Wall clock time and date at job start Sun Mar 29 2020 21:34:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50695 * 109.47361 * 2 1 4 4 C 1.38170 * 120.82935 * 265.27120 * 3 2 1 5 5 N 1.32524 * 119.21702 * 180.25270 * 4 3 2 6 6 C 1.31953 * 121.00309 * 359.74617 * 5 4 3 7 7 Cl 1.73607 * 119.09008 * 180.02562 * 6 5 4 8 8 N 1.31829 * 121.81443 * 359.97438 * 6 5 4 9 9 C 1.33054 * 120.67295 * 0.02562 * 8 6 5 10 10 N 1.38525 * 120.52931 * 179.97438 * 9 8 6 11 11 C 1.36938 * 119.99657 * 359.97438 * 10 9 8 12 12 H 1.07999 * 120.00325 * 359.97438 * 11 10 9 13 13 C 1.38855 * 119.99426 * 180.02562 * 11 10 9 14 14 N 1.31531 * 120.00243 * 359.71848 * 13 11 10 15 15 Si 1.86803 * 119.99568 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.47085 * 89.99634 * 15 13 11 17 17 H 1.48497 * 109.46789 * 209.99643 * 15 13 11 18 18 H 1.48490 * 109.47245 * 329.99792 * 15 13 11 19 19 H 1.09002 * 109.47280 * 59.99617 * 1 2 3 20 20 H 1.09004 * 109.47365 * 179.97438 * 1 2 3 21 21 H 1.08999 * 109.47103 * 299.99679 * 1 2 3 22 22 H 1.09006 * 109.46825 * 240.00044 * 2 1 3 23 23 H 1.09001 * 109.47143 * 120.00919 * 2 1 3 24 24 H 1.08001 * 120.39512 * 359.97438 * 4 3 2 25 25 H 0.96999 * 120.00012 * 179.97438 * 10 9 8 26 26 H 0.97000 * 119.99632 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4207 0.0000 4 6 2.3606 2.0557 -1.1824 5 7 2.8041 3.3040 -1.1448 6 6 2.9307 3.9461 0.0009 7 17 3.5159 5.5805 -0.0077 8 7 2.6241 3.3810 1.1518 9 6 2.1724 2.1303 1.1949 10 7 1.8516 1.5392 2.4059 11 6 1.9989 2.2428 3.5714 12 1 2.3657 3.2584 3.5465 13 6 1.6779 1.6502 4.7854 14 7 1.2269 0.4149 4.8154 15 14 1.8796 2.6097 6.3754 16 1 0.6198 3.3348 6.6792 17 1 2.1903 1.6714 7.4837 18 1 2.9890 3.5856 6.2273 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 -0.3633 0.5138 0.8900 22 1 1.8933 -0.5139 -0.8901 23 1 1.8933 -0.5140 0.8899 24 1 2.2613 1.5394 -2.1258 25 1 1.5225 0.6270 2.4283 26 1 1.0023 0.0011 5.6634 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163182063.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:34:53 Heat of formation + Delta-G solvation = 12.637984 kcal Electronic energy + Delta-G solvation = -13352.733093 eV Core-core repulsion = 10877.214543 eV Total energy + Delta-G solvation = -2475.518550 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.61132 -38.01886 -37.34907 -35.41428 -34.43134 -32.52434 -30.20213 -27.13492 -25.46826 -23.96492 -22.43872 -20.27815 -19.16158 -17.96308 -16.66637 -16.17570 -16.08837 -15.63927 -15.41260 -14.66574 -14.33050 -13.82728 -13.54454 -13.43114 -12.84538 -12.69844 -12.54958 -12.31225 -12.29287 -12.12991 -11.87452 -11.30765 -11.17991 -10.41395 -9.85519 -9.19783 -8.62122 -5.91015 0.22273 0.61632 0.65865 1.40464 1.45688 1.53145 2.21048 2.78633 2.91662 3.25709 3.75331 4.04281 4.13366 4.20875 4.48703 4.57451 4.81598 4.92865 5.09772 5.29077 5.34675 5.39987 5.51514 5.85399 6.24988 6.70196 7.17314 7.19166 7.67602 8.53765 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.021865 B = 0.010384 C = 0.007208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1280.266468 B = 2695.704350 C = 3883.796863 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.055 4.055 3 C -0.283 4.283 4 C 0.180 3.820 5 N -0.600 5.600 6 C 0.389 3.611 7 Cl 0.001 6.999 8 N -0.603 5.603 9 C 0.371 3.629 10 N -0.519 5.519 11 C -0.317 4.317 12 H 0.100 0.900 13 C -0.014 4.014 14 N -0.911 5.911 15 Si 0.998 3.002 16 H -0.270 1.270 17 H -0.272 1.272 18 H -0.267 1.267 19 H 0.064 0.936 20 H 0.076 0.924 21 H 0.023 0.977 22 H 0.104 0.896 23 H 0.050 0.950 24 H 0.201 0.799 25 H 0.411 0.589 26 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.042 -0.359 -7.224 7.233 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.093 4.093 3 C -0.296 4.296 4 C 0.023 3.977 5 N -0.328 5.328 6 C 0.091 3.909 7 Cl 0.029 6.971 8 N -0.335 5.335 9 C 0.123 3.877 10 N -0.129 5.129 11 C -0.448 4.448 12 H 0.118 0.882 13 C -0.216 4.216 14 N -0.549 5.549 15 Si 0.821 3.179 16 H -0.196 1.196 17 H -0.196 1.196 18 H -0.192 1.192 19 H 0.083 0.917 20 H 0.095 0.905 21 H 0.042 0.958 22 H 0.123 0.877 23 H 0.068 0.932 24 H 0.218 0.782 25 H 0.249 0.751 26 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.318 0.527 -6.766 6.794 hybrid contribution -0.288 -0.495 1.100 1.240 sum 0.030 0.032 -5.666 5.666 Atomic orbital electron populations 1.21716 0.94765 1.02270 1.01077 1.20138 0.96000 0.90062 1.03111 1.20897 1.15069 1.00826 0.92843 1.22998 0.88632 0.88032 0.98015 1.67823 1.25850 1.11486 1.27639 1.22501 0.93460 0.89440 0.85493 1.98339 1.85885 1.14423 1.98470 1.67095 1.23963 1.12635 1.29772 1.18412 0.93884 0.88180 0.87206 1.40973 1.55154 1.14536 1.02202 1.20061 1.41668 0.99296 0.83750 0.88223 1.26192 0.95841 0.96975 1.02549 1.69707 1.42414 1.13450 1.29338 0.84828 0.79017 0.77805 0.76240 1.19570 1.19647 1.19174 0.91667 0.90545 0.95753 0.87746 0.93181 0.78242 0.75055 0.90799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.92 9.89 71.98 0.71 -3.21 15 2 C -0.05 -1.61 5.57 29.85 0.17 -1.44 15 3 C -0.28 -10.46 5.19 -19.54 -0.10 -10.57 15 4 C 0.18 6.03 10.98 84.57 0.93 6.96 15 5 N -0.60 -23.38 10.40 -190.96 -1.99 -25.36 15 6 C 0.39 16.62 8.18 180.83 1.48 18.10 15 7 Cl 0.00 0.05 29.27 -2.72 -0.08 -0.03 15 8 N -0.60 -28.94 9.21 -188.24 -1.73 -30.67 15 9 C 0.37 17.17 7.45 133.16 0.99 18.16 15 10 N -0.52 -25.68 5.34 -188.67 -1.01 -26.68 15 11 C -0.32 -16.81 9.72 84.04 0.82 -15.99 15 12 H 0.10 5.50 7.11 -2.91 -0.02 5.48 15 13 C -0.01 -0.69 5.50 84.89 0.47 -0.22 15 14 N -0.91 -47.00 13.05 21.65 0.28 -46.72 15 15 Si 1.00 40.77 29.55 68.60 2.03 42.80 15 16 H -0.27 -10.79 7.11 99.48 0.71 -10.08 15 17 H -0.27 -10.60 7.11 99.48 0.71 -9.89 15 18 H -0.27 -10.90 7.11 99.48 0.71 -10.19 15 19 H 0.06 1.62 8.14 -2.39 -0.02 1.61 15 20 H 0.08 1.76 8.14 -2.38 -0.02 1.74 15 21 H 0.02 0.81 8.14 -2.39 -0.02 0.79 15 22 H 0.10 2.30 8.07 -2.38 -0.02 2.29 15 23 H 0.05 1.64 6.94 -2.39 -0.02 1.62 15 24 H 0.20 4.67 8.06 -2.91 -0.02 4.65 15 25 H 0.41 19.82 6.14 -92.71 -0.57 19.25 15 26 H 0.28 13.62 8.31 -92.71 -0.77 12.85 15 Total: -1.00 -58.37 249.67 3.61 -54.76 By element: Atomic # 1 Polarization: 19.47 SS G_CDS: 0.64 Total: 20.11 kcal Atomic # 6 Polarization: 6.34 SS G_CDS: 5.46 Total: 11.80 kcal Atomic # 7 Polarization: -125.00 SS G_CDS: -4.45 Total: -129.44 kcal Atomic # 14 Polarization: 40.77 SS G_CDS: 2.03 Total: 42.80 kcal Atomic # 17 Polarization: 0.05 SS G_CDS: -0.08 Total: -0.03 kcal Total: -58.37 3.61 -54.76 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163182063.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.398 kcal (2) G-P(sol) polarization free energy of solvation -58.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.760 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds