Wall clock time and date at job start Sun Mar 29 2020 21:52:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46902 * 109.47088 * 2 1 4 4 C 1.46900 * 111.00239 * 298.13825 * 3 2 1 5 5 C 1.50697 * 109.46834 * 293.13894 * 4 3 2 6 6 H 1.07997 * 120.00332 * 354.96979 * 5 4 3 7 7 C 1.37881 * 119.99975 * 174.97023 * 5 4 3 8 8 N 1.31515 * 120.00113 * 359.97438 * 7 5 4 9 9 Si 1.86803 * 120.00226 * 179.97438 * 7 5 4 10 10 H 1.48498 * 109.47045 * 0.02562 * 9 7 5 11 11 H 1.48503 * 109.46917 * 120.00215 * 9 7 5 12 12 H 1.48497 * 109.47244 * 240.00290 * 9 7 5 13 13 C 1.46906 * 110.99948 * 62.09334 * 3 2 1 14 14 C 1.50696 * 109.47150 * 66.04274 * 13 3 2 15 15 N 1.29424 * 125.69355 * 89.95784 * 14 13 3 16 16 N 1.26392 * 116.47530 * 179.74604 * 15 14 13 17 17 C 1.29422 * 116.47277 * 0.53836 * 16 15 14 18 18 S 1.71213 * 125.69811 * 270.00018 * 14 13 3 19 19 H 1.08998 * 109.47310 * 179.97438 * 1 2 3 20 20 H 1.08997 * 109.46993 * 299.94865 * 1 2 3 21 21 H 1.09001 * 109.46611 * 59.95240 * 1 2 3 22 22 H 1.08997 * 109.47365 * 240.00388 * 2 1 3 23 23 H 1.09006 * 109.47206 * 119.99946 * 2 1 3 24 24 H 1.08999 * 109.46760 * 53.13215 * 4 3 2 25 25 H 1.08994 * 109.47362 * 173.13797 * 4 3 2 26 26 H 0.96993 * 120.00213 * 179.97438 * 8 7 5 27 27 H 1.08996 * 109.46642 * 306.04733 * 13 3 2 28 28 H 1.08997 * 109.46978 * 186.04634 * 13 3 2 29 29 H 1.07999 * 125.69455 * 179.76196 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.5854 2.0970 -1.2093 5 6 2.2604 1.4964 -2.4154 6 1 3.0042 0.7237 -2.2891 7 6 1.9284 1.9335 -3.6803 8 7 1.0223 2.8741 -3.8342 9 14 2.7656 1.1896 -5.1753 10 1 3.7386 0.1576 -4.7354 11 1 1.7449 0.5642 -6.0542 12 1 3.4784 2.2551 -5.9248 13 6 1.5899 2.0953 1.2120 14 6 2.2540 1.4802 2.4168 15 7 3.3936 1.8375 2.9156 16 7 3.7856 1.2034 3.9363 17 6 3.0091 0.2599 4.3628 18 16 1.6275 0.1913 3.3537 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5130 0.8904 21 1 -0.3632 0.5146 -0.8896 22 1 1.8934 -0.5138 -0.8900 23 1 1.8934 -0.5138 0.8900 24 1 0.5043 2.0067 -1.3155 25 1 1.8560 3.1497 -1.1281 26 1 0.7890 3.1819 -4.7239 27 1 0.5076 2.0172 1.3143 28 1 1.8731 3.1452 1.1374 29 1 3.1987 -0.3750 5.2156 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000929773856.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:52:18 Heat of formation + Delta-G solvation = 49.511248 kcal Electronic energy + Delta-G solvation = -13633.883751 eV Core-core repulsion = 11297.840946 eV Total energy + Delta-G solvation = -2336.042805 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 227.079 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.25328 -39.10249 -34.85589 -33.17355 -31.13303 -29.89705 -27.74043 -25.77281 -24.97640 -22.12881 -20.89403 -20.01721 -18.39051 -17.25267 -17.09329 -16.53412 -16.22839 -15.79041 -15.12173 -14.66729 -14.34066 -13.96400 -13.47514 -13.17057 -13.04629 -12.75438 -12.58223 -12.48622 -11.94930 -11.70903 -11.47887 -11.30912 -11.18767 -10.91140 -10.59984 -10.54716 -9.02558 -8.18965 -6.27450 -0.50106 0.01082 0.41025 1.40567 1.42582 1.54597 1.58173 2.41234 3.03872 3.14477 3.36779 3.82833 3.97504 4.18844 4.34452 4.41311 4.55270 4.59184 4.65289 4.88634 4.99935 5.18594 5.34127 5.49148 5.66561 6.04866 6.27179 6.54051 6.87317 7.41418 7.59026 8.91605 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.048318 B = 0.006619 C = 0.006415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.360024 B = 4229.204412 C = 4364.059098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.053 3.947 3 N -0.543 5.543 4 C 0.206 3.794 5 C -0.519 4.519 6 H 0.056 0.944 7 C 0.007 3.993 8 N -0.930 5.930 9 Si 0.963 3.037 10 H -0.267 1.267 11 H -0.276 1.276 12 H -0.281 1.281 13 C 0.126 3.874 14 C -0.010 4.010 15 N -0.294 5.294 16 N -0.301 5.301 17 C -0.045 4.045 18 S 0.235 5.765 19 H 0.081 0.919 20 H 0.062 0.938 21 H 0.041 0.959 22 H 0.065 0.935 23 H 0.072 0.928 24 H -0.004 1.004 25 H 0.001 0.999 26 H 0.264 0.736 27 H 0.077 0.923 28 H 0.087 0.913 29 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.191 -8.482 14.461 17.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.075 4.075 3 N -0.268 5.268 4 C 0.081 3.919 5 C -0.558 4.558 6 H 0.075 0.925 7 C -0.191 4.191 8 N -0.571 5.571 9 Si 0.788 3.212 10 H -0.192 1.192 11 H -0.202 1.202 12 H -0.207 1.207 13 C -0.005 4.005 14 C -0.290 4.290 15 N -0.132 5.132 16 N -0.137 5.137 17 C -0.344 4.344 18 S 0.477 5.523 19 H 0.099 0.901 20 H 0.081 0.919 21 H 0.060 0.940 22 H 0.083 0.917 23 H 0.090 0.910 24 H 0.014 0.986 25 H 0.019 0.981 26 H 0.073 0.927 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -2.430 -8.186 14.381 16.725 hybrid contribution -0.289 0.183 -1.018 1.073 sum -2.718 -8.003 13.363 15.811 Atomic orbital electron populations 1.22295 0.97142 1.03104 1.01387 1.22132 0.93945 0.89729 1.01709 1.62165 1.60276 1.03111 1.01224 1.19456 0.93867 0.92504 0.86103 1.21407 1.22073 1.21144 0.91141 0.92531 1.25777 0.95813 0.95564 1.01953 1.70060 1.33244 1.30177 1.23622 0.85426 0.78450 0.78355 0.78938 1.19174 1.20185 1.20721 1.20536 0.96856 0.98119 0.85003 1.29213 0.95878 1.00515 1.03377 1.71406 1.11560 1.24475 1.05752 1.71420 1.28379 1.06808 1.07102 1.31164 0.95054 1.01274 1.06908 1.83366 1.21414 1.28919 1.18637 0.90052 0.91925 0.94040 0.91690 0.90957 0.98637 0.98127 0.92697 0.90535 0.89490 0.72807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -5.61 9.26 71.98 0.67 -4.95 15 2 C 0.05 1.91 5.65 86.30 0.49 2.39 15 3 N -0.54 -22.96 4.69 -905.38 -4.24 -27.21 15 4 C 0.21 10.58 4.52 85.56 0.39 10.97 15 5 C -0.52 -29.01 8.40 25.60 0.21 -28.79 15 6 H 0.06 3.18 7.36 -2.91 -0.02 3.16 15 7 C 0.01 0.41 5.46 84.66 0.46 0.87 15 8 N -0.93 -54.73 13.29 21.45 0.28 -54.45 15 9 Si 0.96 44.14 29.54 68.60 2.03 46.17 15 10 H -0.27 -11.95 7.11 99.48 0.71 -11.24 15 11 H -0.28 -12.21 7.11 99.48 0.71 -11.50 15 12 H -0.28 -12.72 7.11 99.48 0.71 -12.02 15 13 C 0.13 4.45 5.36 85.55 0.46 4.90 15 14 C -0.01 -0.31 6.30 88.46 0.56 0.25 15 15 N -0.29 -10.68 11.66 -50.85 -0.59 -11.27 15 16 N -0.30 -9.42 11.66 -60.75 -0.71 -10.13 15 17 C -0.05 -0.93 12.39 130.60 1.62 0.69 15 18 S 0.24 4.82 21.55 -56.49 -1.22 3.61 15 19 H 0.08 2.06 8.14 -2.39 -0.02 2.04 15 20 H 0.06 1.67 6.32 -2.39 -0.02 1.65 15 21 H 0.04 1.57 6.30 -2.39 -0.02 1.56 15 22 H 0.06 2.64 6.97 -2.39 -0.02 2.62 15 23 H 0.07 2.22 5.95 -2.38 -0.01 2.21 15 24 H 0.00 -0.21 6.02 -2.39 -0.01 -0.23 15 25 H 0.00 0.04 7.91 -2.39 -0.02 0.02 15 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 15 27 H 0.08 2.34 6.07 -2.39 -0.01 2.32 15 28 H 0.09 3.27 7.92 -2.39 -0.02 3.25 15 29 H 0.26 2.43 8.06 -2.91 -0.02 2.40 15 Total: -1.00 -68.42 256.35 1.56 -66.86 By element: Atomic # 1 Polarization: -1.07 SS G_CDS: 1.16 Total: 0.09 kcal Atomic # 6 Polarization: -18.52 SS G_CDS: 4.85 Total: -13.67 kcal Atomic # 7 Polarization: -97.80 SS G_CDS: -5.26 Total: -103.06 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: 4.82 SS G_CDS: -1.22 Total: 3.61 kcal Total: -68.42 1.56 -66.86 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000929773856.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.371 kcal (2) G-P(sol) polarization free energy of solvation -68.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.860 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds