Wall clock time and date at job start Sun Mar 29 2020 21:56:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99772 * 2 1 4 4 H 1.48504 * 109.47266 * 240.00644 * 3 2 1 5 5 H 1.48504 * 109.46970 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47383 * 120.00051 * 3 2 1 7 7 C 1.37871 * 120.00482 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00483 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99694 * 359.71466 * 7 2 1 10 10 C 1.53004 * 109.47211 * 180.27574 * 9 7 2 11 11 C 1.50701 * 109.47211 * 179.97438 * 10 9 7 12 12 O 1.20823 * 119.99976 * 0.02562 * 11 10 9 13 13 O 1.34232 * 119.99762 * 180.02562 * 11 10 9 14 14 C 1.45195 * 116.99712 * 180.02562 * 13 11 10 15 15 H 1.09004 * 110.43665 * 31.09196 * 14 13 11 16 16 C 1.54631 * 110.48611 * 153.76998 * 14 13 11 17 17 C 1.54483 * 101.76235 * 143.47750 * 16 14 13 18 18 N 1.46762 * 105.47517 * 334.58408 * 17 16 14 19 19 C 1.34415 * 111.29733 * 17.01711 * 18 17 16 20 20 O 1.21284 * 124.94029 * 179.62698 * 19 18 17 21 21 H 0.96995 * 120.00207 * 359.97438 * 1 2 3 22 22 H 1.09000 * 109.47827 * 300.28170 * 9 7 2 23 23 H 1.09007 * 109.47098 * 60.28447 * 9 7 2 24 24 H 1.09000 * 109.47211 * 300.00973 * 10 9 7 25 25 H 1.09007 * 109.46376 * 60.00431 * 10 9 7 26 26 H 1.09005 * 110.96833 * 261.59491 * 16 14 13 27 27 H 1.08997 * 110.96796 * 25.36085 * 16 14 13 28 28 H 1.08999 * 110.24243 * 215.58472 * 17 16 14 29 29 H 1.09001 * 110.32074 * 93.62937 * 17 16 14 30 30 H 0.96997 * 124.35216 * 196.99441 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2126 5 1 1.2840 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 0.0054 10 6 2.2454 -3.6620 0.0104 11 6 1.4920 -4.9671 0.0170 12 8 0.2838 -4.9671 0.0171 13 8 2.1633 -6.1295 0.0227 14 6 1.3725 -7.3472 0.0282 15 1 0.4318 -7.1926 -0.5003 16 6 2.1677 -8.5118 -0.6063 17 6 1.7230 -9.7079 0.2643 18 7 1.3227 -9.1279 1.5517 19 6 1.1139 -7.8042 1.4469 20 8 0.7690 -7.0812 2.3576 21 1 -0.4850 0.8400 0.0004 22 1 0.6245 -2.5529 0.8956 23 1 0.6244 -2.5609 -0.8844 24 1 2.8721 -3.6081 -0.8798 25 1 2.8721 -3.6002 0.9002 26 1 1.8802 -8.6588 -1.6474 27 1 3.2412 -8.3440 -0.5194 28 1 2.5522 -10.4013 0.4045 29 1 0.8786 -10.2193 -0.1979 30 1 1.2215 -9.6347 2.3725 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812614996.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:34 Heat of formation + Delta-G solvation = -157.269020 kcal Electronic energy + Delta-G solvation = -15414.531212 eV Core-core repulsion = 12594.476120 eV Total energy + Delta-G solvation = -2820.055092 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -42.09946 -40.67031 -37.85032 -37.23604 -35.66684 -33.22227 -31.78282 -28.73315 -27.69705 -24.43416 -23.01202 -22.05896 -21.25426 -19.24493 -18.67323 -18.26119 -17.80977 -16.99900 -16.78914 -16.48185 -15.66168 -15.16181 -14.86947 -14.49350 -14.32879 -14.14313 -13.59483 -13.21689 -13.13694 -12.84194 -12.70770 -12.53512 -12.12835 -12.01236 -11.76912 -11.48432 -11.30086 -10.86990 -10.57407 -10.20343 -8.19834 -6.34591 1.02443 1.21076 1.43303 1.48319 1.55914 1.77719 2.29038 2.44103 3.13655 3.18851 3.37873 3.71628 3.91915 4.06444 4.32532 4.41985 4.46728 4.74218 4.84450 4.93041 5.04620 5.32622 5.45095 5.52542 5.67267 5.79253 5.85309 6.11651 6.72263 6.83844 7.04703 7.35821 8.92987 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.067387 B = 0.004986 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.408857 B = 5613.870098 C = 5737.559297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.937 5.937 2 C -0.005 4.005 3 Si 0.978 3.022 4 H -0.259 1.259 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.038 3.962 10 C -0.092 4.092 11 C 0.462 3.538 12 O -0.537 6.537 13 O -0.334 6.334 14 C 0.035 3.965 15 H 0.109 0.891 16 C -0.113 4.113 17 C 0.102 3.898 18 N -0.711 5.711 19 C 0.491 3.509 20 O -0.577 6.577 21 H 0.264 0.736 22 H -0.018 1.018 23 H -0.006 1.006 24 H 0.126 0.874 25 H 0.110 0.890 26 H 0.132 0.868 27 H 0.109 0.891 28 H 0.126 0.874 29 H 0.104 0.896 30 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.355 -22.017 -3.182 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.203 4.203 3 Si 0.801 3.199 4 H -0.183 1.183 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.583 4.583 8 H 0.098 0.902 9 C 0.001 3.999 10 C -0.129 4.129 11 C 0.307 3.693 12 O -0.426 6.426 13 O -0.250 6.250 14 C -0.024 4.024 15 H 0.127 0.873 16 C -0.151 4.151 17 C -0.021 4.021 18 N -0.368 5.368 19 C 0.275 3.725 20 O -0.456 6.456 21 H 0.073 0.927 22 H 0.000 1.000 23 H 0.012 0.988 24 H 0.144 0.856 25 H 0.128 0.872 26 H 0.150 0.850 27 H 0.128 0.872 28 H 0.144 0.856 29 H 0.122 0.878 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 7.684 -21.531 -2.834 23.036 hybrid contribution -0.610 0.805 0.658 1.205 sum 7.074 -20.726 -2.175 22.008 Atomic orbital electron populations 1.70167 1.08369 1.28058 1.51113 1.26145 0.95736 1.04018 0.94360 0.85315 0.78002 0.77022 0.79545 1.18328 1.21264 1.18894 1.21607 0.94155 0.91153 1.51427 0.90246 1.18802 0.93690 0.92113 0.95296 1.21536 0.99344 0.85745 1.06304 1.24660 0.87410 0.86705 0.70503 1.90623 1.17551 1.87924 1.46475 1.86638 1.40309 1.14107 1.83993 1.23746 0.98908 0.84720 0.95035 0.87293 1.22949 1.02057 0.88309 1.01753 1.22515 1.03135 0.95527 0.80904 1.46079 1.68546 1.07443 1.14686 1.21457 0.76162 0.84144 0.90706 1.90782 1.48605 1.59988 1.46208 0.92724 0.99955 0.98805 0.85634 0.87241 0.85018 0.87238 0.85631 0.87816 0.73630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -60.01 13.29 21.45 0.28 -59.73 16 2 C 0.00 -0.29 5.46 84.65 0.46 0.18 16 3 Si 0.98 44.65 29.54 68.60 2.03 46.68 16 4 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 5 H -0.29 -12.99 7.11 99.48 0.71 -12.28 16 6 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 7 C -0.55 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.08 4.15 7.74 -2.91 -0.02 4.12 16 9 C 0.04 2.18 4.26 29.85 0.13 2.31 16 10 C -0.09 -3.97 5.75 29.85 0.17 -3.80 16 11 C 0.46 19.94 7.95 71.24 0.57 20.50 16 12 O -0.54 -27.52 15.25 21.97 0.34 -27.18 16 13 O -0.33 -11.36 9.95 -48.65 -0.48 -11.84 16 14 C 0.03 0.93 3.22 30.59 0.10 1.03 16 15 H 0.11 3.16 7.26 -2.39 -0.02 3.14 16 16 C -0.11 -1.33 6.92 31.65 0.22 -1.11 16 17 C 0.10 0.73 7.78 86.83 0.68 1.40 16 18 N -0.71 -12.10 6.24 -459.81 -2.87 -14.97 16 19 C 0.49 14.97 8.12 87.90 0.71 15.68 16 20 O -0.58 -25.05 18.03 0.88 0.02 -25.03 16 21 H 0.26 15.83 8.31 -92.71 -0.77 15.06 16 22 H -0.02 -1.17 8.10 -2.39 -0.02 -1.19 16 23 H -0.01 -0.41 8.10 -2.38 -0.02 -0.42 16 24 H 0.13 4.58 8.14 -2.39 -0.02 4.56 16 25 H 0.11 4.37 8.14 -2.38 -0.02 4.35 16 26 H 0.13 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.11 1.15 8.11 -2.39 -0.02 1.13 16 28 H 0.13 0.09 8.14 -2.39 -0.02 0.07 16 29 H 0.10 0.33 8.14 -2.39 -0.02 0.31 16 30 H 0.42 5.65 8.96 -92.71 -0.83 4.82 16 Total: -1.00 -86.70 269.47 2.90 -83.80 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: 0.32 Total: 3.34 kcal Atomic # 6 Polarization: 1.68 SS G_CDS: 3.27 Total: 4.94 kcal Atomic # 7 Polarization: -72.11 SS G_CDS: -2.58 Total: -74.69 kcal Atomic # 8 Polarization: -63.92 SS G_CDS: -0.13 Total: -64.06 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -86.70 2.90 -83.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812614996.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.473 kcal (2) G-P(sol) polarization free energy of solvation -86.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.901 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.796 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds