Wall clock time and date at job start Sun Mar 29 2020 22:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47549 * 239.99907 * 3 2 1 5 5 H 1.48505 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47117 * 119.99995 * 3 2 1 7 7 C 1.37880 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47231 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99725 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00315 * 179.97438 * 10 9 7 13 13 C 1.47577 * 134.49115 * 179.97438 * 12 10 9 14 14 C 1.53949 * 86.11635 * 155.36072 * 13 12 10 15 15 F 1.39899 * 113.73875 * 269.15368 * 14 13 12 16 16 C 1.52996 * 113.74506 * 137.94917 * 14 13 12 17 17 C 1.53002 * 117.49888 * 111.25392 * 16 14 13 18 18 C 1.53000 * 117.50107 * 179.91154 * 16 14 13 19 19 C 1.47579 * 134.49024 * 359.97438 * 12 10 9 20 20 H 0.97004 * 120.00110 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47851 * 59.99873 * 9 7 2 22 22 H 1.09000 * 109.46956 * 299.99705 * 9 7 2 23 23 H 1.08993 * 113.77245 * 41.06101 * 13 12 10 24 24 H 1.09005 * 113.76539 * 269.65514 * 13 12 10 25 25 H 1.09002 * 115.54951 * 325.58366 * 16 14 13 26 26 H 1.09000 * 117.49996 * 215.00804 * 17 16 14 27 27 H 1.08999 * 117.49664 * 0.02562 * 17 16 14 28 28 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 29 29 H 1.08999 * 117.49942 * 144.97366 * 18 16 14 30 30 H 1.08996 * 113.77244 * 90.33742 * 19 12 10 31 31 H 1.09000 * 113.77123 * 318.94090 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2301 -3.6446 -0.0015 11 8 3.4225 -3.4231 -0.0009 12 7 1.7808 -4.9154 -0.0018 13 6 2.4286 -6.2414 -0.0022 14 6 1.1284 -6.7607 0.6379 15 9 1.1397 -6.7342 2.0366 16 6 0.6547 -8.1002 0.0705 17 6 0.7249 -9.3213 0.9897 18 6 -0.6303 -8.6972 0.6479 19 6 0.4435 -5.5395 -0.0021 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5564 -0.8919 22 1 0.6240 -2.5574 0.8880 23 1 3.2972 -6.3062 0.6529 24 1 2.6161 -6.6384 -1.0000 25 1 0.8501 -8.2569 -0.9903 26 1 0.9667 -10.2814 0.5337 27 1 1.1083 -9.1702 1.9988 28 1 -1.1379 -8.1358 1.4324 29 1 -1.2805 -9.2463 -0.0332 30 1 0.0479 -5.7303 -0.9996 31 1 -0.2727 -5.0439 0.6533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143189297.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:43 Heat of formation + Delta-G solvation = -27.207606 kcal Electronic energy + Delta-G solvation = -15531.836413 eV Core-core repulsion = 12729.793996 eV Total energy + Delta-G solvation = -2802.042417 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.72361 -39.43625 -37.47872 -36.15452 -32.92957 -29.85468 -28.10792 -26.26958 -24.07867 -22.52421 -22.50550 -20.09818 -18.52951 -16.77836 -16.52624 -16.07110 -15.53996 -15.32600 -14.72501 -14.61609 -14.00749 -13.94761 -13.17287 -12.80231 -12.62405 -12.15453 -11.93645 -11.71667 -11.31226 -11.25433 -11.16544 -10.79938 -10.60805 -10.48954 -9.99497 -9.95158 -9.28633 -8.69193 -8.43823 -8.26466 -6.05798 -4.05773 3.22867 3.36509 3.38115 3.39865 3.46802 3.61432 4.10028 4.21104 4.45888 4.50002 4.58086 4.84709 4.94032 5.28029 5.33076 5.38247 5.44928 5.51086 5.62279 5.64550 5.81251 5.85196 5.93451 6.16486 6.56364 7.18352 7.31847 7.96077 8.06761 8.38560 9.03950 9.14766 9.59012 11.06562 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.059395 B = 0.005627 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.308302 B = 4974.982141 C = 5208.091485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.904 3.096 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.511 4.511 8 H 0.074 0.926 9 C 0.014 3.986 10 C 0.541 3.459 11 O -0.539 6.539 12 N -0.656 5.656 13 C 0.091 3.909 14 C 0.110 3.890 15 F -0.181 7.181 16 C -0.171 4.171 17 C -0.171 4.171 18 C -0.169 4.169 19 C 0.097 3.903 20 H 0.262 0.738 21 H 0.048 0.952 22 H 0.048 0.952 23 H 0.086 0.914 24 H 0.093 0.907 25 H 0.126 0.874 26 H 0.098 0.902 27 H 0.100 0.900 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.098 0.902 31 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.788 -17.827 -0.452 18.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.731 3.269 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.549 4.549 8 H 0.093 0.907 9 C -0.025 4.025 10 C 0.335 3.665 11 O -0.415 6.415 12 N -0.396 5.396 13 C -0.033 4.033 14 C 0.090 3.910 15 F -0.161 7.161 16 C -0.190 4.190 17 C -0.208 4.208 18 C -0.206 4.206 19 C -0.027 4.027 20 H 0.072 0.928 21 H 0.065 0.935 22 H 0.066 0.934 23 H 0.105 0.895 24 H 0.111 0.889 25 H 0.144 0.856 26 H 0.116 0.884 27 H 0.119 0.881 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.116 0.884 31 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -2.192 -17.304 -0.407 17.447 hybrid contribution 0.307 0.836 0.046 0.892 sum -1.885 -16.468 -0.361 16.579 Atomic orbital electron populations 1.69953 1.06052 1.27066 1.50951 1.25005 0.94931 0.99485 0.95099 0.86456 0.79369 0.82135 0.78899 1.20090 1.21298 1.20078 1.21132 0.94233 0.89071 1.50478 0.90740 1.19193 0.93980 0.89889 0.99450 1.21899 0.90867 0.81222 0.72497 1.90550 1.18099 1.83243 1.49573 1.50310 1.07869 1.04449 1.76958 1.23568 0.96202 0.82624 1.00890 1.21825 0.98465 0.94118 0.76552 1.92853 1.97134 1.97287 1.28844 1.22661 1.03889 0.92513 0.99901 1.22981 1.00756 0.96243 1.00863 1.22974 0.90589 1.03480 1.03570 1.23607 0.88376 0.89265 1.01429 0.92808 0.93455 0.93444 0.89549 0.88854 0.85632 0.88403 0.88142 0.88266 0.88249 0.88365 0.88806 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 13.29 55.43 0.74 -26.00 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 22.45 29.54 -169.99 -5.02 17.43 16 4 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 7 C -0.51 -15.23 8.92 -34.44 -0.31 -15.54 16 8 H 0.07 2.31 6.75 -52.49 -0.35 1.95 16 9 C 0.01 0.37 5.21 -29.04 -0.15 0.22 16 10 C 0.54 13.21 8.05 -10.98 -0.09 13.12 16 11 O -0.54 -14.93 16.19 5.56 0.09 -14.84 16 12 N -0.66 -12.35 3.61 -178.33 -0.64 -13.00 16 13 C 0.09 1.32 8.30 -2.98 -0.02 1.29 16 14 C 0.11 1.40 1.97 -89.69 -0.18 1.22 16 15 F -0.18 -2.74 16.25 2.25 0.04 -2.71 16 16 C -0.17 -1.57 5.43 -90.62 -0.49 -2.06 16 17 C -0.17 -1.45 10.00 -26.69 -0.27 -1.72 16 18 C -0.17 -1.40 10.16 -26.70 -0.27 -1.67 16 19 C 0.10 1.38 8.08 -2.97 -0.02 1.35 16 20 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 21 H 0.05 1.26 8.14 -51.93 -0.42 0.83 16 22 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 23 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.09 1.10 8.10 -51.93 -0.42 0.68 16 25 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 26 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.10 0.95 7.58 -51.93 -0.39 0.56 16 28 H 0.10 0.90 8.14 -51.92 -0.42 0.48 16 29 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 31 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 LS Contribution 275.74 15.07 4.16 4.16 Total: -1.00 -33.92 275.74 -6.65 -40.57 By element: Atomic # 1 Polarization: 0.75 SS G_CDS: -4.11 Total: -3.35 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -1.90 Total: -2.26 kcal Atomic # 7 Polarization: -39.09 SS G_CDS: 0.09 Total: -38.99 kcal Atomic # 8 Polarization: -14.93 SS G_CDS: 0.09 Total: -14.84 kcal Atomic # 9 Polarization: -2.74 SS G_CDS: 0.04 Total: -2.71 kcal Atomic # 14 Polarization: 22.45 SS G_CDS: -5.02 Total: 17.43 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -33.92 -6.65 -40.57 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189297.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.359 kcal (2) G-P(sol) polarization free energy of solvation -33.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds