Wall clock time and date at job start Sun Mar 29 2020 21:55:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86806 * 120.00214 * 2 1 4 4 H 1.48496 * 109.46870 * 239.99640 * 3 2 1 5 5 H 1.48495 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46950 * 119.99545 * 3 2 1 7 7 C 1.38761 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 180.02562 * 7 2 1 9 9 O 1.34917 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99905 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99752 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99804 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46760 * 180.02562 * 12 10 9 14 14 C 1.45761 * 117.94292 * 270.01768 * 13 12 10 15 15 C 1.52922 * 110.48247 * 160.92674 * 14 13 12 16 16 C 1.53171 * 108.62996 * 50.75086 * 15 14 13 17 17 C 1.53068 * 108.51490 * 292.41118 * 16 15 14 18 18 C 1.33347 * 117.95032 * 89.99985 * 13 12 10 19 19 O 1.21279 * 118.24209 * 2.22334 * 18 13 12 20 20 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47119 * 60.00312 * 12 10 9 22 22 H 1.09001 * 109.46895 * 299.99985 * 12 10 9 23 23 H 1.08995 * 109.30192 * 281.23610 * 14 13 12 24 24 H 1.09001 * 109.30141 * 40.82582 * 14 13 12 25 25 H 1.09003 * 109.60066 * 170.50695 * 15 14 13 26 26 H 1.08997 * 109.60766 * 290.83137 * 15 14 13 27 27 H 1.08998 * 109.57211 * 172.68289 * 16 15 14 28 28 H 1.09005 * 109.69025 * 52.21233 * 16 15 14 29 29 H 1.09002 * 109.40169 * 288.84451 * 17 16 15 30 30 H 1.09003 * 109.40095 * 169.01967 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6963 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6964 1.2126 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4331 0.0010 12 6 1.3808 -4.8393 0.0000 13 7 2.3898 -5.9015 0.0007 14 6 2.8615 -6.3963 -1.2866 15 6 4.1972 -7.1229 -1.1238 16 6 4.0601 -8.1525 0.0020 17 6 3.8830 -7.4046 1.3257 18 6 2.8194 -6.3546 1.1789 19 8 2.3243 -5.8945 2.1859 20 1 -0.4850 0.8400 -0.0004 21 1 0.7584 -4.9296 -0.8903 22 1 0.7577 -4.9299 0.8897 23 1 2.1248 -7.0852 -1.6997 24 1 2.9925 -5.5568 -1.9694 25 1 4.4537 -7.6297 -2.0542 26 1 4.9766 -6.4036 -0.8723 27 1 4.9588 -8.7678 0.0455 28 1 3.1910 -8.7842 -0.1819 29 1 4.8245 -6.9301 1.6023 30 1 3.5907 -8.1099 2.1037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000915453916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:48 Heat of formation + Delta-G solvation = -117.248776 kcal Electronic energy + Delta-G solvation = -15930.153378 eV Core-core repulsion = 13111.833694 eV Total energy + Delta-G solvation = -2818.319684 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.37396 -38.64241 -36.29927 -35.21705 -33.70108 -32.09656 -29.63380 -28.01067 -25.15040 -24.23799 -22.35136 -20.26600 -18.40257 -17.68735 -16.75535 -16.41211 -16.25205 -15.35710 -14.52921 -14.47706 -14.26513 -14.08062 -13.71159 -13.40051 -13.08598 -12.20346 -11.98278 -11.65212 -11.56852 -11.24607 -11.09849 -11.00068 -10.95903 -10.44148 -10.30563 -9.79937 -9.44754 -9.24391 -8.53346 -8.38510 -6.36425 -4.04274 2.84568 3.15676 3.17092 3.22092 3.27017 3.57427 4.03158 4.62120 4.69532 4.71456 4.73564 4.81919 5.15632 5.36926 5.39169 5.54126 5.64968 5.65823 5.77317 5.80450 5.89736 6.00541 6.16204 6.40585 6.85377 7.42809 7.69229 7.99921 8.42400 8.75982 9.12056 9.89634 10.81548 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.051004 B = 0.006377 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.840615 B = 4389.505448 C = 4468.236008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.042 3.958 3 Si 0.944 3.056 4 H -0.270 1.270 5 H -0.278 1.278 6 H -0.270 1.270 7 C -0.381 4.381 8 H 0.093 0.907 9 O -0.215 6.215 10 C 0.385 3.615 11 O -0.551 6.551 12 C 0.123 3.877 13 N -0.583 5.583 14 C 0.116 3.884 15 C -0.136 4.136 16 C -0.122 4.122 17 C -0.131 4.131 18 C 0.520 3.480 19 O -0.552 6.552 20 H 0.270 0.730 21 H 0.106 0.894 22 H 0.116 0.884 23 H 0.066 0.934 24 H 0.078 0.922 25 H 0.082 0.918 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.099 0.901 30 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.078 -14.535 -3.630 15.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.162 4.162 3 Si 0.769 3.231 4 H -0.196 1.196 5 H -0.203 1.203 6 H -0.195 1.195 7 C -0.457 4.457 8 H 0.111 0.889 9 O -0.121 6.121 10 C 0.230 3.770 11 O -0.448 6.448 12 C -0.002 4.002 13 N -0.316 5.316 14 C -0.007 4.007 15 C -0.174 4.174 16 C -0.159 4.159 17 C -0.171 4.171 18 C 0.308 3.692 19 O -0.430 6.430 20 H 0.079 0.921 21 H 0.124 0.876 22 H 0.134 0.866 23 H 0.084 0.916 24 H 0.096 0.904 25 H 0.101 0.899 26 H 0.095 0.905 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.117 0.883 30 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 4.953 -14.120 -3.106 15.283 hybrid contribution 0.495 0.911 -0.102 1.042 sum 5.448 -13.209 -3.208 14.644 Atomic orbital electron populations 1.69980 1.05964 1.27722 1.46666 1.25323 0.95814 0.98791 0.96266 0.85743 0.78619 0.79504 0.79276 1.19562 1.20347 1.19524 1.21141 0.92278 0.79870 1.52435 0.88913 1.83867 1.39310 1.13300 1.75664 1.23587 0.87121 0.87570 0.78740 1.90531 1.15673 1.87945 1.50650 1.20729 0.90363 0.83242 1.05822 1.46896 1.41977 1.36425 1.06290 1.21405 0.95653 0.98798 0.84870 1.21843 0.97473 0.98495 0.99567 1.21620 1.02684 0.97775 0.93844 1.21625 0.98825 0.97139 0.99480 1.20088 0.83202 0.83183 0.82711 1.90727 1.56995 1.59481 1.35792 0.92060 0.87570 0.86582 0.91620 0.90370 0.89943 0.90483 0.90757 0.91183 0.88278 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 2 C 0.04 1.22 5.49 -17.53 -0.10 1.12 16 3 Si 0.94 21.92 29.55 -169.99 -5.02 16.90 16 4 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.17 7.11 56.52 0.40 -5.76 16 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 7 C -0.38 -11.67 9.65 30.93 0.30 -11.37 16 8 H 0.09 2.86 6.86 -52.49 -0.36 2.50 16 9 O -0.21 -6.38 9.75 -20.70 -0.20 -6.59 16 10 C 0.38 9.92 7.96 36.01 0.29 10.21 16 11 O -0.55 -15.35 15.66 -19.05 -0.30 -15.65 16 12 C 0.12 2.39 5.81 -5.19 -0.03 2.36 16 13 N -0.58 -9.85 2.30 -176.33 -0.41 -10.26 16 14 C 0.12 1.45 6.32 -4.48 -0.03 1.42 16 15 C -0.14 -1.38 6.02 -26.68 -0.16 -1.54 16 16 C -0.12 -1.10 6.02 -26.61 -0.16 -1.26 16 17 C -0.13 -1.61 6.04 -28.10 -0.17 -1.78 16 18 C 0.52 9.21 7.44 -11.87 -0.09 9.12 16 19 O -0.55 -12.27 16.18 5.56 0.09 -12.18 16 20 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 21 H 0.11 1.68 8.02 -51.93 -0.42 1.27 16 22 H 0.12 2.31 7.13 -51.93 -0.37 1.94 16 23 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 24 H 0.08 1.07 8.11 -51.93 -0.42 0.65 16 25 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 27 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.07 0.58 8.13 -51.93 -0.42 0.15 16 29 H 0.10 1.21 8.14 -51.93 -0.42 0.78 16 30 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 264.55 15.07 3.99 3.99 Total: -1.00 -37.09 264.55 -4.90 -41.99 By element: Atomic # 1 Polarization: 2.43 SS G_CDS: -3.66 Total: -1.23 kcal Atomic # 6 Polarization: 8.42 SS G_CDS: -0.15 Total: 8.27 kcal Atomic # 7 Polarization: -35.85 SS G_CDS: 0.35 Total: -35.50 kcal Atomic # 8 Polarization: -34.01 SS G_CDS: -0.41 Total: -34.42 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -37.09 -4.90 -41.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915453916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.256 kcal (2) G-P(sol) polarization free energy of solvation -37.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.346 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds