Wall clock time and date at job start Sun Mar 29 2020 22:23:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86791 * 120.00358 * 2 1 4 4 H 1.48499 * 109.47312 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.46945 * 299.99820 * 3 2 1 6 6 H 1.48500 * 109.46950 * 59.99710 * 3 2 1 7 7 C 1.38821 * 119.99453 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99460 * 180.02562 * 7 2 1 9 9 N 1.36936 * 120.00366 * 0.02562 * 7 2 1 10 10 C 1.46500 * 120.00130 * 179.97438 * 9 7 2 11 11 H 1.09000 * 112.84315 * 333.62530 * 10 9 7 12 12 C 1.53771 * 113.61344 * 104.93405 * 10 9 7 13 13 C 1.53773 * 87.08266 * 89.11698 * 12 10 9 14 14 H 1.09002 * 113.69179 * 139.99447 * 13 12 10 15 15 N 1.46501 * 113.61640 * 270.88233 * 13 12 10 16 16 C 1.34773 * 120.00408 * 182.45473 * 15 13 12 17 17 O 1.21346 * 119.99857 * 359.97438 * 16 15 13 18 18 C 1.49457 * 120.00228 * 180.02562 * 16 15 13 19 19 N 1.34773 * 119.99681 * 179.97438 * 18 16 15 20 20 O 1.21348 * 119.99477 * 359.97438 * 18 16 15 21 21 C 1.53777 * 87.08166 * 25.43252 * 13 12 10 22 22 H 0.97000 * 119.99951 * 0.02562 * 1 2 3 23 23 H 0.96998 * 119.99627 * 0.27798 * 9 7 2 24 24 H 1.09003 * 113.61420 * 203.66652 * 12 10 9 25 25 H 1.09002 * 113.61962 * 334.56354 * 12 10 9 26 26 H 0.97005 * 119.99744 * 2.44841 * 15 13 12 27 27 H 0.96994 * 120.00767 * 359.97438 * 19 18 16 28 28 H 0.97004 * 119.99281 * 179.97438 * 19 18 16 29 29 H 1.08999 * 113.61229 * 220.01922 * 21 13 12 30 30 H 1.08995 * 113.69573 * 89.12715 * 21 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 3.7103 1.3462 0.0006 5 1 1.8916 2.3963 -1.2125 6 1 1.8915 2.3963 1.2125 7 6 2.0102 -1.2023 0.0005 8 1 3.0902 -1.2023 0.0010 9 7 1.3255 -2.3882 0.0005 10 6 2.0579 -3.6569 0.0005 11 1 3.0489 -3.5735 -0.4457 12 6 2.0514 -4.3719 1.3619 13 6 0.7538 -5.0597 0.9061 14 1 0.6911 -6.1098 1.1916 15 7 -0.4579 -4.3065 1.2388 16 6 -1.6702 -4.8152 0.9426 17 8 -1.7582 -5.8970 0.4000 18 6 -2.9063 -4.0465 1.2816 19 7 -4.1187 -4.5551 0.9849 20 8 -2.8183 -2.9645 1.8239 21 6 1.2380 -4.8416 -0.5371 22 1 -0.4850 0.8400 -0.0004 23 1 0.3555 -2.3881 -0.0039 24 1 2.8859 -5.0600 1.4977 25 1 1.9147 -3.6986 2.2082 26 1 -0.3875 -3.4416 1.6724 27 1 -4.1890 -5.4197 0.5512 28 1 -4.9209 -4.0563 1.2053 29 1 0.4444 -4.5474 -1.2241 30 1 1.8500 -5.6573 -0.9219 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001022633124.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:23:53 Heat of formation + Delta-G solvation = -62.911702 kcal Electronic energy + Delta-G solvation = -15947.500029 eV Core-core repulsion = 13163.829329 eV Total energy + Delta-G solvation = -2783.670701 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.76442 -40.23002 -38.93012 -35.61870 -34.87817 -33.92718 -31.80238 -27.10176 -26.49268 -25.92277 -23.77072 -21.41878 -20.42355 -19.56970 -19.20224 -18.07880 -17.27784 -16.86639 -16.69186 -16.34145 -16.05563 -15.41308 -15.03183 -14.81247 -14.61027 -13.51803 -13.28377 -13.11050 -12.84211 -12.81259 -12.52895 -12.08817 -11.93352 -11.70654 -11.11139 -10.92461 -10.88574 -10.73986 -10.08032 -9.00893 -7.92873 -5.22957 0.36324 1.48034 1.48650 1.52023 1.58827 2.16922 2.56182 2.89108 3.38938 3.60919 3.67100 3.79419 3.97677 4.27091 4.38877 4.78266 4.90745 5.00026 5.04819 5.25767 5.31927 5.45231 5.56400 5.66451 5.96202 6.28506 6.32054 6.79675 7.06674 7.34195 8.10936 8.32518 9.29343 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.025947 B = 0.008887 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.882807 B = 3149.743802 C = 4001.942787 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.965 5.965 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.263 1.263 5 H -0.297 1.297 6 H -0.297 1.297 7 C -0.243 4.243 8 H 0.082 0.918 9 N -0.723 5.723 10 C 0.140 3.860 11 H 0.070 0.930 12 C -0.158 4.158 13 C 0.121 3.879 14 H 0.108 0.892 15 N -0.674 5.674 16 C 0.506 3.494 17 O -0.540 6.540 18 C 0.507 3.493 19 N -0.798 5.798 20 O -0.549 6.549 21 C -0.155 4.155 22 H 0.249 0.751 23 H 0.374 0.626 24 H 0.127 0.873 25 H 0.058 0.942 26 H 0.412 0.588 27 H 0.423 0.577 28 H 0.421 0.579 29 H 0.042 0.958 30 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.302 -12.675 2.257 13.078 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.615 5.615 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.187 1.187 5 H -0.225 1.225 6 H -0.224 1.224 7 C -0.375 4.375 8 H 0.099 0.901 9 N -0.362 5.362 10 C 0.030 3.970 11 H 0.088 0.912 12 C -0.199 4.199 13 C 0.017 3.983 14 H 0.126 0.874 15 N -0.326 5.326 16 C 0.286 3.714 17 O -0.418 6.418 18 C 0.285 3.715 19 N -0.366 5.366 20 O -0.426 6.426 21 C -0.194 4.194 22 H 0.058 0.942 23 H 0.207 0.793 24 H 0.145 0.855 25 H 0.076 0.924 26 H 0.249 0.751 27 H 0.256 0.744 28 H 0.256 0.744 29 H 0.061 0.939 30 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -1.958 -12.641 2.206 12.980 hybrid contribution -0.618 1.452 0.005 1.578 sum -2.576 -11.189 2.210 11.692 Atomic orbital electron populations 1.69851 1.06585 1.25869 1.59194 1.25593 0.96313 1.01155 1.03765 0.85082 0.78399 0.79953 0.76350 1.18692 1.22452 1.22398 1.19716 0.91666 0.84960 1.41128 0.90053 1.42465 1.05476 1.00682 1.87578 1.21557 0.95434 0.84883 0.95107 0.91172 1.24027 0.96228 0.99936 0.99706 1.22047 0.83419 0.95906 0.96952 0.87390 1.45815 1.04935 1.23344 1.58518 1.20156 0.85307 0.85950 0.79945 1.90691 1.87326 1.21345 1.42450 1.20200 0.86450 0.85422 0.79446 1.43289 1.06218 1.25407 1.61655 1.90897 1.87400 1.21913 1.42401 1.23832 0.99993 0.99761 0.95824 0.94226 0.79308 0.85483 0.92353 0.75097 0.74446 0.74429 0.93922 0.85711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -59.98 13.06 21.65 0.28 -59.70 16 2 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 3 Si 0.97 46.43 29.55 68.60 2.03 48.45 16 4 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 5 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 6 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 7 C -0.24 -13.29 9.97 84.04 0.84 -12.45 16 8 H 0.08 4.22 7.83 -2.91 -0.02 4.20 16 9 N -0.72 -35.70 5.01 -320.46 -1.61 -37.31 16 10 C 0.14 5.22 4.55 45.51 0.21 5.43 16 11 H 0.07 2.52 8.11 -2.39 -0.02 2.51 16 12 C -0.16 -4.74 7.57 31.11 0.24 -4.51 16 13 C 0.12 3.69 4.00 45.51 0.18 3.87 16 14 H 0.11 2.86 8.05 -2.39 -0.02 2.84 16 15 N -0.67 -23.91 4.32 -441.38 -1.91 -25.82 16 16 C 0.51 17.32 7.89 87.27 0.69 18.01 16 17 O -0.54 -18.47 16.42 -3.23 -0.05 -18.52 16 18 C 0.51 16.64 8.16 87.27 0.71 17.35 16 19 N -0.80 -17.25 8.87 -174.50 -1.55 -18.80 16 20 O -0.55 -22.81 17.31 -3.24 -0.06 -22.87 16 21 C -0.15 -4.91 7.62 31.12 0.24 -4.68 16 22 H 0.25 15.16 8.31 -92.71 -0.77 14.38 16 23 H 0.37 20.08 6.38 -92.71 -0.59 19.48 16 24 H 0.13 2.80 8.14 -2.39 -0.02 2.78 16 25 H 0.06 1.99 8.13 -2.39 -0.02 1.97 16 26 H 0.41 16.66 7.30 -92.70 -0.68 15.98 16 27 H 0.42 7.26 8.30 -92.71 -0.77 6.49 16 28 H 0.42 7.17 8.93 -92.71 -0.83 6.34 16 29 H 0.04 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.12 3.03 8.14 -2.39 -0.02 3.01 16 Total: -1.00 -70.99 266.90 -0.95 -71.94 By element: Atomic # 1 Polarization: 45.14 SS G_CDS: -1.65 Total: 43.48 kcal Atomic # 6 Polarization: 15.57 SS G_CDS: 3.57 Total: 19.14 kcal Atomic # 7 Polarization: -136.85 SS G_CDS: -4.78 Total: -141.63 kcal Atomic # 8 Polarization: -41.28 SS G_CDS: -0.11 Total: -41.39 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.45 kcal Total: -70.99 -0.95 -71.94 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001022633124.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.031 kcal (2) G-P(sol) polarization free energy of solvation -70.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds