Wall clock time and date at job start Sun Mar 29 2020 21:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.20823 * 119.99976 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99762 * 180.02562 * 11 10 9 14 14 C 1.45195 * 116.99712 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.43665 * 31.09196 * 14 13 11 16 16 C 1.54631 * 110.48611 * 153.76998 * 14 13 11 17 17 C 1.54483 * 101.76235 * 143.47750 * 16 14 13 18 18 N 1.46762 * 105.47517 * 334.58408 * 17 16 14 19 19 C 1.34415 * 111.29733 * 17.01711 * 18 17 16 20 20 O 1.21284 * 124.94029 * 179.62698 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.09005 * 110.96833 * 261.59491 * 16 14 13 27 27 H 1.08997 * 110.96796 * 25.36085 * 16 14 13 28 28 H 1.08999 * 110.24243 * 215.58472 * 17 16 14 29 29 H 1.09001 * 110.32074 * 93.62937 * 17 16 14 30 30 H 0.96997 * 124.35216 * 196.99441 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4920 -4.9671 0.0170 12 8 0.2838 -4.9671 0.0171 13 8 2.1633 -6.1295 0.0227 14 6 1.3725 -7.3472 0.0282 15 1 0.4318 -7.1926 -0.5003 16 6 2.1677 -8.5118 -0.6063 17 6 1.7230 -9.7079 0.2643 18 7 1.3227 -9.1279 1.5517 19 6 1.1139 -7.8042 1.4469 20 8 0.7690 -7.0812 2.3576 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 1.8802 -8.6588 -1.6474 27 1 3.2412 -8.3440 -0.5194 28 1 2.5522 -10.4013 0.4045 29 1 0.8786 -10.2193 -0.1979 30 1 1.2215 -9.6347 2.3725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812614996.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:34 Heat of formation + Delta-G solvation = -128.674964 kcal Electronic energy + Delta-G solvation = -15413.291281 eV Core-core repulsion = 12594.476120 eV Total energy + Delta-G solvation = -2818.815161 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.84260 -39.26944 -36.59142 -35.87328 -33.54167 -31.32553 -30.71011 -27.61530 -25.84090 -22.55912 -22.27461 -20.62414 -19.75663 -17.66271 -17.55449 -16.67561 -16.29555 -15.48879 -15.34477 -14.57150 -14.39643 -13.93553 -13.83865 -13.04034 -12.67840 -12.65677 -12.40776 -12.16129 -11.32761 -11.21827 -11.12804 -10.90053 -10.63012 -10.00687 -9.91108 -9.64671 -9.52157 -9.37029 -9.14906 -8.33241 -5.97019 -4.02058 2.26138 2.81144 2.98838 3.30960 3.36083 3.40591 3.43033 4.10891 4.15628 4.47102 4.62815 4.65766 5.04356 5.13539 5.38157 5.44864 5.47279 5.73530 6.15823 6.22561 6.53372 6.63280 6.74067 6.93657 7.70599 7.79054 8.02774 8.05997 8.27809 8.43349 9.04766 9.61647 11.14037 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.067387 B = 0.004986 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.408857 B = 5613.870098 C = 5737.559297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.059 3.941 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.033 3.967 10 C -0.100 4.100 11 C 0.457 3.543 12 O -0.494 6.494 13 O -0.344 6.344 14 C 0.051 3.949 15 H 0.120 0.880 16 C -0.127 4.127 17 C 0.104 3.896 18 N -0.733 5.733 19 C 0.506 3.494 20 O -0.505 6.505 21 H 0.262 0.738 22 H 0.027 0.973 23 H 0.026 0.974 24 H 0.093 0.907 25 H 0.093 0.907 26 H 0.101 0.899 27 H 0.099 0.901 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.766 -20.402 -2.157 21.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.143 4.143 3 Si 0.724 3.276 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.567 4.567 8 H 0.077 0.923 9 C -0.005 4.005 10 C -0.138 4.138 11 C 0.300 3.700 12 O -0.379 6.379 13 O -0.261 6.261 14 C -0.008 4.008 15 H 0.137 0.863 16 C -0.165 4.165 17 C -0.021 4.021 18 N -0.392 5.392 19 C 0.290 3.710 20 O -0.378 6.378 21 H 0.072 0.928 22 H 0.046 0.954 23 H 0.044 0.956 24 H 0.111 0.889 25 H 0.111 0.889 26 H 0.119 0.881 27 H 0.118 0.882 28 H 0.104 0.896 29 H 0.095 0.905 30 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges 5.037 -19.814 -1.781 20.522 hybrid contribution 0.216 0.496 0.358 0.648 sum 5.253 -19.318 -1.423 20.070 Atomic orbital electron populations 1.69986 1.06101 1.26844 1.49853 1.25015 0.94845 0.99297 0.95127 0.86598 0.79498 0.82909 0.78612 1.20171 1.21267 1.20173 1.21113 0.93024 0.90634 1.51911 0.92346 1.19032 0.93243 0.89188 0.98993 1.21776 1.00688 0.87293 1.04006 1.24883 0.88199 0.85503 0.71432 1.90637 1.15756 1.87098 1.44362 1.86709 1.40565 1.13996 1.84864 1.23184 0.98038 0.84662 0.94929 0.86259 1.22755 1.02397 0.91173 1.00154 1.22075 1.00594 0.96002 0.83404 1.46060 1.71252 1.09299 1.12570 1.21082 0.76480 0.82577 0.90888 1.90824 1.44964 1.57816 1.44176 0.92802 0.95444 0.95561 0.88869 0.88873 0.88067 0.88225 0.89596 0.90548 0.74857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.58 13.29 55.43 0.74 -26.84 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.13 9.11 -34.44 -0.31 -15.44 16 8 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 9 C 0.03 0.89 4.26 -27.88 -0.12 0.77 16 10 C -0.10 -2.15 5.75 -27.88 -0.16 -2.31 16 11 C 0.46 9.60 7.95 36.01 0.29 9.89 16 12 O -0.49 -11.96 15.25 -18.75 -0.29 -12.25 16 13 O -0.34 -5.92 9.95 -42.17 -0.42 -6.34 16 14 C 0.05 0.71 3.22 -26.74 -0.09 0.62 16 15 H 0.12 1.71 7.26 -51.93 -0.38 1.33 16 16 C -0.13 -0.99 6.92 -25.10 -0.17 -1.16 16 17 C 0.10 0.61 7.78 -3.12 -0.02 0.59 16 18 N -0.73 -7.07 6.24 -59.20 -0.37 -7.44 16 19 C 0.51 7.73 8.12 -10.86 -0.09 7.64 16 20 O -0.50 -10.44 18.03 1.45 0.03 -10.42 16 21 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 22 H 0.03 0.82 8.10 -51.93 -0.42 0.40 16 23 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 24 H 0.09 1.77 8.14 -51.93 -0.42 1.35 16 25 H 0.09 1.88 8.14 -51.93 -0.42 1.46 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.10 0.74 8.11 -51.93 -0.42 0.32 16 28 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.41 3.20 8.96 -40.82 -0.37 2.83 16 LS Contribution 269.47 15.07 4.06 4.06 Total: -1.00 -36.93 269.47 -5.71 -42.64 By element: Atomic # 1 Polarization: 1.24 SS G_CDS: -3.66 Total: -2.42 kcal Atomic # 6 Polarization: 3.01 SS G_CDS: -0.78 Total: 2.23 kcal Atomic # 7 Polarization: -34.65 SS G_CDS: 0.37 Total: -34.28 kcal Atomic # 8 Polarization: -28.32 SS G_CDS: -0.68 Total: -29.00 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -36.93 -5.71 -42.64 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614996.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.039 kcal (2) G-P(sol) polarization free energy of solvation -36.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds