.51265 * 214.29650 * 2 1 3 5 5 C 1.52997 * 117.49465 * 145.68727 * 2 1 3 6 6 H 1.09005 * 117.49928 * 214.99961 * 5 2 1 7 7 C 1.50701 * 117.50114 * 0.02562 * 5 2 1 8 8 O 1.20819 * 119.99635 * 359.91011 * 7 5 2 9 9 O 1.34229 * 119.99631 * 179.91755 * 7 5 2 10 10 C 1.45206 * 116.99457 * 180.02562 * 9 7 5 11 11 C 1.50706 * 109.46849 * 179.97438 * 10 9 7 12 12 O 1.21288 * 120.00284 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99730 * 179.97438 * 11 10 9 14 14 C 1.37095 * 119.99910 * 179.97438 * 13 11 10 15 15 H 1.08005 * 119.99959 * 0.02562 * 14 13 11 16 16 C 1.38950 * 120.00053 * 180.02562 * 14 13 11 17 17 N 1.31413 * 119.99930 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99918 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47057 * 179.97438 * 18 16 14 20 20 H 1.48500 * 109.47389 * 300.00155 * 18 16 14 21 21 H 1.48504 * 109.47102 * 60.00503 * 18 16 14 22 22 H 1.08996 * 109.47133 * 274.31719 * 1 2 3 23 23 H 1.09003 * 109.46929 * 34.31448 * 1 2 3 24 24 H 1.09000 * 109.46886 * 154.30965 * 1 2 3 25 25 H 1.08992 * 117.49715 * 145.04173 * 4 2 1 26 26 H 1.08999 * 117.53278 * 359.97438 * 4 2 1 27 27 H 1.08996 * 109.47426 * 59.99829 * 10 9 7 28 28 H 1.09002 * 109.46778 * 299.99167 * 10 9 7 29 29 H 0.96996 * 119.99887 * 0.02562 * 13 11 10 30 30 H 0.97001 * 119.99781 * 359.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 2.0004 0.9833 0.0000 4 6 2.2371 -1.1216 -0.7650 5 6 2.2363 -1.1210 0.7650 6 1 3.1713 -0.8751 1.2687 7 6 1.3719 -2.1409 1.4604 8 8 0.1683 -2.0531 1.4019 9 8 1.9391 -3.1467 2.1448 10 6 1.0450 -4.0923 2.7889 11 6 1.8554 -5.1433 3.5031 12 8 3.0671 -5.0994 3.4727 13 7 1.2335 -6.1314 4.1765 14 6 1.9706 -7.0877 4.8258 15 1 3.0496 -7.0491 4.7980 16 6 1.3295 -8.1067 5.5196 17 7 0.0166 -8.1540 5.5529 18 14 2.3339 -9.4094 6.4049 19 1 1.4195 -10.3762 7.0641 20 1 3.1894 -10.1256 5.4249 21 1 3.1911 -8.7616 7.4300 22 1 -0.3633 0.0774 1.0247 23 1 -0.3633 0.8488 -0.5794 24 1 -0.3633 -0.9261 -0.4455 25 1 3.1723 -0.8758 -1.2679 26 1 1.6127 -1.8599 -1.2680 27 1 0.4161 -4.5681 2.0365 28 1 0.4169 -3.5665 3.5079 29 1 0.2645 -6.1663 4.2011 30 1 -0.5048 -7.4774 5.0935 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731234319.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:16 Heat of formation + Delta-G solvation = -120.815815 kcal Electronic energy + Delta-G solvation = -15219.006228 eV Core-core repulsion = 12400.531866 eV Total energy + Delta-G solvation = -2818.474363 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.89784 -40.35542 -38.63248 -37.06810 -36.43516 -33.34637 -30.49651 -29.44110 -26.68555 -25.42464 -22.35354 -21.84817 -21.15672 -20.12876 -18.93055 -18.38779 -17.80395 -17.13573 -16.62196 -16.20235 -15.70520 -15.52529 -14.98977 -14.31334 -14.11840 -13.84931 -13.54305 -13.42878 -13.21549 -12.85050 -12.45118 -11.97155 -11.94780 -11.90606 -11.62142 -11.44750 -11.30273 -11.01127 -10.60831 -10.23419 -9.01062 -6.17268 0.95814 1.29862 1.43419 1.55941 1.83629 1.84093 2.40302 2.69362 2.86214 3.07924 3.51460 3.61166 3.78798 3.87893 3.98211 4.01332 4.10343 4.41167 4.73319 4.82724 4.92452 4.97189 5.11592 5.23377 5.49704 5.54307 5.85632 6.40308 6.54744 6.64130 7.26966 7.70066 8.45790 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.075969 B = 0.004746 C = 0.004533 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 368.483009 B = 5898.815545 C = 6175.774389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.105 4.105 3 H 0.150 0.850 4 C -0.134 4.134 5 C -0.191 4.191 6 H 0.149 0.851 7 C 0.483 3.517 8 O -0.524 6.524 9 O -0.346 6.346 10 C 0.072 3.928 11 C 0.439 3.561 12 O -0.613 6.613 13 N -0.571 5.571 14 C -0.415 4.415 15 H 0.079 0.921 16 C -0.036 4.036 17 N -0.909 5.909 18 Si 1.136 2.864 19 H -0.271 1.271 20 H -0.270 1.270 21 H -0.271 1.271 22 H 0.049 0.951 23 H 0.077 0.923 24 H 0.045 0.955 25 H 0.139 0.861 26 H 0.093 0.907 27 H 0.106 0.894 28 H 0.106 0.894 29 H 0.388 0.612 30 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.593 13.792 -10.260 17.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.123 4.123 3 H 0.167 0.833 4 C -0.171 4.171 5 C -0.209 4.209 6 H 0.167 0.833 7 C 0.328 3.672 8 O -0.414 6.414 9 O -0.261 6.261 10 C -0.005 4.005 11 C 0.226 3.774 12 O -0.499 6.499 13 N -0.210 5.210 14 C -0.544 4.544 15 H 0.097 0.903 16 C -0.235 4.235 17 N -0.547 5.547 18 Si 0.955 3.045 19 H -0.196 1.196 20 H -0.196 1.196 21 H -0.196 1.196 22 H 0.068 0.932 23 H 0.096 0.904 24 H 0.064 0.936 25 H 0.157 0.843 26 H 0.112 0.888 27 H 0.124 0.876 28 H 0.124 0.876 29 H 0.223 0.777 30 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.906 12.441 -9.343 15.585 hybrid contribution -0.673 1.126 -0.674 1.475 sum 0.233 13.568 -10.018 16.867 Atomic orbital electron populations 1.21416 0.92452 1.01811 1.01806 1.22727 0.95930 0.94699 0.98924 0.83266 1.23357 1.04474 1.00909 0.88376 1.22010 1.02646 0.99147 0.97141 0.83301 1.23523 0.87824 0.80252 0.75605 1.90637 1.16705 1.74416 1.59623 1.86561 1.41153 1.36541 1.61868 1.22473 0.90870 0.89295 0.97856 1.20103 0.88435 0.84616 0.84210 1.90529 1.15789 1.77508 1.66069 1.41794 1.08971 1.24025 1.46224 1.20601 0.93662 1.07391 1.32742 0.90303 1.27971 0.97545 1.00996 0.96962 1.70975 1.05632 1.36114 1.42009 0.82611 0.73420 0.72792 0.75670 1.19589 1.19558 1.19583 0.93152 0.90407 0.93589 0.84250 0.88824 0.87627 0.87602 0.77690 0.92861 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.30 8.43 71.98 0.61 -1.70 16 2 C -0.11 -1.72 6.41 -10.77 -0.07 -1.79 16 3 H 0.15 1.52 8.14 -2.39 -0.02 1.50 16 4 C -0.13 -2.20 9.88 30.62 0.30 -1.90 16 5 C -0.19 -4.21 6.30 -11.54 -0.07 -4.28 16 6 H 0.15 2.87 8.14 -2.38 -0.02 2.85 16 7 C 0.48 15.22 7.72 71.24 0.55 15.77 16 8 O -0.52 -17.58 12.86 21.98 0.28 -17.29 16 9 O -0.35 -13.27 9.76 -45.06 -0.44 -13.71 16 10 C 0.07 2.79 5.94 71.24 0.42 3.21 16 11 C 0.44 21.94 7.86 87.66 0.69 22.63 16 12 O -0.61 -35.85 16.08 15.74 0.25 -35.60 16 13 N -0.57 -29.48 5.28 -306.98 -1.62 -31.10 16 14 C -0.42 -23.74 9.68 84.04 0.81 -22.93 16 15 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 16 C -0.04 -1.92 5.50 84.93 0.47 -1.45 16 17 N -0.91 -50.29 13.68 21.66 0.30 -49.99 16 18 Si 1.14 47.64 29.92 68.60 2.05 49.69 16 19 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 20 H -0.27 -10.75 7.11 99.48 0.71 -10.04 16 21 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 22 H 0.05 1.18 7.26 -2.39 -0.02 1.16 16 23 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 24 H 0.04 1.06 7.02 -2.39 -0.02 1.04 16 25 H 0.14 1.47 8.14 -2.39 -0.02 1.45 16 26 H 0.09 1.71 8.05 -2.39 -0.02 1.69 16 27 H 0.11 3.63 8.13 -2.39 -0.02 3.61 16 28 H 0.11 3.64 8.13 -2.39 -0.02 3.62 16 29 H 0.39 18.21 6.73 -92.71 -0.62 17.58 16 30 H 0.26 13.95 6.78 -92.71 -0.63 13.32 16 Total: -1.00 -72.34 268.47 5.21 -67.13 By element: Atomic # 1 Polarization: 22.62 SS G_CDS: 0.68 Total: 23.30 kcal Atomic # 6 Polarization: 3.86 SS G_CDS: 3.71 Total: 7.57 kcal Atomic # 7 Polarization: -79.77 SS G_CDS: -1.33 Total: -81.09 kcal Atomic # 8 Polarization: -66.70 SS G_CDS: 0.10 Total: -66.60 kcal Atomic # 14 Polarization: 47.64 SS G_CDS: 2.05 Total: 49.69 kcal Total: -72.34 5.21 -67.13 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731234319.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.687 kcal (2) G-P(sol) polarization free energy of solvation -72.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.028 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.212 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds