Wall clock time and date at job start Sun Mar 29 2020 21:49:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 N 1.46501 * 109.47078 * 170.52270 * 3 2 1 5 5 C 1.36936 * 119.99654 * 263.90726 * 4 3 2 6 6 H 1.07998 * 119.99818 * 199.41704 * 5 4 3 7 7 C 1.38808 * 120.00237 * 19.42810 * 5 4 3 8 8 N 1.31623 * 120.00217 * 22.24869 * 7 5 4 9 9 Si 1.86800 * 120.00106 * 202.25399 * 7 5 4 10 10 H 1.48493 * 109.47126 * 59.99715 * 9 7 5 11 11 H 1.48497 * 109.47309 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47243 * 299.99739 * 9 7 5 13 13 C 1.46502 * 120.00209 * 83.91050 * 4 3 2 14 14 C 1.53005 * 109.46856 * 90.00002 * 13 4 3 15 15 H 1.08997 * 115.55204 * 330.58186 * 14 13 4 16 16 C 1.52998 * 117.49209 * 184.91559 * 14 13 4 17 17 H 1.08999 * 117.50744 * 0.02562 * 16 14 13 18 18 C 1.53005 * 117.49869 * 145.02445 * 16 14 13 19 19 C 1.52995 * 117.49605 * 116.25829 * 14 13 4 20 20 H 1.08999 * 117.49764 * 214.97767 * 19 14 13 21 21 Cl 1.80300 * 117.49989 * 359.97438 * 19 14 13 22 22 H 4.40637 * 5.51399 * 179.97438 * 4 1 2 23 23 H 1.09000 * 109.47698 * 50.51870 * 3 2 1 24 24 H 1.09002 * 109.46855 * 290.51807 * 3 2 1 25 25 H 0.97000 * 120.00147 * 179.97438 * 8 7 5 26 26 H 1.08998 * 109.46759 * 209.99862 * 13 4 3 27 27 H 1.09003 * 109.46632 * 330.00015 * 13 4 3 28 28 H 1.09004 * 109.47031 * 59.99094 * 18 16 14 29 29 H 1.08991 * 109.47539 * 179.97438 * 18 16 14 30 30 H 1.08997 * 109.46759 * 299.99725 * 18 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3633 -0.2274 5 6 3.4804 1.7645 -1.4899 6 1 4.1188 2.6248 -1.6269 7 6 3.0111 1.0657 -2.5937 8 7 1.9268 0.3265 -2.4924 9 14 3.9185 1.1744 -4.2229 10 1 5.3080 0.6801 -4.0495 11 1 3.2202 0.3419 -5.2350 12 1 3.9491 2.5873 -4.6793 13 6 3.2506 2.2965 0.8958 14 6 4.6438 2.1756 1.5165 15 1 5.1118 1.1946 1.4338 16 6 4.9268 2.9890 2.7810 17 1 4.1203 3.6100 3.1711 18 6 5.8455 2.3636 3.8325 19 6 5.5564 3.4017 1.4482 20 1 6.6248 3.2274 1.3209 21 17 4.9079 4.8782 0.6419 22 1 -1.0502 -0.0004 -0.0001 23 1 3.0097 -0.6526 -0.7932 24 1 3.0094 -0.3594 0.9625 25 1 1.5987 -0.1615 -3.2638 26 1 3.0989 3.3152 0.5390 27 1 2.4966 2.0582 1.6461 28 1 6.8228 2.1680 3.3910 29 1 5.9571 3.0498 4.6719 30 1 5.4115 1.4274 4.1834 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000897164573.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:49:39 Heat of formation + Delta-G solvation = 78.128349 kcal Electronic energy + Delta-G solvation = -13620.436147 eV Core-core repulsion = 11251.297815 eV Total energy + Delta-G solvation = -2369.138332 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.077 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -39.36331 -37.36318 -36.25604 -33.45557 -32.94302 -29.82166 -27.95546 -27.39047 -23.77047 -21.72369 -21.16760 -19.30014 -18.18286 -17.04383 -16.27127 -15.86250 -15.38534 -15.20902 -14.68556 -13.98780 -13.79274 -13.39033 -13.14080 -13.05993 -12.79854 -12.66164 -12.38030 -12.24820 -12.20870 -11.95940 -11.55624 -10.82358 -10.71250 -10.49402 -10.47140 -10.29521 -8.86636 -7.79136 -5.21256 1.36225 1.48186 1.49967 1.56176 2.32899 2.54228 2.62077 2.71912 3.31273 3.62350 3.73290 3.99648 4.08953 4.14970 4.42443 4.69804 4.80697 4.83462 4.89197 4.98353 5.05182 5.18440 5.27741 5.37194 5.51778 5.67111 5.74850 6.34985 7.15431 7.37924 7.88365 8.31312 9.22024 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.022677 B = 0.009879 C = 0.007785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.429282 B = 2833.541763 C = 3595.608734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.297 4.297 2 C -0.132 4.132 3 C 0.270 3.730 4 N -0.594 5.594 5 C -0.256 4.256 6 H 0.071 0.929 7 C -0.047 4.047 8 N -0.914 5.914 9 Si 0.953 3.047 10 H -0.278 1.278 11 H -0.298 1.298 12 H -0.284 1.284 13 C 0.168 3.832 14 C -0.150 4.150 15 H 0.111 0.889 16 C -0.124 4.124 17 H 0.111 0.889 18 C -0.117 4.117 19 C -0.076 4.076 20 H 0.146 0.854 21 Cl -0.167 7.167 22 H 0.220 0.780 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.245 0.755 26 H 0.053 0.947 27 H 0.045 0.955 28 H 0.064 0.936 29 H 0.076 0.924 30 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.894 2.909 11.291 13.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 C -0.135 4.135 3 C 0.145 3.855 4 N -0.314 5.314 5 C -0.385 4.385 6 H 0.088 0.912 7 C -0.243 4.243 8 N -0.559 5.559 9 Si 0.782 3.218 10 H -0.204 1.204 11 H -0.225 1.225 12 H -0.211 1.211 13 C 0.042 3.958 14 C -0.171 4.171 15 H 0.129 0.871 16 C -0.144 4.144 17 H 0.129 0.871 18 C -0.174 4.174 19 C -0.119 4.119 20 H 0.163 0.837 21 Cl -0.140 7.140 22 H 0.237 0.763 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.055 0.945 26 H 0.071 0.929 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.095 0.905 30 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 6.804 2.953 11.089 13.341 hybrid contribution -0.213 0.150 -1.516 1.538 sum 6.592 3.103 9.573 12.030 Atomic orbital electron populations 1.25001 0.96406 1.03064 1.07145 1.24762 0.96270 0.97728 0.94765 1.17696 0.82712 0.86962 0.98130 1.44166 1.74704 1.08534 1.03997 1.19334 1.23108 1.12902 0.83201 0.91154 1.25527 0.96982 1.01556 1.00243 1.70279 1.20692 1.35073 1.29835 0.85562 0.78675 0.77056 0.80486 1.20423 1.22497 1.21067 1.20538 0.92535 0.93873 0.88882 1.23589 0.98451 0.95261 0.99766 0.87064 1.22985 1.01402 1.01134 0.88843 0.87098 1.21392 0.98005 1.00954 0.97020 1.25456 0.98670 0.87327 1.00486 0.83654 1.98677 1.88815 1.43567 1.82917 0.76311 0.91668 0.91583 0.94549 0.92886 0.93692 0.91747 0.90460 0.91049 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -13.54 19.25 74.32 1.43 -12.10 16 2 C -0.13 -6.49 11.50 31.12 0.36 -6.13 16 3 C 0.27 12.73 5.41 84.57 0.46 13.19 16 4 N -0.59 -28.67 2.49 -712.55 -1.77 -30.44 16 5 C -0.26 -13.74 9.63 84.03 0.81 -12.93 16 6 H 0.07 3.80 7.92 -2.91 -0.02 3.77 16 7 C -0.05 -2.60 4.82 84.86 0.41 -2.19 16 8 N -0.91 -53.03 9.61 21.65 0.21 -52.82 16 9 Si 0.95 45.27 29.61 68.60 2.03 47.30 16 10 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.28 -13.41 7.11 99.48 0.71 -12.70 16 13 C 0.17 6.69 5.87 86.38 0.51 7.20 16 14 C -0.15 -4.69 5.73 -10.79 -0.06 -4.75 16 15 H 0.11 3.53 8.14 -2.39 -0.02 3.51 16 16 C -0.12 -2.95 5.97 -10.77 -0.06 -3.02 16 17 H 0.11 2.65 8.14 -2.39 -0.02 2.63 16 18 C -0.12 -2.01 10.19 71.98 0.73 -1.27 16 19 C -0.08 -2.13 6.67 30.62 0.20 -1.93 16 20 H 0.15 3.51 8.05 -2.39 -0.02 3.49 16 21 Cl -0.17 -5.43 27.38 -2.72 -0.07 -5.50 16 22 H 0.22 8.13 7.80 -4.41 -0.03 8.10 16 23 H 0.07 3.40 6.59 -2.39 -0.02 3.38 16 24 H 0.07 2.63 8.12 -2.39 -0.02 2.62 16 25 H 0.24 14.13 8.31 -92.71 -0.77 13.36 16 26 H 0.05 2.26 5.96 -2.39 -0.01 2.24 16 27 H 0.04 1.75 8.07 -2.39 -0.02 1.73 16 28 H 0.06 1.03 7.90 -2.38 -0.02 1.01 16 29 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 Total: -1.00 -62.04 276.72 6.28 -55.76 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 1.11 Total: 9.63 kcal Atomic # 6 Polarization: -28.71 SS G_CDS: 4.78 Total: -23.93 kcal Atomic # 7 Polarization: -81.70 SS G_CDS: -1.56 Total: -83.26 kcal Atomic # 14 Polarization: 45.27 SS G_CDS: 2.03 Total: 47.30 kcal Atomic # 17 Polarization: -5.43 SS G_CDS: -0.07 Total: -5.50 kcal Total: -62.04 6.28 -55.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000897164573.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.884 kcal (2) G-P(sol) polarization free energy of solvation -62.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.756 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds