Wall clock time and date at job start Sun Mar 29 2020 22:15:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46496 * 119.99884 * 2 1 4 4 C 1.50703 * 109.46871 * 269.99501 * 3 2 1 5 5 O 1.21211 * 120.00269 * 0.02562 * 4 3 2 6 6 O 1.34313 * 119.99697 * 180.02562 * 4 3 2 7 7 C 1.34926 * 116.99913 * 180.02562 * 6 4 3 8 8 H 1.07999 * 119.99329 * 359.97438 * 7 6 4 9 9 C 1.38749 * 119.99956 * 179.97438 * 7 6 4 10 10 N 1.31438 * 120.00060 * 359.97438 * 9 7 6 11 11 Si 1.86807 * 119.99738 * 179.97438 * 9 7 6 12 12 H 1.48503 * 109.47062 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.47013 * 120.00126 * 11 9 7 14 14 H 1.48504 * 109.46984 * 239.99793 * 11 9 7 15 15 C 1.34777 * 119.99858 * 179.97438 * 2 1 3 16 16 O 1.21279 * 120.00166 * 180.02562 * 15 2 1 17 17 C 1.50706 * 119.99762 * 0.02562 * 15 2 1 18 18 C 1.53001 * 117.49756 * 248.61806 * 17 15 2 19 19 C 1.52999 * 59.99986 * 252.51526 * 18 17 15 20 20 H 1.08999 * 109.47441 * 270.00307 * 1 2 3 21 21 H 1.09005 * 109.47121 * 30.00515 * 1 2 3 22 22 H 1.08997 * 109.47160 * 150.00168 * 1 2 3 23 23 H 1.09000 * 109.47710 * 29.99936 * 3 2 1 24 24 H 1.09000 * 109.46883 * 149.99979 * 3 2 1 25 25 H 0.96999 * 119.99968 * 180.02562 * 10 9 7 26 26 H 1.08996 * 115.55128 * 34.33271 * 17 15 2 27 27 H 1.09004 * 117.49834 * 0.02562 * 18 17 15 28 28 H 1.08997 * 117.49999 * 145.02096 * 18 17 15 29 29 H 1.09004 * 117.50109 * 252.51157 * 19 18 17 30 30 H 1.08998 * 117.52032 * 107.48340 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7036 -1.4209 5 8 2.0546 1.0217 -2.3422 6 8 3.1094 2.8470 -1.6663 7 6 3.3003 3.1785 -2.9602 8 1 2.9281 2.5344 -3.7431 9 6 3.9748 4.3468 -3.2848 10 7 4.4273 5.1308 -2.3318 11 14 4.2396 4.8054 -5.0762 12 1 3.6380 3.7644 -5.9478 13 1 3.5953 6.1145 -5.3525 14 1 5.6956 4.9022 -5.3523 15 6 2.1389 -1.1672 0.0005 16 8 3.3517 -1.1673 0.0010 17 6 1.3853 -2.4723 0.0005 18 6 1.4600 -3.3312 1.2645 19 6 2.2074 -3.7627 0.0011 20 1 -0.3634 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8900 -0.5138 23 1 1.6085 2.0284 0.5138 24 1 3.1499 1.1383 0.5138 25 1 4.8985 5.9477 -2.5587 26 1 0.4472 -2.4735 -0.5545 27 1 2.0539 -2.9521 2.0962 28 1 0.5709 -3.8975 1.5415 29 1 1.8099 -4.6129 -0.5532 30 1 3.2932 -3.6677 0.0011 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000733512816.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:15:20 Heat of formation + Delta-G solvation = -80.252379 kcal Electronic energy + Delta-G solvation = -15619.643798 eV Core-core repulsion = 12802.928398 eV Total energy + Delta-G solvation = -2816.715400 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.04548 -38.72382 -36.35752 -35.44905 -34.62256 -32.11004 -29.09216 -26.48442 -25.31685 -23.52313 -22.48463 -20.33001 -18.69684 -17.70643 -17.41257 -16.75211 -15.92845 -15.25909 -14.79351 -14.50068 -14.30303 -14.07897 -13.58423 -12.86398 -12.59861 -12.22277 -12.19964 -11.79487 -11.61244 -11.55429 -11.10046 -10.63643 -10.51744 -10.38501 -10.33174 -9.79997 -9.62021 -9.27556 -8.54672 -8.38827 -6.37449 -4.05163 2.62788 3.07421 3.12410 3.22137 3.29969 3.55653 3.82580 4.03199 4.53344 4.69642 4.72655 4.84432 5.02857 5.14740 5.28242 5.46610 5.48689 5.59717 5.70614 5.79722 5.88614 5.94902 6.08678 6.41291 6.84981 7.42962 7.53605 7.99172 8.38152 8.75335 9.11397 9.88417 10.80635 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.052442 B = 0.005838 C = 0.005714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 533.799466 B = 4794.610049 C = 4899.139775 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.594 5.594 3 C 0.132 3.868 4 C 0.383 3.617 5 O -0.550 6.550 6 O -0.216 6.216 7 C -0.380 4.380 8 H 0.095 0.905 9 C 0.041 3.959 10 N -0.866 5.866 11 Si 0.943 3.057 12 H -0.266 1.266 13 H -0.276 1.276 14 H -0.276 1.276 15 C 0.547 3.453 16 O -0.536 6.536 17 C -0.189 4.189 18 C -0.153 4.153 19 C -0.150 4.150 20 H 0.057 0.943 21 H 0.073 0.927 22 H 0.072 0.928 23 H 0.108 0.892 24 H 0.113 0.887 25 H 0.269 0.731 26 H 0.125 0.875 27 H 0.098 0.902 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.651 -11.343 7.148 15.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.327 5.327 3 C 0.008 3.992 4 C 0.227 3.773 5 O -0.446 6.446 6 O -0.122 6.122 7 C -0.456 4.456 8 H 0.112 0.888 9 C -0.162 4.162 10 N -0.503 5.503 11 Si 0.767 3.233 12 H -0.190 1.190 13 H -0.202 1.202 14 H -0.201 1.201 15 C 0.336 3.664 16 O -0.412 6.412 17 C -0.210 4.210 18 C -0.191 4.191 19 C -0.187 4.187 20 H 0.076 0.924 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.126 0.874 24 H 0.131 0.869 25 H 0.078 0.922 26 H 0.143 0.857 27 H 0.117 0.883 28 H 0.121 0.879 29 H 0.120 0.880 30 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -7.983 -11.279 6.923 15.455 hybrid contribution -0.034 0.414 -1.016 1.098 sum -8.017 -10.865 5.906 14.738 Atomic orbital electron populations 1.21799 0.79051 1.03717 1.01286 1.47312 1.07116 1.05094 1.73165 1.20691 0.99821 0.85349 0.93380 1.23638 0.79972 0.81957 0.91702 1.90544 1.52332 1.55286 1.46462 1.83869 1.62131 1.35233 1.30988 1.21249 1.37257 1.06989 0.80106 0.88786 1.25325 0.95784 0.94958 1.00157 1.69999 1.35432 1.12577 1.32324 0.85621 0.78373 0.78641 0.80639 1.19026 1.20182 1.20143 1.19602 0.87280 0.84293 0.75263 1.90699 1.13912 1.87119 1.49516 1.22206 1.02754 0.90780 1.05294 1.22913 1.03070 1.01626 0.91448 1.22949 1.00239 0.95420 1.00077 0.92431 0.90815 0.90959 0.87391 0.86931 0.92160 0.85693 0.88319 0.87943 0.88023 0.87414 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.02 10.27 59.85 0.61 1.64 16 2 N -0.59 -10.02 2.36 -182.95 -0.43 -10.45 16 3 C 0.13 2.53 6.00 -5.19 -0.03 2.50 16 4 C 0.38 9.84 7.97 36.01 0.29 10.13 16 5 O -0.55 -15.40 15.67 -19.05 -0.30 -15.70 16 6 O -0.22 -6.38 9.75 -20.72 -0.20 -6.58 16 7 C -0.38 -11.62 9.65 30.92 0.30 -11.32 16 8 H 0.09 2.92 6.86 -52.49 -0.36 2.56 16 9 C 0.04 1.20 5.49 -17.53 -0.10 1.10 16 10 N -0.87 -25.94 13.67 55.48 0.76 -25.18 16 11 Si 0.94 21.88 29.55 -169.99 -5.02 16.86 16 12 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 13 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 14 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 15 C 0.55 9.71 7.46 -10.98 -0.08 9.63 16 16 O -0.54 -11.71 15.84 5.56 0.09 -11.62 16 17 C -0.19 -2.42 5.29 -91.77 -0.49 -2.90 16 18 C -0.15 -1.51 10.23 -26.73 -0.27 -1.78 16 19 C -0.15 -1.71 10.04 -26.73 -0.27 -1.98 16 20 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 21 H 0.07 0.93 8.07 -51.93 -0.42 0.52 16 22 H 0.07 0.76 6.00 -51.93 -0.31 0.45 16 23 H 0.11 1.68 8.07 -51.93 -0.42 1.26 16 24 H 0.11 2.18 7.42 -51.93 -0.39 1.80 16 25 H 0.27 7.33 8.31 -40.82 -0.34 7.00 16 26 H 0.13 1.35 6.44 -51.93 -0.33 1.01 16 27 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 1.44 7.67 -51.93 -0.40 1.04 16 LS Contribution 271.95 15.07 4.10 4.10 Total: -1.00 -37.18 271.95 -4.50 -41.69 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.45 Total: -0.12 kcal Atomic # 6 Polarization: 7.05 SS G_CDS: -0.04 Total: 7.02 kcal Atomic # 7 Polarization: -35.96 SS G_CDS: 0.33 Total: -35.63 kcal Atomic # 8 Polarization: -33.49 SS G_CDS: -0.41 Total: -33.91 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -37.18 -4.50 -41.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000733512816.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.567 kcal (2) G-P(sol) polarization free energy of solvation -37.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds