Wall clock time and date at job start Sun Mar 29 2020 21:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31436 * 1 3 3 Si 1.86806 * 120.00214 * 2 1 4 4 H 1.48496 * 109.46870 * 239.99640 * 3 2 1 5 5 H 1.48495 * 109.46709 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.46950 * 119.99545 * 3 2 1 7 7 C 1.38761 * 119.99871 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99838 * 180.02562 * 7 2 1 9 9 O 1.34917 * 120.00006 * 0.02562 * 7 2 1 10 10 C 1.34315 * 116.99905 * 179.97438 * 9 7 2 11 11 O 1.21207 * 119.99752 * 0.02562 * 10 9 7 12 12 C 1.50700 * 119.99804 * 180.02562 * 10 9 7 13 13 N 1.46501 * 109.46760 * 180.02562 * 12 10 9 14 14 C 1.45761 * 117.94292 * 270.01768 * 13 12 10 15 15 C 1.52922 * 110.48247 * 160.92674 * 14 13 12 16 16 C 1.53171 * 108.62996 * 50.75086 * 15 14 13 17 17 C 1.53068 * 108.51490 * 292.41118 * 16 15 14 18 18 C 1.33347 * 117.95032 * 89.99985 * 13 12 10 19 19 O 1.21279 * 118.24209 * 2.22334 * 18 13 12 20 20 H 0.96996 * 120.00069 * 0.02562 * 1 2 3 21 21 H 1.09000 * 109.47119 * 60.00312 * 12 10 9 22 22 H 1.09001 * 109.46895 * 299.99985 * 12 10 9 23 23 H 1.08995 * 109.30192 * 281.23610 * 14 13 12 24 24 H 1.09001 * 109.30141 * 40.82582 * 14 13 12 25 25 H 1.09003 * 109.60066 * 170.50695 * 15 14 13 26 26 H 1.08997 * 109.60766 * 290.83137 * 15 14 13 27 27 H 1.08998 * 109.57211 * 172.68289 * 16 15 14 28 28 H 1.09005 * 109.69025 * 52.21233 * 16 15 14 29 29 H 1.09002 * 109.40169 * 288.84451 * 17 16 15 30 30 H 1.09003 * 109.40095 * 169.01967 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3144 0.0000 0.0000 3 14 2.2484 1.6178 0.0000 4 1 3.1022 1.6963 -1.2124 5 1 1.2834 2.7464 -0.0006 6 1 3.1021 1.6964 1.2126 7 6 2.0081 -1.2017 0.0005 8 1 3.0881 -1.2017 0.0010 9 8 1.3335 -2.3701 0.0005 10 6 2.0650 -3.4966 0.0005 11 8 3.2755 -3.4331 0.0010 12 6 1.3808 -4.8393 0.0000 13 7 2.3898 -5.9015 0.0007 14 6 2.8615 -6.3963 -1.2866 15 6 4.1972 -7.1229 -1.1238 16 6 4.0601 -8.1525 0.0020 17 6 3.8830 -7.4046 1.3257 18 6 2.8194 -6.3546 1.1789 19 8 2.3243 -5.8945 2.1859 20 1 -0.4850 0.8400 -0.0004 21 1 0.7584 -4.9296 -0.8903 22 1 0.7577 -4.9299 0.8897 23 1 2.1248 -7.0852 -1.6997 24 1 2.9925 -5.5568 -1.9694 25 1 4.4537 -7.6297 -2.0542 26 1 4.9766 -6.4036 -0.8723 27 1 4.9588 -8.7678 0.0455 28 1 3.1910 -8.7842 -0.1819 29 1 4.8245 -6.9301 1.6023 30 1 3.5907 -8.1099 2.1037 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000915453916.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:47 Heat of formation + Delta-G solvation = -143.449490 kcal Electronic energy + Delta-G solvation = -15931.289526 eV Core-core repulsion = 13111.833694 eV Total energy + Delta-G solvation = -2819.455832 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.82517 -40.64680 -37.66518 -37.19127 -35.01046 -34.33734 -30.70973 -29.62106 -27.22826 -25.34195 -23.56258 -22.05247 -19.95856 -19.53323 -18.74061 -17.71243 -17.67453 -16.97224 -16.52465 -16.27461 -15.95805 -15.16597 -14.95096 -14.48660 -14.31981 -14.05333 -13.64176 -13.62783 -12.97348 -12.72685 -12.36924 -12.24518 -12.19398 -12.08714 -11.84993 -11.80602 -11.24511 -10.77702 -10.73545 -9.88238 -8.57145 -6.38145 1.26923 1.28996 1.42315 1.50725 1.59879 1.88428 2.15534 2.83370 2.93179 3.57258 3.83338 3.90686 3.94046 4.14967 4.35327 4.49830 4.52021 4.56583 4.68904 4.86761 4.95118 5.03984 5.09353 5.14440 5.28876 5.39419 5.78993 6.40135 6.59828 6.86608 7.07046 7.70305 8.63148 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.051004 B = 0.006377 C = 0.006265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 548.840615 B = 4389.505448 C = 4468.236008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C -0.004 4.004 3 Si 1.019 2.981 4 H -0.258 1.258 5 H -0.256 1.256 6 H -0.266 1.266 7 C -0.424 4.424 8 H 0.078 0.922 9 O -0.244 6.244 10 C 0.381 3.619 11 O -0.577 6.577 12 C 0.130 3.870 13 N -0.583 5.583 14 C 0.104 3.896 15 C -0.133 4.133 16 C -0.111 4.111 17 C -0.126 4.126 18 C 0.505 3.495 19 O -0.610 6.610 20 H 0.280 0.720 21 H 0.147 0.853 22 H 0.109 0.891 23 H 0.105 0.895 24 H 0.061 0.939 25 H 0.119 0.881 26 H 0.052 0.948 27 H 0.105 0.895 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.847 -15.692 -4.758 17.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.204 4.204 3 Si 0.837 3.163 4 H -0.183 1.183 5 H -0.180 1.180 6 H -0.191 1.191 7 C -0.500 4.500 8 H 0.096 0.904 9 O -0.152 6.152 10 C 0.228 3.772 11 O -0.475 6.475 12 C 0.005 3.995 13 N -0.314 5.314 14 C -0.017 4.017 15 C -0.170 4.170 16 C -0.148 4.148 17 C -0.166 4.166 18 C 0.296 3.704 19 O -0.492 6.492 20 H 0.090 0.910 21 H 0.164 0.836 22 H 0.127 0.873 23 H 0.123 0.877 24 H 0.080 0.920 25 H 0.137 0.863 26 H 0.071 0.929 27 H 0.123 0.877 28 H 0.106 0.894 29 H 0.116 0.884 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 5.729 -15.324 -4.275 16.910 hybrid contribution 0.253 1.188 0.237 1.238 sum 5.983 -14.136 -4.038 15.872 Atomic orbital electron populations 1.70061 1.07631 1.29566 1.46593 1.26572 0.96948 1.02340 0.94535 0.84680 0.77634 0.74241 0.79712 1.18259 1.17969 1.19077 1.21352 0.92041 0.81245 1.55370 0.90434 1.83889 1.40320 1.14207 1.76792 1.24941 0.87180 0.88686 0.76433 1.90489 1.17072 1.88517 1.51419 1.20788 0.90916 0.80512 1.07277 1.47192 1.41247 1.34974 1.07981 1.21819 0.98300 0.99190 0.82434 1.21885 0.95025 0.98258 1.01876 1.21637 1.04995 0.97285 0.90898 1.21712 0.96426 0.96049 1.02387 1.21237 0.83452 0.83714 0.81999 1.90692 1.59076 1.61719 1.37725 0.91044 0.83591 0.87318 0.87733 0.92004 0.86273 0.92928 0.87662 0.89400 0.88370 0.86794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -54.75 13.67 21.63 0.30 -54.46 16 2 C 0.00 -0.21 5.49 84.88 0.47 0.26 16 3 Si 1.02 44.83 29.55 68.60 2.03 46.86 16 4 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 5 H -0.26 -10.26 7.11 99.48 0.71 -9.55 16 6 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 7 C -0.42 -26.94 9.65 67.95 0.66 -26.28 16 8 H 0.08 5.01 6.86 -2.91 -0.02 4.99 16 9 O -0.24 -15.13 9.75 14.86 0.14 -14.98 16 10 C 0.38 20.36 7.96 71.24 0.57 20.93 16 11 O -0.58 -33.37 15.66 20.78 0.33 -33.04 16 12 C 0.13 5.11 5.81 85.63 0.50 5.61 16 13 N -0.58 -19.31 2.30 -830.98 -1.91 -21.23 16 14 C 0.10 2.37 6.32 86.49 0.55 2.92 16 15 C -0.13 -2.28 6.02 30.63 0.18 -2.10 16 16 C -0.11 -1.57 6.02 30.67 0.18 -1.39 16 17 C -0.13 -2.88 6.04 29.71 0.18 -2.70 16 18 C 0.50 17.83 7.44 87.71 0.65 18.48 16 19 O -0.61 -27.98 16.18 -3.03 -0.05 -28.03 16 20 H 0.28 15.38 8.31 -92.71 -0.77 14.61 16 21 H 0.15 4.48 8.02 -2.39 -0.02 4.46 16 22 H 0.11 4.47 7.13 -2.39 -0.02 4.45 16 23 H 0.10 1.62 8.14 -2.39 -0.02 1.61 16 24 H 0.06 1.62 8.11 -2.39 -0.02 1.60 16 25 H 0.12 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.05 1.17 8.13 -2.39 -0.02 1.15 16 27 H 0.10 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.09 1.01 8.13 -2.38 -0.02 0.99 16 29 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 30 H 0.11 2.22 8.14 -2.39 -0.02 2.20 16 Total: -1.00 -85.00 264.55 5.90 -79.09 By element: Atomic # 1 Polarization: 8.93 SS G_CDS: 1.14 Total: 10.07 kcal Atomic # 6 Polarization: 11.78 SS G_CDS: 3.93 Total: 15.72 kcal Atomic # 7 Polarization: -74.07 SS G_CDS: -1.62 Total: -75.68 kcal Atomic # 8 Polarization: -76.48 SS G_CDS: 0.42 Total: -76.05 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -85.00 5.90 -79.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000915453916.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.355 kcal (2) G-P(sol) polarization free energy of solvation -84.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -143.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds