Wall clock time and date at job start Sun Mar 29 2020 21:44:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.43205 * 179.97438 * 2 1 4 4 C 1.39410 * 119.78414 * 260.28044 * 3 2 1 5 5 C 1.38776 * 119.99136 * 179.77019 * 4 3 2 6 6 N 1.37835 * 133.21195 * 180.17212 * 5 4 3 7 7 H 0.96996 * 125.07765 * 0.34539 * 6 5 4 8 8 C 1.36660 * 109.83891 * 180.29969 * 6 5 4 9 9 C 1.34501 * 109.91445 * 0.02562 * 8 6 5 10 10 C 1.40743 * 119.65343 * 0.50161 * 5 4 3 11 11 C 1.40616 * 120.13548 * 359.75241 * 10 5 4 12 12 N 1.39025 * 120.16613 * 180.02562 * 11 10 5 13 13 C 1.36820 * 119.99669 * 179.97438 * 12 11 10 14 14 H 1.07997 * 120.00567 * 359.97438 * 13 12 11 15 15 C 1.38747 * 119.99598 * 179.97438 * 13 12 11 16 16 N 1.31619 * 119.99902 * 359.97438 * 15 13 12 17 17 Si 1.86792 * 119.99806 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.47417 * 89.99878 * 17 15 13 19 19 H 1.48501 * 109.47028 * 209.99767 * 17 15 13 20 20 H 1.48500 * 109.47309 * 329.99877 * 17 15 13 21 21 C 1.38226 * 119.66547 * 359.97438 * 11 10 5 22 22 H 1.07998 * 120.00109 * 359.97438 * 4 3 2 23 23 H 1.08000 * 125.03969 * 179.97438 * 8 6 5 24 24 H 1.08004 * 126.48101 * 179.97438 * 9 8 6 25 25 H 0.96997 * 119.99930 * 359.97311 * 12 11 10 26 26 H 0.96998 * 119.99814 * 180.02562 * 16 15 13 27 27 H 1.08001 * 119.93483 * 180.02562 * 21 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2604 0.2052 1.1926 5 6 4.6481 0.2019 1.1983 6 7 5.5882 0.3683 2.1926 7 1 5.3878 0.5235 3.1288 8 6 6.8446 0.2810 1.6622 9 6 6.7684 0.0608 0.3375 10 6 5.3490 0.0019 -0.0057 11 6 4.6459 -0.1986 -1.2068 12 7 5.3376 -0.3968 -2.3964 13 6 4.6500 -0.5921 -3.5631 14 1 3.5701 -0.5928 -3.5599 15 6 5.3403 -0.7893 -4.7504 16 7 6.6565 -0.7880 -4.7544 17 14 4.4017 -1.0567 -6.3430 18 1 4.1508 0.2533 -6.9958 19 1 5.2024 -1.9168 -7.2510 20 1 3.1057 -1.7193 -6.0486 21 6 3.2637 -0.1988 -1.1987 22 1 2.7168 0.3629 2.1124 23 1 7.7625 0.3756 2.2234 24 1 7.5991 -0.0514 -0.3436 25 1 6.3076 -0.3965 -2.3993 26 1 7.1391 -0.9255 -5.5845 27 1 2.7193 -0.3529 -2.1186 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163187485.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:49 Heat of formation + Delta-G solvation = 69.795831 kcal Electronic energy + Delta-G solvation = -14244.567351 eV Core-core repulsion = 11773.960201 eV Total energy + Delta-G solvation = -2470.607151 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.82596 -38.78128 -37.70647 -35.90166 -33.83715 -31.56691 -30.17507 -28.96802 -26.58798 -24.11638 -22.85753 -21.20478 -19.98272 -19.34715 -18.14823 -16.90461 -16.61587 -15.96037 -15.64112 -15.35347 -14.82204 -14.76084 -14.50540 -13.99172 -13.54405 -13.52910 -13.49713 -13.29663 -12.78707 -12.68451 -12.16141 -11.93766 -11.80990 -11.50948 -10.69609 -9.64920 -8.99589 -8.46351 -7.97793 -5.66340 0.09961 0.91797 1.44453 1.49173 1.55590 1.70496 1.85886 2.28823 2.33298 2.46386 2.99527 3.17006 3.47306 3.51044 4.24096 4.44199 4.52643 4.65636 4.80670 4.96783 5.23960 5.28374 5.32771 5.67394 5.71801 5.79744 5.98974 6.03512 6.42054 6.55779 6.85427 7.03296 7.53090 7.66868 8.71521 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.022113 B = 0.009051 C = 0.006437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.920771 B = 3092.876811 C = 4348.954872 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C 0.293 3.707 3 C 0.043 3.957 4 C -0.183 4.183 5 C 0.134 3.866 6 N -0.576 5.576 7 H 0.432 0.568 8 C 0.052 3.948 9 C -0.224 4.224 10 C -0.191 4.191 11 C 0.233 3.767 12 N -0.567 5.567 13 C -0.317 4.317 14 H 0.103 0.897 15 C -0.025 4.025 16 N -0.924 5.924 17 Si 0.992 3.008 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.264 1.264 21 C -0.246 4.246 22 H 0.140 0.860 23 H 0.211 0.789 24 H 0.133 0.867 25 H 0.396 0.604 26 H 0.275 0.725 27 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.033 1.908 11.514 11.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.150 5.150 2 C -0.021 4.021 3 C 0.037 3.963 4 C -0.210 4.210 5 C 0.023 3.977 6 N -0.181 5.181 7 H 0.271 0.729 8 C -0.076 4.076 9 C -0.249 4.249 10 C -0.201 4.201 11 C 0.112 3.888 12 N -0.170 5.170 13 C -0.447 4.447 14 H 0.121 0.879 15 C -0.224 4.224 16 N -0.563 5.563 17 Si 0.816 3.184 18 H -0.199 1.199 19 H -0.205 1.205 20 H -0.189 1.189 21 C -0.276 4.276 22 H 0.158 0.842 23 H 0.228 0.772 24 H 0.151 0.849 25 H 0.230 0.770 26 H 0.085 0.915 27 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.413 1.845 11.172 11.331 hybrid contribution 0.530 -0.143 -0.913 1.066 sum 0.943 1.702 10.259 10.442 Atomic orbital electron populations 1.81133 1.12837 1.11286 1.09720 1.25908 0.92718 0.91871 0.91564 1.15169 0.82560 1.04414 0.94158 1.19309 0.89908 1.14951 0.96866 1.17572 0.90324 1.02014 0.87749 1.41632 1.04034 1.62775 1.09617 0.72852 1.22161 0.88520 1.03447 0.93425 1.21713 0.93691 1.13060 0.96480 1.19020 0.94722 1.14337 0.92022 1.17307 0.91029 0.95326 0.85111 1.40848 1.07918 1.64276 1.03913 1.20002 0.93377 1.45920 0.85372 0.87906 1.26056 0.96497 0.97379 1.02454 1.69785 1.07216 1.49758 1.29574 0.84913 0.78050 0.78331 0.77121 1.19925 1.20463 1.18863 1.19895 0.91969 1.18851 0.96837 0.84176 0.77241 0.84862 0.77036 0.91549 0.87358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -17.84 18.54 19.00 0.35 -17.49 15 2 C 0.29 10.50 15.30 88.33 1.35 11.85 15 3 C 0.04 1.53 5.73 -21.32 -0.12 1.41 15 4 C -0.18 -5.61 9.75 22.68 0.22 -5.39 15 5 C 0.13 4.17 7.25 38.94 0.28 4.46 15 6 N -0.58 -12.70 6.07 -187.65 -1.14 -13.84 15 7 H 0.43 5.85 8.96 -92.71 -0.83 5.02 15 8 C 0.05 1.15 11.82 83.09 0.98 2.13 15 9 C -0.22 -7.16 10.83 23.47 0.25 -6.90 15 10 C -0.19 -7.27 6.27 -20.03 -0.13 -7.40 15 11 C 0.23 10.27 6.64 38.58 0.26 10.53 15 12 N -0.57 -27.99 5.43 -184.01 -1.00 -28.99 15 13 C -0.32 -16.40 9.55 84.04 0.80 -15.60 15 14 H 0.10 5.18 5.68 -2.91 -0.02 5.16 15 15 C -0.02 -1.25 5.50 84.85 0.47 -0.79 15 16 N -0.92 -49.56 13.05 21.64 0.28 -49.28 15 17 Si 0.99 41.09 29.55 68.60 2.03 43.11 15 18 H -0.27 -11.11 7.11 99.48 0.71 -10.41 15 19 H -0.28 -11.35 7.11 99.48 0.71 -10.64 15 20 H -0.26 -10.64 7.11 99.48 0.71 -9.94 15 21 C -0.25 -10.36 8.99 22.70 0.20 -10.16 15 22 H 0.14 3.39 8.06 -2.91 -0.02 3.36 15 23 H 0.21 2.55 8.06 -2.91 -0.02 2.53 15 24 H 0.13 4.26 8.06 -2.91 -0.02 4.23 15 25 H 0.40 19.95 7.69 -92.71 -0.71 19.24 15 26 H 0.28 13.94 8.31 -92.71 -0.77 13.17 15 27 H 0.11 4.80 5.93 -2.91 -0.02 4.78 15 Total: -1.00 -60.63 252.35 4.80 -55.83 By element: Atomic # 1 Polarization: 26.82 SS G_CDS: -0.30 Total: 26.52 kcal Atomic # 6 Polarization: -20.44 SS G_CDS: 4.57 Total: -15.87 kcal Atomic # 7 Polarization: -108.09 SS G_CDS: -1.50 Total: -109.60 kcal Atomic # 14 Polarization: 41.09 SS G_CDS: 2.03 Total: 43.11 kcal Total: -60.63 4.80 -55.83 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163187485.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.624 kcal (2) G-P(sol) polarization free energy of solvation -60.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds