Wall clock time and date at job start Sun Mar 29 2020 22:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86793 * 120.00220 * 2 1 4 4 H 1.48499 * 109.47549 * 239.99907 * 3 2 1 5 5 H 1.48505 * 109.47238 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47117 * 119.99995 * 3 2 1 7 7 C 1.37880 * 119.99670 * 180.02562 * 2 1 3 8 8 H 1.08001 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.50700 * 109.47231 * 180.02562 * 9 7 2 11 11 O 1.21280 * 119.99725 * 359.97438 * 10 9 7 12 12 N 1.34781 * 120.00315 * 179.97438 * 10 9 7 13 13 C 1.47577 * 134.49115 * 179.97438 * 12 10 9 14 14 C 1.53949 * 86.11635 * 155.36072 * 13 12 10 15 15 F 1.39899 * 113.73875 * 269.15368 * 14 13 12 16 16 C 1.52996 * 113.74506 * 137.94917 * 14 13 12 17 17 C 1.53002 * 117.49888 * 111.25392 * 16 14 13 18 18 C 1.53000 * 117.50107 * 179.91154 * 16 14 13 19 19 C 1.47579 * 134.49024 * 359.97438 * 12 10 9 20 20 H 0.97004 * 120.00110 * 359.97438 * 1 2 3 21 21 H 1.08999 * 109.47851 * 59.99873 * 9 7 2 22 22 H 1.09000 * 109.46956 * 299.99705 * 9 7 2 23 23 H 1.08993 * 113.77245 * 41.06101 * 13 12 10 24 24 H 1.09005 * 113.76539 * 269.65514 * 13 12 10 25 25 H 1.09002 * 115.54951 * 325.58366 * 16 14 13 26 26 H 1.09000 * 117.49996 * 215.00804 * 17 16 14 27 27 H 1.08999 * 117.49664 * 0.02562 * 17 16 14 28 28 H 1.09008 * 117.49673 * 359.97438 * 18 16 14 29 29 H 1.08999 * 117.49942 * 144.97366 * 18 16 14 30 30 H 1.08996 * 113.77244 * 90.33742 * 19 12 10 31 31 H 1.09000 * 113.77123 * 318.94090 * 19 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6964 -1.2124 5 1 1.2842 2.7465 0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4991 -0.0017 10 6 2.2301 -3.6446 -0.0015 11 8 3.4225 -3.4231 -0.0009 12 7 1.7808 -4.9154 -0.0018 13 6 2.4286 -6.2414 -0.0022 14 6 1.1284 -6.7607 0.6379 15 9 1.1397 -6.7342 2.0366 16 6 0.6547 -8.1002 0.0705 17 6 0.7249 -9.3213 0.9897 18 6 -0.6303 -8.6972 0.6479 19 6 0.4435 -5.5395 -0.0021 20 1 -0.4850 0.8401 0.0004 21 1 0.6246 -2.5564 -0.8919 22 1 0.6240 -2.5574 0.8880 23 1 3.2972 -6.3062 0.6529 24 1 2.6161 -6.6384 -1.0000 25 1 0.8501 -8.2569 -0.9903 26 1 0.9667 -10.2814 0.5337 27 1 1.1083 -9.1702 1.9988 28 1 -1.1379 -8.1358 1.4324 29 1 -1.2805 -9.2463 -0.0332 30 1 0.0479 -5.7303 -0.9996 31 1 -0.2727 -5.0439 0.6533 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143189297.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:16:43 Heat of formation + Delta-G solvation = -49.276374 kcal Electronic energy + Delta-G solvation = -15532.793386 eV Core-core repulsion = 12729.793996 eV Total energy + Delta-G solvation = -2802.999390 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -48.87401 -40.93233 -38.87175 -37.22945 -35.15549 -31.73108 -29.81768 -27.51045 -25.82677 -23.98336 -23.14706 -21.08712 -20.07040 -18.65382 -17.91596 -17.53781 -17.15567 -16.49327 -16.26126 -16.20067 -15.62326 -15.14435 -14.44204 -14.31458 -14.12143 -13.89177 -13.29329 -13.18814 -12.82319 -12.61462 -12.35368 -12.28309 -12.18871 -12.04415 -11.52325 -11.28362 -10.85520 -10.66754 -10.53879 -9.79467 -8.29207 -6.37993 1.38098 1.41687 1.50076 1.71657 1.83434 2.40153 2.53808 3.05331 3.05635 3.28684 3.56973 3.66976 3.98119 4.15306 4.18958 4.34037 4.38254 4.48292 4.55211 4.85083 4.86415 5.01076 5.05367 5.08212 5.17359 5.27305 5.32237 5.68110 6.00940 6.57709 6.75639 7.25757 7.34524 8.82943 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.059395 B = 0.005627 C = 0.005375 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 471.308302 B = 4974.982141 C = 5208.091485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.012 3.988 3 Si 0.968 3.032 4 H -0.270 1.270 5 H -0.270 1.270 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.054 0.946 9 C 0.020 3.980 10 C 0.539 3.461 11 O -0.586 6.586 12 N -0.664 5.664 13 C 0.087 3.913 14 C 0.120 3.880 15 F -0.199 7.199 16 C -0.170 4.170 17 C -0.170 4.170 18 C -0.165 4.165 19 C 0.092 3.908 20 H 0.269 0.731 21 H 0.043 0.957 22 H 0.034 0.966 23 H 0.074 0.926 24 H 0.131 0.869 25 H 0.154 0.846 26 H 0.121 0.879 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.123 0.877 30 H 0.136 0.864 31 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.383 -19.184 -1.374 19.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.187 4.187 3 Si 0.792 3.208 4 H -0.195 1.195 5 H -0.195 1.195 6 H -0.198 1.198 7 C -0.582 4.582 8 H 0.072 0.928 9 C -0.019 4.019 10 C 0.332 3.668 11 O -0.466 6.466 12 N -0.400 5.400 13 C -0.035 4.035 14 C 0.101 3.899 15 F -0.179 7.179 16 C -0.188 4.188 17 C -0.207 4.207 18 C -0.201 4.201 19 C -0.030 4.030 20 H 0.078 0.922 21 H 0.061 0.939 22 H 0.052 0.948 23 H 0.093 0.907 24 H 0.149 0.851 25 H 0.172 0.828 26 H 0.139 0.861 27 H 0.103 0.897 28 H 0.105 0.895 29 H 0.141 0.859 30 H 0.153 0.847 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.837 -18.726 -1.324 18.986 hybrid contribution 0.422 1.160 0.365 1.287 sum -2.415 -17.566 -0.960 17.757 Atomic orbital electron populations 1.70026 1.07187 1.28353 1.50675 1.25825 0.95918 1.02839 0.94140 0.85456 0.78362 0.77974 0.78972 1.19523 1.19506 1.19849 1.21330 0.93655 0.91209 1.51977 0.92762 1.18970 0.94009 0.90510 0.98444 1.21289 0.89626 0.82926 0.72975 1.90507 1.19331 1.84578 1.52147 1.50227 1.11108 1.04187 1.74527 1.23972 0.96639 0.79821 1.03044 1.21811 0.96859 0.95792 0.75455 1.92826 1.97098 1.97471 1.30519 1.22642 1.04768 0.90284 1.01144 1.23059 1.00741 0.96837 1.00075 1.23067 0.90582 1.03043 1.03448 1.24037 0.86387 0.89019 1.03602 0.92197 0.93931 0.94771 0.90716 0.85083 0.82815 0.86113 0.89717 0.89535 0.85893 0.84659 0.89630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -55.04 13.29 21.45 0.28 -54.75 16 2 C 0.01 0.69 5.46 84.66 0.46 1.15 16 3 Si 0.97 46.19 29.54 68.60 2.03 48.22 16 4 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 5 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 6 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 7 C -0.54 -33.40 8.92 25.60 0.23 -33.17 16 8 H 0.05 3.50 6.75 -2.91 -0.02 3.48 16 9 C 0.02 1.10 5.21 29.10 0.15 1.25 16 10 C 0.54 27.05 8.05 87.66 0.71 27.75 16 11 O -0.59 -33.60 16.19 -3.03 -0.05 -33.65 16 12 N -0.66 -24.79 3.61 -836.49 -3.02 -27.80 16 13 C 0.09 2.40 8.30 86.48 0.72 3.11 16 14 C 0.12 2.83 1.97 -10.13 -0.02 2.81 16 15 F -0.20 -5.92 16.25 44.97 0.73 -5.19 16 16 C -0.17 -2.52 5.43 -10.79 -0.06 -2.58 16 17 C -0.17 -2.36 10.00 30.62 0.31 -2.05 16 18 C -0.16 -2.20 10.16 30.62 0.31 -1.89 16 19 C 0.09 2.46 8.08 86.48 0.70 3.16 16 20 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 21 H 0.04 2.33 8.14 -2.39 -0.02 2.31 16 22 H 0.03 1.93 8.14 -2.39 -0.02 1.91 16 23 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 24 H 0.13 2.66 8.10 -2.38 -0.02 2.64 16 25 H 0.15 1.49 8.14 -2.39 -0.02 1.47 16 26 H 0.12 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.08 1.46 7.58 -2.39 -0.02 1.45 16 28 H 0.09 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.12 1.10 8.14 -2.39 -0.02 1.09 16 30 H 0.14 2.67 8.10 -2.39 -0.02 2.65 16 31 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -75.32 275.74 4.60 -70.72 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: 1.12 Total: 2.92 kcal Atomic # 6 Polarization: -3.96 SS G_CDS: 3.50 Total: -0.46 kcal Atomic # 7 Polarization: -79.82 SS G_CDS: -2.73 Total: -82.55 kcal Atomic # 8 Polarization: -33.60 SS G_CDS: -0.05 Total: -33.65 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.73 Total: -5.19 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.22 kcal Total: -75.32 4.60 -70.72 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143189297.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.442 kcal (2) G-P(sol) polarization free energy of solvation -75.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.718 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds