Wall clock time and date at job start Sun Mar 29 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47088 * 2 1 4 4 C 1.46900 * 111.00239 * 298.13825 * 3 2 1 5 5 C 1.50697 * 109.46834 * 293.13894 * 4 3 2 6 6 H 1.07997 * 120.00332 * 354.96979 * 5 4 3 7 7 C 1.37881 * 119.99975 * 174.97023 * 5 4 3 8 8 N 1.31515 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00226 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47045 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46917 * 120.00215 * 9 7 5 12 12 H 1.48497 * 109.47244 * 240.00290 * 9 7 5 13 13 C 1.46906 * 110.99948 * 62.09334 * 3 2 1 14 14 C 1.50696 * 109.47150 * 66.04274 * 13 3 2 15 15 N 1.29424 * 125.69355 * 89.95784 * 14 13 3 16 16 N 1.26392 * 116.47530 * 179.74604 * 15 14 13 17 17 C 1.29422 * 116.47277 * 0.53836 * 16 15 14 18 18 S 1.71213 * 125.69811 * 270.00018 * 14 13 3 19 19 H 1.08998 * 109.47310 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46993 * 299.94865 * 1 2 3 21 21 H 1.09001 * 109.46611 * 59.95240 * 1 2 3 22 22 H 1.08997 * 109.47365 * 240.00388 * 2 1 3 23 23 H 1.09006 * 109.47206 * 119.99946 * 2 1 3 24 24 H 1.08999 * 109.46760 * 53.13215 * 4 3 2 25 25 H 1.08994 * 109.47362 * 173.13797 * 4 3 2 26 26 H 0.96993 * 120.00213 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.46642 * 306.04733 * 13 3 2 28 28 H 1.08997 * 109.46978 * 186.04634 * 13 3 2 29 29 H 1.07999 * 125.69455 * 179.76196 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5854 2.0970 -1.2093 5 6 2.2604 1.4964 -2.4154 6 1 3.0042 0.7237 -2.2891 7 6 1.9284 1.9335 -3.6803 8 7 1.0223 2.8741 -3.8342 9 14 2.7656 1.1896 -5.1753 10 1 3.7386 0.1576 -4.7354 11 1 1.7449 0.5642 -6.0542 12 1 3.4784 2.2551 -5.9248 13 6 1.5899 2.0953 1.2120 14 6 2.2540 1.4802 2.4168 15 7 3.3936 1.8375 2.9156 16 7 3.7856 1.2034 3.9363 17 6 3.0091 0.2599 4.3628 18 16 1.6275 0.1913 3.3537 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5130 0.8904 21 1 -0.3632 0.5146 -0.8896 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.5043 2.0067 -1.3155 25 1 1.8560 3.1497 -1.1281 26 1 0.7890 3.1819 -4.7239 27 1 0.5076 2.0172 1.3143 28 1 1.8731 3.1452 1.1374 29 1 3.1987 -0.3750 5.2156 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000929773856.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:18 Heat of formation + Delta-G solvation = 72.281984 kcal Electronic energy + Delta-G solvation = -13632.896338 eV Core-core repulsion = 11297.840946 eV Total energy + Delta-G solvation = -2335.055392 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.08573 -37.52636 -32.85830 -31.84502 -29.64222 -28.34415 -26.16164 -24.42533 -23.18204 -20.72871 -19.54608 -18.82526 -16.35682 -15.89262 -15.74635 -14.96172 -14.67338 -14.25369 -13.69587 -13.23199 -13.04418 -12.20398 -11.95901 -11.76205 -11.26118 -11.09312 -10.75815 -10.66577 -10.36283 -10.34717 -10.10959 -9.94862 -9.68207 -9.48906 -9.26564 -8.48006 -7.38341 -6.07298 -4.08336 0.56951 1.05084 1.48458 2.73901 3.29176 3.37188 3.42222 4.20692 4.40469 4.79756 4.89809 5.18999 5.28919 5.49965 5.59455 5.70393 5.82528 5.98386 5.99518 6.25394 6.56123 6.75564 7.16243 7.29561 7.72081 7.95651 8.05451 8.42545 8.70801 8.99201 9.56014 11.03382 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.048318 B = 0.006619 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.360024 B = 4229.204412 C = 4364.059098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.052 3.948 3 N -0.525 5.525 4 C 0.190 3.810 5 C -0.505 4.505 6 H 0.064 0.936 7 C 0.057 3.943 8 N -0.898 5.898 9 Si 0.897 3.103 10 H -0.272 1.272 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.122 3.878 14 C 0.027 3.973 15 N -0.255 5.255 16 N -0.260 5.260 17 C -0.063 4.063 18 S 0.153 5.847 19 H 0.052 0.948 20 H 0.042 0.958 21 H 0.074 0.926 22 H 0.089 0.911 23 H 0.048 0.952 24 H 0.008 0.992 25 H 0.030 0.970 26 H 0.261 0.739 27 H 0.058 0.942 28 H 0.104 0.896 29 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.803 -6.376 13.110 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.077 4.077 3 N -0.250 5.250 4 C 0.066 3.934 5 C -0.544 4.544 6 H 0.082 0.918 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.725 3.275 10 H -0.196 1.196 11 H -0.211 1.211 12 H -0.210 1.210 13 C -0.010 4.010 14 C -0.253 4.253 15 N -0.093 5.093 16 N -0.096 5.096 17 C -0.362 4.362 18 S 0.394 5.606 19 H 0.071 0.929 20 H 0.061 0.939 21 H 0.093 0.907 22 H 0.107 0.893 23 H 0.067 0.933 24 H 0.026 0.974 25 H 0.048 0.952 26 H 0.071 0.929 27 H 0.076 0.924 28 H 0.122 0.878 29 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -2.038 -6.068 13.012 14.501 hybrid contribution -0.382 -0.392 -0.751 0.929 sum -2.419 -6.459 12.261 14.068 Atomic orbital electron populations 1.22405 0.98914 1.01495 1.02070 1.22139 0.92470 0.91309 1.01770 1.62376 1.59288 1.02012 1.01349 1.19854 0.94991 0.93879 0.84683 1.21135 1.22155 1.21316 0.89811 0.91783 1.24962 0.95237 0.95211 0.99056 1.69953 1.31986 1.28989 1.22832 0.86445 0.79341 0.79131 0.82554 1.19648 1.21126 1.20980 1.20682 0.95700 0.99007 0.85627 1.29537 0.95242 0.97819 1.02667 1.71436 1.10271 1.22934 1.04648 1.71454 1.26759 1.04794 1.06576 1.30360 0.96138 1.02964 1.06779 1.83742 1.23186 1.32616 1.21074 0.92864 0.93940 0.90732 0.89275 0.93333 0.97382 0.95196 0.92921 0.92442 0.87800 0.77449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.10 9.26 37.16 0.34 -2.76 15 2 C 0.05 0.95 5.65 -3.82 -0.02 0.93 15 3 N -0.53 -10.94 4.69 -237.52 -1.11 -12.05 15 4 C 0.19 4.70 4.52 -4.98 -0.02 4.67 15 5 C -0.51 -13.77 8.40 -34.44 -0.29 -14.06 15 6 H 0.06 1.76 7.36 -52.49 -0.39 1.37 15 7 C 0.06 1.57 5.46 -17.82 -0.10 1.47 15 8 N -0.90 -25.89 13.29 55.43 0.74 -25.15 15 9 Si 0.90 21.34 29.54 -169.99 -5.02 16.32 15 10 H -0.27 -6.39 7.11 56.52 0.40 -5.99 15 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 15 12 H -0.28 -6.75 7.11 56.52 0.40 -6.34 15 13 C 0.12 2.13 5.36 -4.97 -0.03 2.11 15 14 C 0.03 0.45 6.30 -13.29 -0.08 0.36 15 15 N -0.26 -4.69 11.66 32.58 0.38 -4.31 15 16 N -0.26 -4.27 11.66 29.45 0.34 -3.93 15 17 C -0.06 -0.76 12.39 51.75 0.64 -0.12 15 18 S 0.15 1.85 21.55 -107.50 -2.32 -0.47 15 19 H 0.05 0.75 8.14 -51.93 -0.42 0.33 15 20 H 0.04 0.62 6.32 -51.93 -0.33 0.29 15 21 H 0.07 1.42 6.30 -51.93 -0.33 1.10 15 22 H 0.09 1.81 6.97 -51.93 -0.36 1.44 15 23 H 0.05 0.80 5.95 -51.93 -0.31 0.49 15 24 H 0.01 0.22 6.02 -51.93 -0.31 -0.10 15 25 H 0.03 0.79 7.91 -51.93 -0.41 0.38 15 26 H 0.26 7.14 8.31 -40.82 -0.34 6.80 15 27 H 0.06 0.90 6.07 -51.93 -0.32 0.59 15 28 H 0.10 1.85 7.92 -51.93 -0.41 1.44 15 29 H 0.21 1.56 8.06 -52.49 -0.42 1.13 15 LS Contribution 256.35 15.07 3.86 3.86 Total: -1.00 -30.66 256.35 -5.83 -36.49 By element: Atomic # 1 Polarization: -0.22 SS G_CDS: -3.14 Total: -3.36 kcal Atomic # 6 Polarization: -7.84 SS G_CDS: 0.44 Total: -7.39 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.35 Total: -45.45 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.32 Total: -0.47 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -30.66 -5.83 -36.49 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929773856.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.772 kcal (2) G-P(sol) polarization free energy of solvation -30.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds