Wall clock time and date at job start Sun Mar 29 2020 21:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47078 * 170.52270 * 3 2 1 5 5 C 1.36936 * 119.99654 * 263.90726 * 4 3 2 6 6 H 1.07998 * 119.99818 * 199.41704 * 5 4 3 7 7 C 1.38808 * 120.00237 * 19.42810 * 5 4 3 8 8 N 1.31623 * 120.00217 * 22.24869 * 7 5 4 9 9 Si 1.86800 * 120.00106 * 202.25399 * 7 5 4 10 10 H 1.48493 * 109.47126 * 59.99715 * 9 7 5 11 11 H 1.48497 * 109.47309 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47243 * 299.99739 * 9 7 5 13 13 C 1.46502 * 120.00209 * 83.91050 * 4 3 2 14 14 C 1.53005 * 109.46856 * 90.00002 * 13 4 3 15 15 H 1.08997 * 115.55204 * 330.58186 * 14 13 4 16 16 C 1.52998 * 117.49209 * 184.91559 * 14 13 4 17 17 H 1.08999 * 117.50744 * 0.02562 * 16 14 13 18 18 C 1.53005 * 117.49869 * 145.02445 * 16 14 13 19 19 C 1.52995 * 117.49605 * 116.25829 * 14 13 4 20 20 H 1.08999 * 117.49764 * 214.97767 * 19 14 13 21 21 Cl 1.80300 * 117.49989 * 359.97438 * 19 14 13 22 22 H 4.40637 * 5.51399 * 179.97438 * 4 1 2 23 23 H 1.09000 * 109.47698 * 50.51870 * 3 2 1 24 24 H 1.09002 * 109.46855 * 290.51807 * 3 2 1 25 25 H 0.97000 * 120.00147 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46759 * 209.99862 * 13 4 3 27 27 H 1.09003 * 109.46632 * 330.00015 * 13 4 3 28 28 H 1.09004 * 109.47031 * 59.99094 * 18 16 14 29 29 H 1.08991 * 109.47539 * 179.97438 * 18 16 14 30 30 H 1.08997 * 109.46759 * 299.99725 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3633 -0.2274 5 6 3.4804 1.7645 -1.4899 6 1 4.1188 2.6248 -1.6269 7 6 3.0111 1.0657 -2.5937 8 7 1.9268 0.3265 -2.4924 9 14 3.9185 1.1744 -4.2229 10 1 5.3080 0.6801 -4.0495 11 1 3.2202 0.3419 -5.2350 12 1 3.9491 2.5873 -4.6793 13 6 3.2506 2.2965 0.8958 14 6 4.6438 2.1756 1.5165 15 1 5.1118 1.1946 1.4338 16 6 4.9268 2.9890 2.7810 17 1 4.1203 3.6100 3.1711 18 6 5.8455 2.3636 3.8325 19 6 5.5564 3.4017 1.4482 20 1 6.6248 3.2274 1.3209 21 17 4.9079 4.8782 0.6419 22 1 -1.0502 -0.0004 -0.0001 23 1 3.0097 -0.6526 -0.7932 24 1 3.0094 -0.3594 0.9625 25 1 1.5987 -0.1615 -3.2638 26 1 3.0989 3.3152 0.5390 27 1 2.4966 2.0582 1.6461 28 1 6.8228 2.1680 3.3910 29 1 5.9571 3.0498 4.6719 30 1 5.4115 1.4274 4.1834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000897164573.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:39 Heat of formation + Delta-G solvation = 92.807241 kcal Electronic energy + Delta-G solvation = -13619.799622 eV Core-core repulsion = 11251.297815 eV Total energy + Delta-G solvation = -2368.501807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.077 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.04455 -35.64089 -34.96129 -31.49766 -31.13843 -28.61359 -26.24653 -25.64776 -22.01220 -20.53471 -19.81403 -17.39130 -16.38686 -15.29991 -14.80886 -14.40486 -13.56228 -13.47227 -13.20388 -12.84315 -12.49533 -12.01599 -11.58216 -11.49174 -11.12608 -11.09278 -10.93116 -10.73858 -10.32051 -10.04909 -9.96352 -9.42910 -9.23543 -8.87689 -8.67124 -8.39101 -6.92861 -5.72410 -3.14545 2.58039 3.42362 3.48327 3.49685 3.87161 4.21799 4.42275 4.58532 4.88813 4.93978 5.14938 5.36816 5.42424 5.71445 5.76666 5.84061 5.87353 6.05118 6.13497 6.24492 6.40282 6.52173 6.73167 6.96087 7.23279 7.45386 7.87030 8.35914 9.16823 9.24537 9.84047 10.30706 11.31235 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.009879 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.429282 B = 2833.541763 C = 3595.608734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.302 4.302 2 C -0.095 4.095 3 C 0.267 3.733 4 N -0.581 5.581 5 C -0.259 4.259 6 H 0.077 0.923 7 C 0.002 3.998 8 N -0.889 5.889 9 Si 0.897 3.103 10 H -0.284 1.284 11 H -0.292 1.292 12 H -0.284 1.284 13 C 0.165 3.835 14 C -0.133 4.133 15 H 0.112 0.888 16 C -0.155 4.155 17 H 0.109 0.891 18 C -0.119 4.119 19 C -0.074 4.074 20 H 0.127 0.873 21 Cl -0.147 7.147 22 H 0.189 0.811 23 H 0.092 0.908 24 H 0.036 0.964 25 H 0.253 0.747 26 H 0.068 0.932 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.957 2.646 9.977 11.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.321 4.321 2 C -0.098 4.098 3 C 0.142 3.858 4 N -0.300 5.300 5 C -0.388 4.388 6 H 0.094 0.906 7 C -0.197 4.197 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.211 1.211 11 H -0.218 1.218 12 H -0.210 1.210 13 C 0.038 3.962 14 C -0.154 4.154 15 H 0.130 0.870 16 C -0.175 4.175 17 H 0.127 0.873 18 C -0.177 4.177 19 C -0.117 4.117 20 H 0.145 0.855 21 Cl -0.120 7.120 22 H 0.207 0.793 23 H 0.110 0.890 24 H 0.054 0.946 25 H 0.064 0.936 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 5.845 2.672 9.742 11.671 hybrid contribution 0.105 0.201 -1.188 1.209 sum 5.950 2.874 8.554 10.809 Atomic orbital electron populations 1.24176 0.95339 1.04277 1.08308 1.24301 0.95329 0.96548 0.93652 1.17739 0.82890 0.87521 0.97646 1.44001 1.74494 1.07674 1.03836 1.19180 1.24143 1.13574 0.81879 0.90571 1.24924 0.96171 1.00959 0.97603 1.70128 1.19445 1.33896 1.29740 0.86452 0.79613 0.77533 0.83763 1.21111 1.21843 1.20991 1.20519 0.90148 0.95558 0.89964 1.23967 1.00436 0.94430 0.96590 0.87008 1.22896 1.01667 1.03500 0.89396 0.87255 1.21348 0.98384 1.00436 0.97491 1.25183 0.98135 0.89002 0.99382 0.85528 1.98675 1.88525 1.42483 1.82351 0.79330 0.89047 0.94607 0.93616 0.91383 0.93783 0.92599 0.92357 0.91768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -7.01 19.25 29.55 0.57 -6.44 16 2 C -0.10 -2.34 11.50 -37.13 -0.43 -2.77 16 3 C 0.27 6.29 5.41 -6.83 -0.04 6.25 16 4 N -0.58 -14.03 2.49 -176.57 -0.44 -14.47 16 5 C -0.26 -6.93 9.63 -15.06 -0.15 -7.08 16 6 H 0.08 2.05 7.92 -52.49 -0.42 1.63 16 7 C 0.00 0.06 4.82 -17.43 -0.08 -0.02 16 8 N -0.89 -25.47 9.61 55.49 0.53 -24.94 16 9 Si 0.90 21.80 29.61 -169.99 -5.03 16.77 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 12 H -0.28 -6.93 7.11 56.52 0.40 -6.52 16 13 C 0.17 3.35 5.87 -4.04 -0.02 3.33 16 14 C -0.13 -2.19 5.73 -90.62 -0.52 -2.71 16 15 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 16 C -0.16 -2.06 5.97 -90.58 -0.54 -2.60 16 17 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 18 C -0.12 -1.25 10.19 37.16 0.38 -0.87 16 19 C -0.07 -1.10 6.67 -26.70 -0.18 -1.28 16 20 H 0.13 1.70 8.05 -51.93 -0.42 1.29 16 21 Cl -0.15 -2.47 27.38 -51.86 -1.42 -3.89 16 22 H 0.19 3.69 7.80 -54.08 -0.42 3.26 16 23 H 0.09 2.34 6.59 -51.93 -0.34 1.99 16 24 H 0.04 0.73 8.12 -51.93 -0.42 0.31 16 25 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 26 H 0.07 1.45 5.96 -51.93 -0.31 1.15 16 27 H 0.04 0.87 8.07 -51.93 -0.42 0.45 16 28 H 0.05 0.55 7.90 -51.93 -0.41 0.14 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 276.72 15.07 4.17 4.17 Total: -1.00 -29.23 276.72 -7.18 -36.41 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -3.98 Total: 0.13 kcal Atomic # 6 Polarization: -13.17 SS G_CDS: -1.01 Total: -14.18 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.09 Total: -39.41 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.03 Total: 16.77 kcal Atomic # 17 Polarization: -2.47 SS G_CDS: -1.42 Total: -3.89 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.23 -7.18 -36.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164573.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.220 kcal (2) G-P(sol) polarization free energy of solvation -29.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.413 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds