Wall clock time and date at job start Sun Mar 29 2020 21:37:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36865 * 119.99864 * 2 1 4 4 H 1.08001 * 119.99964 * 186.74289 * 3 2 1 5 5 C 1.38770 * 119.99737 * 6.74641 * 3 2 1 6 6 N 1.31600 * 120.00188 * 6.86161 * 5 3 2 7 7 Si 1.86798 * 119.99698 * 186.86770 * 5 3 2 8 8 H 1.48491 * 109.47425 * 59.99585 * 7 5 3 9 9 H 1.48500 * 109.46798 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46773 * 299.99640 * 7 5 3 11 11 C 1.38933 * 120.00449 * 179.97438 * 2 1 3 12 12 N 1.32409 * 119.74572 * 274.74234 * 11 2 1 13 13 C 1.31909 * 121.70674 * 180.02562 * 12 11 2 14 14 C 1.38302 * 121.00206 * 359.97438 * 13 12 11 15 15 Cl 1.73606 * 120.30819 * 180.02562 * 14 13 12 16 16 C 1.38844 * 119.38512 * 359.97438 * 14 13 12 17 17 C 1.38957 * 118.43133 * 0.02562 * 16 14 13 18 18 N 1.39759 * 120.51679 * 180.02562 * 17 16 14 19 19 H 1.09003 * 109.46486 * 174.22173 * 1 2 3 20 20 H 1.08996 * 109.47208 * 294.21560 * 1 2 3 21 21 H 1.08998 * 109.46868 * 54.22219 * 1 2 3 22 22 H 0.96993 * 120.00085 * 180.02562 * 6 5 3 23 23 H 1.07999 * 119.49760 * 180.27423 * 13 12 11 24 24 H 1.08005 * 120.78574 * 180.02562 * 16 14 13 25 25 H 0.96999 * 119.99992 * 354.91887 * 18 17 16 26 26 H 0.97007 * 119.99707 * 174.93198 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1493 1.1853 0.0000 4 1 3.2237 1.1886 -0.1098 5 6 1.4625 2.3829 0.1412 6 7 0.1743 2.3750 0.4098 7 14 2.3668 4.0062 -0.0502 8 1 2.9545 4.0879 -1.4114 9 1 1.4150 5.1290 0.1457 10 1 3.4496 4.0919 0.9624 11 6 2.1597 -1.2031 0.0005 12 7 2.4059 -1.8191 1.1465 13 6 3.0624 -2.9623 1.1920 14 6 3.5218 -3.5665 0.0359 15 17 4.3832 -5.0716 0.1167 16 6 3.2867 -2.9587 -1.1901 17 6 2.5928 -1.7549 -1.2095 18 7 2.3316 -1.1058 -2.4193 19 1 -0.3632 -1.0225 -0.1035 20 1 -0.3633 0.4215 0.9372 21 1 -0.3633 0.6008 -0.8337 22 1 -0.3058 3.2120 0.5081 23 1 3.2396 -3.4361 2.1462 24 1 3.6349 -3.4108 -2.1071 25 1 2.6981 -1.4557 -3.2465 26 1 1.7841 -0.3051 -2.4318 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166799666.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:37:28 Heat of formation + Delta-G solvation = 44.905998 kcal Electronic energy + Delta-G solvation = -13506.281753 eV Core-core repulsion = 11032.162448 eV Total energy + Delta-G solvation = -2474.119304 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.052 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.14163 -37.84100 -37.02274 -35.80788 -33.46247 -31.66577 -29.48953 -28.08356 -25.58691 -23.88988 -22.67327 -19.24200 -18.47282 -18.10400 -17.67663 -16.35559 -15.89671 -15.61113 -15.54159 -14.61294 -14.25406 -14.11396 -13.64805 -13.15017 -12.88904 -12.68185 -12.48971 -12.19733 -12.11668 -12.06921 -11.94222 -10.85190 -10.44281 -10.04290 -9.19683 -8.43600 -7.80691 -5.35565 0.15801 0.55637 1.10668 1.47859 1.50106 1.56935 2.44531 2.90290 3.03388 3.21806 3.31102 3.98843 4.07540 4.25541 4.46516 4.66544 4.84355 5.09912 5.39008 5.45634 5.60120 5.75805 6.24044 6.50243 7.01341 7.08871 7.28988 7.84526 8.18672 9.15807 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.046224 B = 0.007253 C = 0.007207 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 605.603399 B = 3859.705262 C = 3884.175736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.190 3.810 2 N -0.557 5.557 3 C -0.258 4.258 4 H 0.068 0.932 5 C -0.042 4.042 6 N -0.937 5.937 7 Si 0.978 3.022 8 H -0.271 1.271 9 H -0.291 1.291 10 H -0.285 1.285 11 C 0.299 3.701 12 N -0.487 5.487 13 C 0.042 3.958 14 C -0.049 4.049 15 Cl -0.050 7.050 16 C -0.152 4.152 17 C 0.178 3.822 18 N -0.844 5.844 19 H 0.010 0.990 20 H 0.024 0.976 21 H 0.033 0.967 22 H 0.250 0.750 23 H 0.168 0.832 24 H 0.167 0.833 25 H 0.409 0.591 26 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.985 -11.001 -5.747 13.779 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.047 3.953 2 N -0.279 5.279 3 C -0.387 4.387 4 H 0.086 0.914 5 C -0.237 4.237 6 N -0.584 5.584 7 Si 0.806 3.194 8 H -0.197 1.197 9 H -0.217 1.217 10 H -0.211 1.211 11 C 0.065 3.935 12 N -0.200 5.200 13 C -0.118 4.118 14 C -0.079 4.079 15 Cl -0.021 7.021 16 C -0.183 4.183 17 C 0.064 3.936 18 N -0.383 5.383 19 H 0.028 0.972 20 H 0.043 0.957 21 H 0.051 0.949 22 H 0.060 0.940 23 H 0.185 0.815 24 H 0.185 0.815 25 H 0.240 0.760 26 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 5.622 -10.587 -4.939 12.964 hybrid contribution 0.447 0.722 -0.680 1.088 sum 6.069 -9.865 -5.619 12.873 Atomic orbital electron populations 1.20775 0.80401 0.93820 1.00345 1.41415 1.02431 0.99097 1.84914 1.19286 0.91379 0.83559 1.44472 0.91390 1.25627 0.96838 1.00911 1.00336 1.70355 1.08322 1.25741 1.53938 0.85187 0.77143 0.78790 0.78297 1.19654 1.21693 1.21108 1.18353 0.97760 0.90170 0.87262 1.67845 1.12279 1.08799 1.31039 1.22543 0.98922 0.92243 0.98118 1.21745 1.00255 0.90592 0.95289 1.98338 1.75021 1.30050 1.98681 1.20985 1.04173 0.94706 0.98481 1.19147 0.94370 0.91599 0.88495 1.42260 1.58906 1.32388 1.04795 0.97183 0.95728 0.94863 0.93974 0.81528 0.81516 0.76010 0.76368 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.69 8.95 127.77 1.14 10.83 15 2 N -0.56 -28.39 2.22 -540.70 -1.20 -29.59 15 3 C -0.26 -14.06 9.73 84.03 0.82 -13.24 15 4 H 0.07 3.70 7.84 -2.91 -0.02 3.68 15 5 C -0.04 -2.31 5.40 84.85 0.46 -1.85 15 6 N -0.94 -53.52 9.60 21.64 0.21 -53.32 15 7 Si 0.98 44.17 29.56 68.60 2.03 46.19 15 8 H -0.27 -11.59 7.11 99.48 0.71 -10.88 15 9 H -0.29 -13.14 7.11 99.48 0.71 -12.44 15 10 H -0.28 -12.86 7.11 99.48 0.71 -12.15 15 11 C 0.30 13.47 5.97 133.26 0.80 14.27 15 12 N -0.49 -21.69 10.39 -192.55 -2.00 -23.69 15 13 C 0.04 1.47 10.97 84.70 0.93 2.40 15 14 C -0.05 -1.46 6.34 22.43 0.14 -1.32 15 15 Cl -0.05 -1.16 28.98 -2.72 -0.08 -1.24 15 16 C -0.15 -4.44 9.84 22.59 0.22 -4.22 15 17 C 0.18 6.39 6.81 38.44 0.26 6.65 15 18 N -0.84 -25.78 9.07 -50.70 -0.46 -26.24 15 19 H 0.01 0.45 7.90 -2.39 -0.02 0.43 15 20 H 0.02 1.39 6.81 -2.39 -0.02 1.37 15 21 H 0.03 1.72 7.33 -2.39 -0.02 1.70 15 22 H 0.25 13.92 8.31 -92.71 -0.77 13.15 15 23 H 0.17 4.95 8.06 -2.91 -0.02 4.92 15 24 H 0.17 3.64 8.06 -2.91 -0.02 3.61 15 25 H 0.41 8.99 8.86 -92.71 -0.82 8.16 15 26 H 0.41 14.24 8.10 -92.70 -0.75 13.49 15 Total: -1.00 -62.23 246.42 2.92 -59.31 By element: Atomic # 1 Polarization: 15.40 SS G_CDS: -0.34 Total: 15.05 kcal Atomic # 6 Polarization: 8.75 SS G_CDS: 4.77 Total: 13.52 kcal Atomic # 7 Polarization: -129.38 SS G_CDS: -3.45 Total: -132.83 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 17 Polarization: -1.16 SS G_CDS: -0.08 Total: -1.24 kcal Total: -62.23 2.92 -59.31 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166799666.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.212 kcal (2) G-P(sol) polarization free energy of solvation -62.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds