Wall clock time and date at job start Sun Mar 29 2020 22:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99596 * 2 1 4 4 H 1.48498 * 109.47484 * 270.00021 * 3 2 1 5 5 H 1.48497 * 109.47191 * 30.00319 * 3 2 1 6 6 H 1.48501 * 109.46713 * 150.00116 * 3 2 1 7 7 C 1.37876 * 120.00412 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99448 * 0.02562 * 7 2 1 9 9 C 1.50693 * 120.00303 * 179.97438 * 7 2 1 10 10 N 1.46894 * 109.47397 * 184.89831 * 9 7 2 11 11 C 1.46899 * 111.00404 * 160.36390 * 10 9 7 12 12 C 1.52993 * 109.47086 * 288.04842 * 11 10 9 13 13 F 1.39906 * 109.47314 * 179.48816 * 12 11 10 14 14 C 1.46906 * 111.00221 * 284.32253 * 10 9 7 15 15 C 1.50692 * 109.47282 * 169.99915 * 14 10 9 16 16 C 1.34519 * 125.79131 * 90.00081 * 15 14 10 17 17 C 1.41387 * 106.84122 * 180.02562 * 16 15 14 18 18 C 1.34519 * 106.83908 * 359.97438 * 17 16 15 19 19 O 1.34297 * 108.41983 * 359.73987 * 18 17 16 20 20 H 0.96996 * 120.00016 * 359.97438 * 1 2 3 21 21 H 1.09006 * 109.47095 * 64.89709 * 9 7 2 22 22 H 1.08998 * 109.47091 * 304.90168 * 9 7 2 23 23 H 1.09004 * 109.46712 * 48.04706 * 11 10 9 24 24 H 1.08999 * 109.47182 * 168.04547 * 11 10 9 25 25 H 1.09008 * 109.47062 * 299.48827 * 12 11 10 26 26 H 1.09003 * 109.47508 * 59.48813 * 12 11 10 27 27 H 1.08996 * 109.47128 * 49.99422 * 14 10 9 28 28 H 1.08998 * 109.46575 * 289.99905 * 14 10 9 29 29 H 1.07998 * 126.58093 * 0.02676 * 16 15 14 30 30 H 1.07994 * 126.58081 * 179.97438 * 17 16 15 31 31 H 1.07996 * 125.78412 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0466 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7000 7 6 2.0046 -1.1940 -0.0005 8 1 1.4646 -2.1293 -0.0014 9 6 3.5116 -1.1940 -0.0011 10 7 4.0013 -2.5738 -0.1199 11 6 5.3944 -2.5999 -0.5852 12 6 5.4461 -2.2048 -2.0623 13 9 6.7740 -2.2183 -2.5025 14 6 3.8574 -3.2948 1.1520 15 6 4.1350 -4.7597 0.9331 16 6 5.3365 -5.3563 1.0337 17 6 5.1384 -6.7269 0.7485 18 6 3.8276 -6.8859 0.4913 19 8 3.2239 -5.6922 0.6106 20 1 -0.4850 0.8400 0.0004 21 1 3.8753 -0.7582 0.9295 22 1 3.8745 -0.6058 -0.8439 23 1 5.9861 -1.8960 0.0001 24 1 5.7994 -3.6044 -0.4633 25 1 4.8617 -2.9139 -2.6488 26 1 5.0327 -1.2038 -2.1855 27 1 2.8420 -3.1696 1.5278 28 1 4.5654 -2.8953 1.8781 29 1 6.2727 -4.8799 1.2842 30 1 5.8943 -7.4981 0.7390 31 1 3.3423 -7.8166 0.2370 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000759345489.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:36 Heat of formation + Delta-G solvation = -49.933941 kcal Electronic energy + Delta-G solvation = -15683.607756 eV Core-core repulsion = 12880.579852 eV Total energy + Delta-G solvation = -2803.027904 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.60241 -43.43021 -38.78862 -34.77206 -33.84615 -32.12644 -31.13264 -28.75479 -25.92529 -24.26372 -22.58824 -21.99855 -21.18778 -19.07190 -18.25850 -17.48404 -17.05421 -16.87125 -16.38851 -16.30254 -15.71109 -15.14775 -14.76582 -14.61984 -14.31140 -13.81752 -13.61558 -13.58659 -13.35612 -12.79106 -12.51490 -12.22626 -12.10208 -11.87403 -11.55986 -11.46191 -10.76776 -10.75863 -9.42865 -9.15063 -8.27340 -6.31518 0.83645 1.36924 1.37894 1.48054 1.74453 2.20697 2.34734 2.98711 3.08518 3.72729 3.85949 3.94256 4.09070 4.18780 4.21233 4.35047 4.47867 4.55026 4.68380 4.81350 4.91243 4.98967 5.02670 5.05960 5.26120 5.51481 5.69161 5.90359 6.13720 6.33681 6.55435 6.75614 7.31674 8.89528 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.023901 B = 0.008578 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.224465 B = 3263.568615 C = 4123.926229 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.010 3.990 3 Si 0.944 3.056 4 H -0.264 1.264 5 H -0.284 1.284 6 H -0.246 1.246 7 C -0.517 4.517 8 H 0.035 0.965 9 C 0.170 3.830 10 N -0.538 5.538 11 C 0.020 3.980 12 C 0.067 3.933 13 F -0.224 7.224 14 C 0.139 3.861 15 C -0.015 4.015 16 C -0.211 4.211 17 C -0.219 4.219 18 C -0.050 4.050 19 O -0.198 6.198 20 H 0.267 0.733 21 H 0.001 0.999 22 H 0.039 0.961 23 H 0.049 0.951 24 H 0.094 0.906 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.161 0.839 30 H 0.175 0.825 31 H 0.234 0.766 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.142 -8.924 0.976 15.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.188 4.188 3 Si 0.767 3.233 4 H -0.189 1.189 5 H -0.209 1.209 6 H -0.170 1.170 7 C -0.555 4.555 8 H 0.053 0.947 9 C 0.043 3.957 10 N -0.263 5.263 11 C -0.109 4.109 12 C 0.012 3.988 13 F -0.205 7.205 14 C 0.012 3.988 15 C -0.066 4.066 16 C -0.231 4.231 17 C -0.238 4.238 18 C -0.117 4.117 19 O -0.094 6.094 20 H 0.076 0.924 21 H 0.018 0.982 22 H 0.057 0.943 23 H 0.068 0.932 24 H 0.113 0.887 25 H 0.101 0.899 26 H 0.094 0.906 27 H 0.091 0.909 28 H 0.097 0.903 29 H 0.179 0.821 30 H 0.193 0.807 31 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges 12.427 -8.978 0.582 15.342 hybrid contribution 0.290 1.055 0.534 1.217 sum 12.717 -7.923 1.116 15.025 Atomic orbital electron populations 1.70054 1.08262 1.28138 1.52400 1.25836 0.95540 1.03089 0.94320 0.85765 0.79524 0.78621 0.79369 1.18933 1.20941 1.16963 1.21218 0.91036 0.93165 1.50073 0.94694 1.20066 0.94352 0.85413 0.95848 1.61608 1.18736 1.16703 1.29248 1.22705 0.89741 1.03116 0.95327 1.21908 0.77634 1.03856 0.95393 1.92712 1.38755 1.98249 1.90833 1.20325 1.02803 0.84778 0.90905 1.22445 0.88163 0.91163 1.04804 1.21852 0.97820 0.95142 1.08316 1.22130 0.97202 0.97022 1.07419 1.24841 0.93694 0.88072 1.05095 1.84071 1.39259 1.17817 1.68256 0.92421 0.98166 0.94261 0.93238 0.88744 0.89929 0.90647 0.90884 0.90324 0.82107 0.80745 0.74994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.71 13.96 21.45 0.30 -58.41 16 2 C 0.01 0.55 5.47 84.65 0.46 1.01 16 3 Si 0.94 42.48 27.37 68.60 1.88 44.36 16 4 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 5 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 6 H -0.25 -10.13 6.69 99.48 0.67 -9.47 16 7 C -0.52 -29.14 9.17 25.60 0.23 -28.91 16 8 H 0.03 2.24 7.90 -2.91 -0.02 2.22 16 9 C 0.17 7.66 3.65 85.56 0.31 7.97 16 10 N -0.54 -21.33 4.37 -905.41 -3.96 -25.29 16 11 C 0.02 0.62 5.28 86.30 0.46 1.08 16 12 C 0.07 2.10 7.62 71.98 0.55 2.65 16 13 F -0.22 -6.89 17.36 44.97 0.78 -6.11 16 14 C 0.14 5.12 5.32 85.55 0.46 5.58 16 15 C -0.02 -0.51 6.28 24.83 0.16 -0.36 16 16 C -0.21 -5.70 9.12 22.19 0.20 -5.50 16 17 C -0.22 -5.06 10.91 22.19 0.24 -4.81 16 18 C -0.05 -1.24 12.09 66.97 0.81 -0.43 16 19 O -0.20 -6.87 10.65 -2.45 -0.03 -6.89 16 20 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 21 H 0.00 0.03 7.40 -2.38 -0.02 0.01 16 22 H 0.04 1.70 5.40 -2.39 -0.01 1.69 16 23 H 0.05 1.47 8.05 -2.39 -0.02 1.45 16 24 H 0.09 2.78 5.50 -2.39 -0.01 2.77 16 25 H 0.08 2.56 8.14 -2.38 -0.02 2.54 16 26 H 0.08 2.40 6.52 -2.39 -0.02 2.39 16 27 H 0.07 3.14 7.32 -2.39 -0.02 3.12 16 28 H 0.08 2.50 8.12 -2.39 -0.02 2.48 16 29 H 0.16 3.62 7.95 -2.91 -0.02 3.60 16 30 H 0.18 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.23 3.62 8.06 -2.91 -0.02 3.59 16 Total: -1.00 -66.82 266.24 3.93 -62.89 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: 1.08 Total: 11.17 kcal Atomic # 6 Polarization: -25.60 SS G_CDS: 3.88 Total: -21.72 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -3.66 Total: -83.69 kcal Atomic # 8 Polarization: -6.87 SS G_CDS: -0.03 Total: -6.89 kcal Atomic # 9 Polarization: -6.89 SS G_CDS: 0.78 Total: -6.11 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 1.88 Total: 44.36 kcal Total: -66.82 3.93 -62.89 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000759345489.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.952 kcal (2) G-P(sol) polarization free energy of solvation -66.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds