Wall clock time and date at job start Sun Mar 29 2020 21:54:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29608 * 1 3 3 Si 1.86789 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47126 * 239.99605 * 3 2 1 5 5 H 1.48502 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47494 * 119.99583 * 3 2 1 7 7 C 1.46423 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99481 * 191.22406 * 7 2 1 9 9 C 1.39273 * 120.00556 * 11.22429 * 7 2 1 10 10 C 1.42023 * 121.02839 * 25.39565 * 9 7 2 11 11 C 1.36261 * 118.31049 * 180.25065 * 10 9 7 12 12 C 1.39242 * 120.49702 * 359.74280 * 11 10 9 13 13 N 1.31421 * 122.30352 * 0.02562 * 12 11 10 14 14 C 1.32935 * 121.69182 * 359.97438 * 13 12 11 15 15 N 1.36421 * 120.37132 * 179.97438 * 14 13 12 16 16 C 1.40049 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.39417 * 126.09423 * 359.97438 * 16 15 14 18 18 C 1.38588 * 107.94568 * 180.02562 * 17 16 15 19 19 C 1.38959 * 108.14863 * 359.97438 * 18 17 16 20 20 C 1.38587 * 108.15324 * 0.02562 * 19 18 17 21 21 H 1.08009 * 126.02731 * 180.02562 * 20 19 18 22 22 H 0.96993 * 120.00051 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.84582 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.75585 * 179.71466 * 11 10 9 25 25 H 1.07996 * 118.84819 * 180.02562 * 12 11 10 26 26 H 0.97000 * 120.00218 * 180.02562 * 15 14 13 27 27 H 1.08002 * 126.02625 * 0.02562 * 17 16 15 28 28 H 1.07994 * 125.92506 * 180.26447 * 18 17 16 29 29 H 1.08000 * 125.92333 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2961 0.0000 0.0000 3 14 2.2300 1.6177 0.0000 4 1 3.0838 1.6963 -1.2125 5 1 1.2650 2.7464 -0.0006 6 1 3.0837 1.6965 1.2125 7 6 2.0281 -1.2681 0.0006 8 1 3.0926 -1.2769 0.1826 9 6 1.3518 -2.4628 -0.2337 10 6 0.1413 -2.4854 -0.9760 11 6 -0.4770 -3.6845 -1.1676 12 6 0.0735 -4.8541 -0.6501 13 7 1.1945 -4.8590 0.0358 14 6 1.8714 -3.7404 0.2757 15 7 3.0322 -3.7767 0.9915 16 6 3.5167 -4.9971 1.4785 17 6 2.9188 -6.2449 1.3083 18 6 3.7121 -7.1886 1.9414 19 6 4.8003 -6.5322 2.5035 20 6 4.6829 -5.1807 2.2202 21 1 5.3734 -4.4063 2.5203 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2809 -1.5748 -1.3747 24 1 -1.4012 -3.7280 -1.7247 25 1 -0.4387 -5.7899 -0.8182 26 1 3.5216 -2.9571 1.1637 27 1 1.9994 -6.4416 0.7767 28 1 3.5205 -8.2504 1.9858 29 1 5.5987 -6.9949 3.0647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171355611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:52 Heat of formation + Delta-G solvation = 66.101104 kcal Electronic energy + Delta-G solvation = -14597.782105 eV Core-core repulsion = 12178.784911 eV Total energy + Delta-G solvation = -2418.997194 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.088 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -36.83697 -35.20594 -32.62064 -31.91664 -29.19688 -27.19683 -24.18026 -23.72289 -22.86558 -19.89534 -19.16408 -16.24549 -15.96269 -15.72079 -14.39530 -13.73461 -13.49427 -12.68738 -12.12812 -11.63647 -11.22515 -10.86623 -10.41291 -10.25523 -9.74317 -9.59415 -9.50535 -9.22711 -8.54757 -8.46301 -8.27870 -8.18166 -7.99311 -7.65846 -6.65416 -6.06335 -5.64618 -5.32737 -3.88059 -3.45250 -2.56946 3.76513 3.81048 3.90804 4.36523 4.73317 4.84971 5.80215 6.56466 6.60296 6.86877 7.30833 7.65252 7.74125 7.91690 8.21301 8.31804 8.60405 8.71168 8.72658 8.81406 9.04747 9.23983 9.34444 9.45393 9.76615 9.82478 9.94114 10.07747 10.21382 10.36772 10.63842 11.00175 11.20744 11.22219 11.43991 11.66886 Molecular weight = 227.09amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.008434 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.010082 B = 3319.176932 C = 4229.112724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.787 5.787 2 C 0.069 3.931 3 Si 0.913 3.087 4 H -0.266 1.266 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.459 4.459 8 H 0.072 0.928 9 C 0.019 3.981 10 C -0.151 4.151 11 C -0.214 4.214 12 C -0.003 4.003 13 N -0.510 5.510 14 C 0.316 3.684 15 N -0.626 5.626 16 C 0.019 3.981 17 C -0.245 4.245 18 C -0.281 4.281 19 C -0.268 4.268 20 C -0.302 4.302 21 H 0.058 0.942 22 H 0.275 0.725 23 H 0.117 0.883 24 H 0.077 0.923 25 H 0.104 0.896 26 H 0.392 0.608 27 H 0.117 0.883 28 H 0.057 0.943 29 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 8.976 -4.046 10.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C -0.150 4.150 3 Si 0.738 3.262 4 H -0.191 1.191 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.491 4.491 8 H 0.091 0.909 9 C 0.011 3.989 10 C -0.176 4.176 11 C -0.238 4.238 12 C -0.156 4.156 13 N -0.228 5.228 14 C 0.074 3.926 15 N -0.246 5.246 16 C -0.073 4.073 17 C -0.266 4.266 18 C -0.300 4.300 19 C -0.287 4.287 20 C -0.323 4.323 21 H 0.076 0.924 22 H 0.087 0.913 23 H 0.135 0.865 24 H 0.096 0.904 25 H 0.122 0.878 26 H 0.225 0.775 27 H 0.135 0.865 28 H 0.075 0.925 29 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -2.855 8.197 -3.711 9.440 hybrid contribution 0.196 1.899 -0.131 1.914 sum -2.660 10.096 -3.842 11.125 Atomic orbital electron populations 1.69237 1.08289 1.28511 1.35168 1.27216 0.94358 1.00778 0.92623 0.86332 0.79952 0.80036 0.79909 1.19078 1.20935 1.19023 1.19989 0.94958 0.89440 1.44676 0.90946 1.18865 0.94843 0.90627 0.94544 1.20854 0.98344 0.96148 1.02260 1.20819 1.00813 0.94949 1.07237 1.21438 0.95138 0.95521 1.03549 1.67272 1.08567 1.28044 1.18902 1.19987 0.89115 0.89347 0.94165 1.40483 1.21867 1.07694 1.54538 1.17539 0.98061 0.84357 1.07368 1.20916 1.02586 0.91299 1.11807 1.20127 1.01709 0.93857 1.14356 1.19838 1.01068 0.94088 1.13749 1.19737 1.01126 0.94563 1.16876 0.92389 0.91305 0.86491 0.90428 0.87846 0.77486 0.86527 0.92491 0.92630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -29.38 10.84 55.98 0.61 -28.78 15 2 C 0.07 2.57 5.45 -15.20 -0.08 2.49 15 3 Si 0.91 28.14 29.66 -169.99 -5.04 23.10 15 4 H -0.27 -8.07 7.11 56.52 0.40 -7.67 15 5 H -0.28 -8.28 7.11 56.52 0.40 -7.88 15 6 H -0.27 -8.16 7.11 56.52 0.40 -7.75 15 7 C -0.46 -18.67 8.85 -35.90 -0.32 -18.99 15 8 H 0.07 2.89 6.89 -52.49 -0.36 2.53 15 9 C 0.02 0.82 5.78 -104.50 -0.60 0.21 15 10 C -0.15 -6.17 8.82 -38.84 -0.34 -6.51 15 11 C -0.21 -8.37 9.98 -39.92 -0.40 -8.77 15 12 C 0.00 -0.12 11.12 -17.35 -0.19 -0.31 15 13 N -0.51 -22.67 6.45 -10.63 -0.07 -22.74 15 14 C 0.32 14.15 7.64 -153.79 -1.17 12.97 15 15 N -0.63 -28.01 5.46 -8.09 -0.04 -28.06 15 16 C 0.02 0.89 7.00 -83.23 -0.58 0.31 15 17 C -0.24 -11.61 9.68 -39.01 -0.38 -11.98 15 18 C -0.28 -12.86 10.88 -39.19 -0.43 -13.29 15 19 C -0.27 -12.08 10.88 -39.19 -0.43 -12.51 15 20 C -0.30 -13.81 10.91 -39.01 -0.43 -14.23 15 21 H 0.06 2.50 8.06 -52.48 -0.42 2.07 15 22 H 0.28 9.35 8.27 -40.82 -0.34 9.01 15 23 H 0.12 4.70 6.14 -52.49 -0.32 4.38 15 24 H 0.08 2.72 8.06 -52.49 -0.42 2.30 15 25 H 0.10 3.84 8.06 -52.49 -0.42 3.42 15 26 H 0.39 16.63 7.23 -40.82 -0.30 16.34 15 27 H 0.12 5.53 5.57 -52.49 -0.29 5.24 15 28 H 0.06 2.43 8.06 -52.49 -0.42 2.00 15 29 H 0.06 2.31 8.06 -52.49 -0.42 1.89 15 LS Contribution 255.09 15.07 3.84 3.84 Total: -2.00 -88.79 255.09 -8.57 -97.37 By element: Atomic # 1 Polarization: 28.39 SS G_CDS: -2.52 Total: 25.87 kcal Atomic # 6 Polarization: -65.26 SS G_CDS: -5.35 Total: -70.61 kcal Atomic # 7 Polarization: -80.07 SS G_CDS: 0.49 Total: -79.57 kcal Atomic # 14 Polarization: 28.14 SS G_CDS: -5.04 Total: 23.10 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -88.79 -8.57 -97.37 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171355611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.468 kcal (2) G-P(sol) polarization free energy of solvation -88.794 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -97.367 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds