Wall clock time and date at job start Sun Mar 29 2020 21:54:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31412 * 1 3 3 Si 1.86797 * 120.00267 * 2 1 4 4 H 1.48502 * 109.47227 * 269.99744 * 3 2 1 5 5 H 1.48503 * 109.47363 * 29.99802 * 3 2 1 6 6 H 1.48501 * 109.47500 * 149.99541 * 3 2 1 7 7 C 1.38954 * 120.00107 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00300 * 180.02562 * 7 2 1 9 9 N 1.37104 * 119.99593 * 0.02562 * 7 2 1 10 10 C 1.34774 * 119.99729 * 180.02562 * 9 7 2 11 11 O 1.21298 * 120.00145 * 359.97438 * 10 9 7 12 12 C 1.50703 * 120.00131 * 179.97438 * 10 9 7 13 13 O 1.45197 * 109.47538 * 180.02562 * 12 10 9 14 14 C 1.34223 * 117.00370 * 180.02562 * 13 12 10 15 15 O 1.20830 * 119.99676 * 359.97438 * 14 13 12 16 16 C 1.50696 * 120.00330 * 179.97438 * 14 13 12 17 17 C 1.53781 * 113.61615 * 179.97438 * 16 14 13 18 18 C 1.53786 * 87.17350 * 219.89494 * 17 16 14 19 19 C 1.53781 * 113.69134 * 82.46277 * 16 14 13 20 20 H 0.97002 * 119.99913 * 0.02562 * 1 2 3 21 21 H 0.97001 * 120.00286 * 359.97438 * 9 7 2 22 22 H 1.09009 * 109.46531 * 60.00076 * 12 10 9 23 23 H 1.08993 * 109.47204 * 300.00323 * 12 10 9 24 24 H 1.08999 * 112.84914 * 311.19807 * 16 14 13 25 25 H 1.09002 * 113.61445 * 334.48493 * 17 16 14 26 26 H 1.09002 * 113.61408 * 105.30224 * 17 16 14 27 27 H 1.08992 * 113.61675 * 140.02412 * 18 17 16 28 28 H 1.09000 * 113.60973 * 270.92699 * 18 17 16 29 29 H 1.09005 * 113.61471 * 254.54463 * 19 16 14 30 30 H 1.08996 * 113.61178 * 25.35805 * 19 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 2.4958 2.0463 -1.4001 5 1 1.4457 2.6527 0.7000 6 1 3.5457 1.4402 0.7001 7 6 2.0089 -1.2034 0.0005 8 1 3.0888 -1.2034 0.0010 9 7 1.3233 -2.3907 0.0005 10 6 1.9972 -3.5579 0.0016 11 8 3.2102 -3.5579 0.0021 12 6 1.2437 -4.8630 0.0022 13 8 2.1872 -5.9667 0.0039 14 6 1.6742 -7.2070 0.0041 15 8 0.4763 -7.3653 0.0033 16 6 2.5921 -8.4021 0.0052 17 6 1.8499 -9.7490 0.0059 18 6 2.9182 -10.2506 0.9918 19 6 3.1140 -8.7790 1.4018 20 1 -0.4850 0.8401 -0.0004 21 1 0.3533 -2.3907 0.0005 22 1 0.6174 -4.9213 -0.8881 23 1 0.6167 -4.9201 0.8919 24 1 3.3751 -8.3351 -0.7500 25 1 0.8496 -9.6961 0.4357 26 1 1.8703 -10.2593 -0.9571 27 1 2.5175 -10.8775 1.7883 28 1 3.7900 -10.6883 0.5054 29 1 4.1565 -8.5067 1.5665 30 1 2.4599 -8.4598 2.2131 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000731238308.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:31 Heat of formation + Delta-G solvation = -129.569629 kcal Electronic energy + Delta-G solvation = -15180.849764 eV Core-core repulsion = 12361.995808 eV Total energy + Delta-G solvation = -2818.853957 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.88016 -40.21401 -38.99403 -37.33391 -36.05535 -33.44307 -30.43752 -28.00420 -26.60651 -26.38847 -22.67711 -21.46138 -20.34956 -20.09310 -19.04934 -17.96499 -17.71428 -17.37291 -16.55771 -16.28734 -15.83756 -15.61547 -14.95461 -14.21370 -14.02824 -13.58227 -13.49082 -13.39084 -13.06233 -12.94230 -12.49580 -12.29448 -12.12422 -11.89410 -11.59737 -11.50637 -11.37787 -11.30749 -10.53729 -10.14235 -8.54187 -6.05311 1.06668 1.34956 1.38004 1.46381 1.58215 1.84297 2.29256 3.03006 3.11133 3.43454 3.57786 3.70096 3.86994 3.96094 4.11415 4.17340 4.19193 4.66231 4.75232 4.83276 5.02167 5.09341 5.10336 5.32638 5.35821 5.48458 5.86820 6.43415 6.63934 7.00564 7.37004 7.90478 8.62931 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.076212 B = 0.004702 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 367.306711 B = 5953.844314 C = 6208.843494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.008 4.008 3 Si 1.000 3.000 4 H -0.269 1.269 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.340 4.340 8 H 0.085 0.915 9 N -0.557 5.557 10 C 0.436 3.564 11 O -0.618 6.618 12 C 0.069 3.931 13 O -0.344 6.344 14 C 0.463 3.537 15 O -0.536 6.536 16 C -0.118 4.118 17 C -0.119 4.119 18 C -0.122 4.122 19 C -0.127 4.127 20 H 0.281 0.719 21 H 0.400 0.600 22 H 0.104 0.896 23 H 0.103 0.897 24 H 0.142 0.858 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.087 0.913 28 H 0.107 0.893 29 H 0.090 0.910 30 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.171 -16.071 0.978 16.246 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.209 4.209 3 Si 0.822 3.178 4 H -0.194 1.194 5 H -0.193 1.193 6 H -0.195 1.195 7 C -0.469 4.469 8 H 0.103 0.897 9 N -0.194 5.194 10 C 0.222 3.778 11 O -0.505 6.505 12 C -0.008 4.008 13 O -0.260 6.260 14 C 0.308 3.692 15 O -0.426 6.426 16 C -0.137 4.137 17 C -0.156 4.156 18 C -0.159 4.159 19 C -0.164 4.164 20 H 0.091 0.909 21 H 0.234 0.766 22 H 0.122 0.878 23 H 0.121 0.879 24 H 0.159 0.841 25 H 0.099 0.901 26 H 0.110 0.890 27 H 0.105 0.895 28 H 0.125 0.875 29 H 0.108 0.892 30 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 2.457 -15.925 0.984 16.144 hybrid contribution -0.580 1.193 -0.081 1.329 sum 1.877 -14.732 0.903 14.879 Atomic orbital electron populations 1.69675 1.07014 1.29804 1.49059 1.26152 0.96587 1.02640 0.95512 0.84834 0.77893 0.76195 0.78847 1.19383 1.19343 1.19487 1.19747 0.92982 0.83380 1.50825 0.89734 1.41751 1.09547 1.04208 1.63941 1.20104 0.88083 0.85388 0.84195 1.90520 1.15442 1.87708 1.56829 1.22503 0.90343 0.82884 1.05083 1.86590 1.40805 1.15257 1.83303 1.24650 0.89165 0.84482 0.70896 1.90611 1.18038 1.86838 1.47106 1.22952 0.98845 0.88337 1.03520 1.22951 0.98971 0.91694 1.02022 1.22847 0.99267 0.94746 0.99086 1.22970 1.02590 0.97720 0.93163 0.90902 0.76580 0.87800 0.87872 0.84056 0.90130 0.88964 0.89456 0.87474 0.89161 0.90558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.97 13.05 21.66 0.28 -48.69 16 2 C -0.01 -0.43 5.50 84.93 0.47 0.04 16 3 Si 1.00 42.17 29.55 68.60 2.03 44.20 16 4 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 5 H -0.27 -10.69 7.11 99.48 0.71 -9.99 16 6 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 7 C -0.34 -19.34 9.68 84.04 0.81 -18.52 16 8 H 0.08 5.08 7.16 -2.91 -0.02 5.06 16 9 N -0.56 -29.14 5.29 -306.98 -1.62 -30.76 16 10 C 0.44 21.87 7.86 87.66 0.69 22.55 16 11 O -0.62 -35.94 16.08 15.71 0.25 -35.69 16 12 C 0.07 2.72 5.94 71.24 0.42 3.15 16 13 O -0.34 -13.28 9.75 -44.99 -0.44 -13.72 16 14 C 0.46 14.81 7.49 71.23 0.53 15.34 16 15 O -0.54 -18.99 15.65 21.95 0.34 -18.65 16 16 C -0.12 -2.59 4.26 -11.01 -0.05 -2.63 16 17 C -0.12 -2.06 7.40 31.12 0.23 -1.83 16 18 C -0.12 -1.57 8.10 31.20 0.25 -1.31 16 19 C -0.13 -2.33 7.64 31.20 0.24 -2.09 16 20 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 21 H 0.40 19.70 7.90 -92.71 -0.73 18.97 16 22 H 0.10 3.70 8.14 -2.38 -0.02 3.68 16 23 H 0.10 3.67 8.13 -2.39 -0.02 3.65 16 24 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 25 H 0.08 1.67 7.44 -2.39 -0.02 1.65 16 26 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 27 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.52 8.14 -2.38 -0.02 1.50 16 30 H 0.08 1.56 8.09 -2.39 -0.02 1.54 16 Total: -1.00 -69.42 270.44 4.87 -64.55 By element: Atomic # 1 Polarization: 23.64 SS G_CDS: 0.42 Total: 24.07 kcal Atomic # 6 Polarization: 11.08 SS G_CDS: 3.60 Total: 14.68 kcal Atomic # 7 Polarization: -78.11 SS G_CDS: -1.34 Total: -79.45 kcal Atomic # 8 Polarization: -68.21 SS G_CDS: 0.16 Total: -68.05 kcal Atomic # 14 Polarization: 42.17 SS G_CDS: 2.03 Total: 44.20 kcal Total: -69.42 4.87 -64.55 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000731238308.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.022 kcal (2) G-P(sol) polarization free energy of solvation -69.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.547 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds