Wall clock time and date at job start Sun Mar 29 2020 21:54:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -2 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29608 * 1 3 3 Si 1.86789 * 119.99918 * 2 1 4 4 H 1.48500 * 109.47126 * 239.99605 * 3 2 1 5 5 H 1.48502 * 109.47217 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47494 * 119.99583 * 3 2 1 7 7 C 1.46423 * 119.99745 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99481 * 191.22406 * 7 2 1 9 9 C 1.39273 * 120.00556 * 11.22429 * 7 2 1 10 10 C 1.42023 * 121.02839 * 25.39565 * 9 7 2 11 11 C 1.36261 * 118.31049 * 180.25065 * 10 9 7 12 12 C 1.39242 * 120.49702 * 359.74280 * 11 10 9 13 13 N 1.31421 * 122.30352 * 0.02562 * 12 11 10 14 14 C 1.32935 * 121.69182 * 359.97438 * 13 12 11 15 15 N 1.36421 * 120.37132 * 179.97438 * 14 13 12 16 16 C 1.40049 * 120.00041 * 359.97438 * 15 14 13 17 17 C 1.39417 * 126.09423 * 359.97438 * 16 15 14 18 18 C 1.38588 * 107.94568 * 180.02562 * 17 16 15 19 19 C 1.38959 * 108.14863 * 359.97438 * 18 17 16 20 20 C 1.38587 * 108.15324 * 0.02562 * 19 18 17 21 21 H 1.08009 * 126.02731 * 180.02562 * 20 19 18 22 22 H 0.96993 * 120.00051 * 0.02562 * 1 2 3 23 23 H 1.07994 * 120.84582 * 359.97438 * 10 9 7 24 24 H 1.07998 * 119.75585 * 179.71466 * 11 10 9 25 25 H 1.07996 * 118.84819 * 180.02562 * 12 11 10 26 26 H 0.97000 * 120.00218 * 180.02562 * 15 14 13 27 27 H 1.08002 * 126.02625 * 0.02562 * 17 16 15 28 28 H 1.07994 * 125.92506 * 180.26447 * 18 17 16 29 29 H 1.08000 * 125.92333 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2961 0.0000 0.0000 3 14 2.2300 1.6177 0.0000 4 1 3.0838 1.6963 -1.2125 5 1 1.2650 2.7464 -0.0006 6 1 3.0837 1.6965 1.2125 7 6 2.0281 -1.2681 0.0006 8 1 3.0926 -1.2769 0.1826 9 6 1.3518 -2.4628 -0.2337 10 6 0.1413 -2.4854 -0.9760 11 6 -0.4770 -3.6845 -1.1676 12 6 0.0735 -4.8541 -0.6501 13 7 1.1945 -4.8590 0.0358 14 6 1.8714 -3.7404 0.2757 15 7 3.0322 -3.7767 0.9915 16 6 3.5167 -4.9971 1.4785 17 6 2.9188 -6.2449 1.3083 18 6 3.7121 -7.1886 1.9414 19 6 4.8003 -6.5322 2.5035 20 6 4.6829 -5.1807 2.2202 21 1 5.3734 -4.4063 2.5203 22 1 -0.4850 0.8400 -0.0004 23 1 -0.2809 -1.5748 -1.3747 24 1 -1.4012 -3.7280 -1.7247 25 1 -0.4387 -5.7899 -0.8182 26 1 3.5216 -2.9571 1.1637 27 1 1.9994 -6.4416 0.7767 28 1 3.5205 -8.2504 1.9858 29 1 5.5987 -6.9949 3.0647 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-2 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171355611.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:54:51 Heat of formation + Delta-G solvation = -4.603864 kcal Electronic energy + Delta-G solvation = -14600.848102 eV Core-core repulsion = 12178.784911 eV Total energy + Delta-G solvation = -2422.063192 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.088 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.13318 -38.65213 -35.67802 -35.26595 -32.39090 -30.44816 -27.66583 -27.01369 -26.27716 -23.05476 -22.46678 -19.53384 -19.27860 -19.12420 -17.57073 -16.97294 -16.71503 -15.61597 -15.38374 -14.61417 -14.53171 -13.92503 -13.15960 -13.12168 -13.02898 -12.69974 -12.64517 -12.07385 -11.97646 -11.73216 -11.66357 -11.47548 -11.12521 -11.05292 -9.89651 -9.27326 -8.81254 -8.48637 -7.48985 -6.89126 -5.82544 1.01033 1.37720 1.42192 1.52709 1.66200 2.27439 2.78926 3.05067 3.24809 3.29970 3.99610 4.51878 4.65101 4.84168 5.08161 5.16931 5.20011 5.23160 5.30826 5.49575 5.81153 5.91591 6.05592 6.22737 6.40937 6.52595 6.62691 6.72323 6.83894 6.94432 7.21247 7.57751 7.74877 7.90619 8.31360 8.35646 Molecular weight = 227.09amu Principal moments of inertia in cm(-1) A = 0.028711 B = 0.008434 C = 0.006619 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.010082 B = 3319.176932 C = 4229.112724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.799 5.799 2 C 0.031 3.969 3 Si 1.008 2.992 4 H -0.256 1.256 5 H -0.247 1.247 6 H -0.263 1.263 7 C -0.496 4.496 8 H 0.068 0.932 9 C 0.008 3.992 10 C -0.174 4.174 11 C -0.189 4.189 12 C -0.042 4.042 13 N -0.532 5.532 14 C 0.258 3.742 15 N -0.634 5.634 16 C 0.005 3.995 17 C -0.283 4.283 18 C -0.295 4.295 19 C -0.272 4.272 20 C -0.324 4.324 21 H 0.077 0.923 22 H 0.299 0.701 23 H 0.125 0.875 24 H 0.123 0.877 25 H 0.132 0.868 26 H 0.395 0.605 27 H 0.107 0.893 28 H 0.081 0.919 29 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.337 11.928 -4.437 13.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.189 4.189 3 Si 0.826 3.174 4 H -0.180 1.180 5 H -0.170 1.170 6 H -0.188 1.188 7 C -0.525 4.525 8 H 0.086 0.914 9 C 0.000 4.000 10 C -0.199 4.199 11 C -0.212 4.212 12 C -0.194 4.194 13 N -0.250 5.250 14 C 0.018 3.982 15 N -0.256 5.256 16 C -0.088 4.088 17 C -0.305 4.305 18 C -0.314 4.314 19 C -0.291 4.291 20 C -0.345 4.345 21 H 0.095 0.905 22 H 0.111 0.889 23 H 0.142 0.858 24 H 0.141 0.859 25 H 0.150 0.850 26 H 0.229 0.771 27 H 0.125 0.875 28 H 0.099 0.901 29 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -3.324 11.125 -4.127 12.322 hybrid contribution 0.141 1.185 -0.055 1.194 sum -3.183 12.309 -4.181 13.384 Atomic orbital electron populations 1.69210 1.10096 1.31734 1.31137 1.28412 0.95580 1.04631 0.90314 0.84946 0.78663 0.73673 0.80160 1.18000 1.17014 1.18769 1.20331 0.95224 0.90882 1.46113 0.91409 1.19291 0.95565 0.90799 0.94311 1.21033 0.98550 0.97187 1.03177 1.21183 1.01382 0.93627 1.05045 1.21907 0.95118 0.97516 1.04884 1.67140 1.09757 1.28847 1.19258 1.20302 0.90357 0.90539 0.96996 1.40342 1.22543 1.07071 1.55675 1.17934 0.98482 0.85167 1.07256 1.21114 1.03290 0.92473 1.13618 1.20478 1.01750 0.95060 1.14077 1.20231 1.01607 0.93899 1.13361 1.20088 1.01401 0.95739 1.17295 0.90496 0.88862 0.85770 0.85936 0.85046 0.77132 0.87507 0.90051 0.89180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -56.66 10.84 23.19 0.25 -56.41 15 2 C 0.03 2.16 5.45 87.15 0.48 2.64 15 3 Si 1.01 55.44 29.66 68.60 2.03 57.47 15 4 H -0.26 -13.73 7.11 99.48 0.71 -13.03 15 5 H -0.25 -12.14 7.11 99.48 0.71 -11.44 15 6 H -0.26 -14.45 7.11 99.48 0.71 -13.74 15 7 C -0.50 -39.90 8.85 24.65 0.22 -39.68 15 8 H 0.07 5.40 6.89 -2.91 -0.02 5.38 15 9 C 0.01 0.69 5.78 -19.79 -0.11 0.57 15 10 C -0.17 -14.02 8.82 22.75 0.20 -13.82 15 11 C -0.19 -14.42 9.98 22.05 0.22 -14.20 15 12 C -0.04 -3.35 11.12 85.00 0.95 -2.40 15 13 N -0.53 -47.86 6.45 -187.53 -1.21 -49.07 15 14 C 0.26 23.45 7.64 135.85 1.04 24.49 15 15 N -0.63 -57.55 5.46 -179.50 -0.98 -58.53 15 16 C 0.00 0.43 7.00 38.40 0.27 0.70 15 17 C -0.28 -27.08 9.68 22.64 0.22 -26.86 15 18 C -0.29 -26.66 10.88 22.53 0.25 -26.42 15 19 C -0.27 -24.00 10.88 22.53 0.25 -23.76 15 20 C -0.32 -29.38 10.91 22.64 0.25 -29.13 15 21 H 0.08 6.54 8.06 -2.91 -0.02 6.51 15 22 H 0.30 18.81 8.27 -92.71 -0.77 18.05 15 23 H 0.12 9.69 6.14 -2.91 -0.02 9.67 15 24 H 0.12 8.12 8.06 -2.91 -0.02 8.09 15 25 H 0.13 9.62 8.06 -2.91 -0.02 9.60 15 26 H 0.39 34.03 7.23 -92.71 -0.67 33.36 15 27 H 0.11 10.31 5.57 -2.91 -0.02 10.29 15 28 H 0.08 6.81 8.06 -2.91 -0.02 6.78 15 29 H 0.09 7.21 8.06 -2.91 -0.02 7.18 15 Total: -2.00 -182.51 255.09 4.82 -177.69 By element: Atomic # 1 Polarization: 76.20 SS G_CDS: 0.51 Total: 76.72 kcal Atomic # 6 Polarization: -152.08 SS G_CDS: 4.21 Total: -147.87 kcal Atomic # 7 Polarization: -162.07 SS G_CDS: -1.94 Total: -164.01 kcal Atomic # 14 Polarization: 55.44 SS G_CDS: 2.03 Total: 57.47 kcal Total: -182.51 4.82 -177.69 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171355611.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.088 kcal (2) G-P(sol) polarization free energy of solvation -182.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -177.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds