Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00267 * 2 1 4 4 H 1.48502 * 109.47227 * 269.99744 * 3 2 1 5 5 H 1.48503 * 109.47363 * 29.99802 * 3 2 1 6 6 H 1.48501 * 109.47500 * 149.99541 * 3 2 1 7 7 C 1.38954 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00300 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00131 * 179.97438 * 10 9 7 13 13 O 1.45197 * 109.47538 * 180.02562 * 12 10 9 14 14 C 1.34223 * 117.00370 * 180.02562 * 13 12 10 15 15 O 1.20830 * 119.99676 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00330 * 179.97438 * 14 13 12 17 17 C 1.53781 * 113.61615 * 179.97438 * 16 14 13 18 18 C 1.53786 * 87.17350 * 219.89494 * 17 16 14 19 19 C 1.53781 * 113.69134 * 82.46277 * 16 14 13 20 20 H 0.97002 * 119.99913 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00286 * 359.97438 * 9 7 2 22 22 H 1.09009 * 109.46531 * 60.00076 * 12 10 9 23 23 H 1.08993 * 109.47204 * 300.00323 * 12 10 9 24 24 H 1.08999 * 112.84914 * 311.19807 * 16 14 13 25 25 H 1.09002 * 113.61445 * 334.48493 * 17 16 14 26 26 H 1.09002 * 113.61408 * 105.30224 * 17 16 14 27 27 H 1.08992 * 113.61675 * 140.02412 * 18 17 16 28 28 H 1.09000 * 113.60973 * 270.92699 * 18 17 16 29 29 H 1.09005 * 113.61471 * 254.54463 * 19 16 14 30 30 H 1.08996 * 113.61178 * 25.35805 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 8 2.1872 -5.9667 0.0039 14 6 1.6742 -7.2070 0.0041 15 8 0.4763 -7.3653 0.0033 16 6 2.5921 -8.4021 0.0052 17 6 1.8499 -9.7490 0.0059 18 6 2.9182 -10.2506 0.9918 19 6 3.1140 -8.7790 1.4018 20 1 -0.4850 0.8401 -0.0004 21 1 0.3533 -2.3907 0.0005 22 1 0.6174 -4.9213 -0.8881 23 1 0.6167 -4.9201 0.8919 24 1 3.3751 -8.3351 -0.7500 25 1 0.8496 -9.6961 0.4357 26 1 1.8703 -10.2593 -0.9571 27 1 2.5175 -10.8775 1.7883 28 1 3.7900 -10.6883 0.5054 29 1 4.1565 -8.5067 1.5665 30 1 2.4599 -8.4598 2.2131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000731238308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = -108.847353 kcal Electronic energy + Delta-G solvation = -15179.951179 eV Core-core repulsion = 12361.995808 eV Total energy + Delta-G solvation = -2817.955371 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.60023 -38.54937 -37.71509 -35.90780 -33.98617 -31.37156 -28.86622 -26.81312 -25.81633 -24.51082 -21.50883 -19.57341 -19.42174 -18.05564 -17.76873 -16.46291 -16.28943 -15.67987 -15.35352 -14.61321 -14.08006 -13.98899 -13.51547 -12.79153 -12.64968 -12.51766 -12.08600 -11.93490 -11.61588 -11.37874 -11.12572 -10.75828 -10.60690 -10.43522 -10.36703 -10.30860 -10.14835 -9.59572 -8.50337 -8.07290 -6.49106 -3.91135 2.34056 2.80074 3.13987 3.23993 3.30414 3.75251 4.12447 4.27694 4.38495 4.56365 4.61467 4.86146 5.16041 5.19102 5.39137 5.47384 5.55977 5.61090 5.70522 5.71954 5.76177 5.85230 6.07958 6.20223 6.69415 7.48598 7.89213 8.00018 8.49922 9.08078 9.40582 9.90742 10.68218 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.076212 B = 0.004702 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.306711 B = 5953.844314 C = 6208.843494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.025 3.975 3 Si 0.934 3.066 4 H -0.277 1.277 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.303 4.303 8 H 0.106 0.894 9 N -0.553 5.553 10 C 0.439 3.561 11 O -0.576 6.576 12 C 0.059 3.941 13 O -0.324 6.324 14 C 0.466 3.534 15 O -0.516 6.516 16 C -0.110 4.110 17 C -0.120 4.120 18 C -0.141 4.141 19 C -0.122 4.122 20 H 0.274 0.726 21 H 0.395 0.605 22 H 0.086 0.914 23 H 0.085 0.915 24 H 0.125 0.875 25 H 0.096 0.904 26 H 0.075 0.925 27 H 0.074 0.926 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.976 -15.334 1.005 15.493 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.178 4.178 3 Si 0.761 3.239 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.432 4.432 8 H 0.124 0.876 9 N -0.191 5.191 10 C 0.223 3.777 11 O -0.460 6.460 12 C -0.019 4.019 13 O -0.238 6.238 14 C 0.309 3.691 15 O -0.405 6.405 16 C -0.130 4.130 17 C -0.158 4.158 18 C -0.178 4.178 19 C -0.160 4.160 20 H 0.084 0.916 21 H 0.228 0.772 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.143 0.857 25 H 0.114 0.886 26 H 0.094 0.906 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 2.298 -15.168 1.012 15.374 hybrid contribution -0.483 1.006 -0.091 1.120 sum 1.815 -14.162 0.921 14.307 Atomic orbital electron populations 1.69617 1.06012 1.28467 1.49738 1.25312 0.95681 0.99860 0.96902 0.85795 0.79229 0.80409 0.78495 1.20262 1.20812 1.19271 1.19734 0.93486 0.81785 1.48171 0.87620 1.41711 1.09362 1.04101 1.63896 1.19345 0.88340 0.84105 0.85872 1.90560 1.13432 1.86817 1.55206 1.22739 0.90950 0.84785 1.03385 1.86571 1.40300 1.14276 1.82695 1.23665 0.88578 0.84767 0.72125 1.90629 1.16925 1.86849 1.46103 1.22558 0.98698 0.89897 1.01801 1.22922 0.99351 0.92907 1.00606 1.22870 0.99323 0.96169 0.99462 1.22887 1.02516 0.95961 0.94603 0.91637 0.77164 0.89625 0.89664 0.85720 0.88585 0.90605 0.90709 0.89612 0.89900 0.89498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.27 13.05 55.50 0.72 -23.55 16 2 C 0.02 0.66 5.50 -17.47 -0.10 0.56 16 3 Si 0.93 20.82 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.30 -8.44 9.68 -14.93 -0.14 -8.58 16 8 H 0.11 3.07 7.16 -52.49 -0.38 2.70 16 9 N -0.55 -14.22 5.29 -10.96 -0.06 -14.27 16 10 C 0.44 10.81 7.86 -10.99 -0.09 10.73 16 11 O -0.58 -16.31 16.08 -14.12 -0.23 -16.54 16 12 C 0.06 1.16 5.94 36.01 0.21 1.38 16 13 O -0.32 -6.27 9.75 -45.88 -0.45 -6.72 16 14 C 0.47 7.58 7.49 36.00 0.27 7.85 16 15 O -0.52 -9.28 15.65 -18.75 -0.29 -9.58 16 16 C -0.11 -1.30 4.26 -90.96 -0.39 -1.69 16 17 C -0.12 -1.17 7.40 -25.92 -0.19 -1.36 16 18 C -0.14 -1.11 8.10 -25.80 -0.21 -1.32 16 19 C -0.12 -1.23 7.64 -25.80 -0.20 -1.42 16 20 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 21 H 0.39 9.61 7.90 -40.82 -0.32 9.29 16 22 H 0.09 1.55 8.14 -51.92 -0.42 1.12 16 23 H 0.09 1.54 8.13 -51.93 -0.42 1.11 16 24 H 0.12 1.29 8.14 -51.93 -0.42 0.86 16 25 H 0.10 1.05 7.44 -51.93 -0.39 0.67 16 26 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.09 0.92 8.09 -51.93 -0.42 0.50 16 LS Contribution 270.44 15.07 4.08 4.08 Total: -1.00 -32.28 270.44 -5.68 -37.95 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -3.60 Total: 6.70 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: -0.83 Total: 6.14 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: 0.67 Total: -37.82 kcal Atomic # 8 Polarization: -31.86 SS G_CDS: -0.97 Total: -32.83 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -32.28 -5.68 -37.95 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.896 kcal (2) G-P(sol) polarization free energy of solvation -32.275 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.171 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.676 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.951 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds