Wall clock time and date at job start Sun Mar 29 2020 22:12:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 110.32859 * 2 1 4 4 C 1.51326 * 110.36746 * 237.64156 * 2 1 3 5 5 O 1.20826 * 125.09316 * 63.48858 * 4 2 1 6 6 O 1.34360 * 109.85377 * 243.49373 * 4 2 1 7 7 C 1.45832 * 109.73908 * 339.16760 * 6 4 2 8 8 C 1.54496 * 110.36435 * 122.23952 * 2 1 3 9 9 H 1.08995 * 110.86666 * 252.34294 * 8 2 1 10 10 C 1.50697 * 110.86964 * 16.02057 * 8 2 1 11 11 O 1.21290 * 120.00383 * 80.90558 * 10 8 2 12 12 N 1.34784 * 119.99646 * 260.90910 * 10 8 2 13 13 C 1.46500 * 120.00057 * 5.09740 * 12 10 8 14 14 C 1.37098 * 119.99951 * 185.10421 * 12 10 8 15 15 H 1.08008 * 119.99928 * 24.54177 * 14 12 10 16 16 C 1.38946 * 120.00017 * 204.53906 * 14 12 10 17 17 N 1.31405 * 120.00194 * 14.03417 * 16 14 12 18 18 Si 1.86805 * 119.99936 * 194.03613 * 16 14 12 19 19 H 1.48504 * 109.47132 * 60.00058 * 18 16 14 20 20 H 1.48496 * 109.47251 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.47103 * 299.99814 * 18 16 14 22 22 H 1.09007 * 109.47451 * 295.14815 * 1 2 3 23 23 H 1.09004 * 109.47224 * 55.14333 * 1 2 3 24 24 H 1.08998 * 109.47655 * 175.14703 * 1 2 3 25 25 H 1.08993 * 110.43915 * 271.81256 * 7 6 4 26 26 H 1.08999 * 110.43882 * 149.41309 * 7 6 4 27 27 H 1.09001 * 109.46882 * 85.00813 * 13 12 10 28 28 H 1.08994 * 109.47197 * 205.01162 * 13 12 10 29 29 H 1.08995 * 109.47149 * 325.01213 * 13 12 10 30 30 H 0.96996 * 120.00026 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9087 1.0221 0.0000 4 6 2.0567 -0.7593 -1.1984 5 8 1.8848 -0.4427 -2.3517 6 8 2.7443 -1.8385 -0.7886 7 6 3.1682 -1.6564 0.5948 8 6 2.0677 -0.7727 1.2251 9 1 2.4924 -0.0886 1.9597 10 6 0.9857 -1.6211 1.8418 11 8 0.7112 -2.6994 1.3590 12 7 0.3228 -1.1816 2.9300 13 6 0.5749 0.1659 3.4467 14 6 -0.5873 -1.9956 3.5535 15 1 -0.5071 -3.0684 3.4573 16 6 -1.6128 -1.4405 4.3090 17 7 -1.8827 -0.1584 4.2091 18 14 -2.6078 -2.5169 5.4670 19 1 -1.7047 -3.1230 6.4782 20 1 -3.6336 -1.6904 6.1523 21 1 -3.2756 -3.5929 4.6914 22 1 -0.3634 0.4367 0.9303 23 1 -0.3634 0.5874 -0.8433 24 1 -0.3634 -1.0239 -0.0869 25 1 4.1323 -1.1495 0.6339 26 1 3.2234 -2.6176 1.1057 27 1 -0.0448 0.8832 2.9085 28 1 0.3309 0.1995 4.5084 29 1 1.6262 0.4176 3.3073 30 1 -2.5983 0.2292 4.7368 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001182080833.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:12:38 Heat of formation + Delta-G solvation = -127.313929 kcal Electronic energy + Delta-G solvation = -16532.256327 eV Core-core repulsion = 13713.500185 eV Total energy + Delta-G solvation = -2818.756142 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -42.38473 -40.13040 -38.43732 -36.62051 -35.20612 -33.48327 -30.78785 -28.26755 -26.70749 -26.39137 -24.24889 -21.65409 -20.49672 -19.00250 -18.64971 -18.00483 -17.27049 -16.92724 -16.40330 -16.27942 -15.82334 -14.97526 -14.82740 -14.50350 -14.08762 -13.52229 -13.36489 -13.27351 -13.19054 -12.85817 -12.76241 -12.57701 -12.19665 -12.16945 -12.08871 -11.67730 -11.13968 -10.97247 -10.28688 -9.63164 -8.33746 -5.96800 0.96729 1.38295 1.42544 1.51151 1.94361 2.24458 2.28455 2.87091 2.96635 3.04271 3.44451 3.58452 3.89904 4.15208 4.24343 4.29645 4.55485 4.59457 4.72975 4.78387 4.84594 5.07762 5.17203 5.46691 5.48335 5.73562 6.11456 6.33313 6.50044 7.19344 7.48675 8.04863 8.68387 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.047836 B = 0.008098 C = 0.007813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.189802 B = 3456.819586 C = 3582.952396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.123 4.123 3 H 0.167 0.833 4 C 0.490 3.510 5 O -0.497 6.497 6 O -0.360 6.360 7 C 0.074 3.926 8 C -0.136 4.136 9 H 0.160 0.840 10 C 0.449 3.551 11 O -0.631 6.631 12 N -0.452 5.452 13 C 0.111 3.889 14 C -0.342 4.342 15 H 0.068 0.932 16 C 0.003 3.997 17 N -0.889 5.889 18 Si 0.981 3.019 19 H -0.266 1.266 20 H -0.272 1.272 21 H -0.283 1.283 22 H 0.075 0.925 23 H 0.076 0.924 24 H 0.026 0.974 25 H 0.145 0.855 26 H 0.103 0.897 27 H 0.048 0.952 28 H 0.056 0.944 29 H 0.079 0.921 30 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.741 5.567 0.328 10.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.143 4.143 3 H 0.184 0.816 4 C 0.333 3.667 5 O -0.384 6.384 6 O -0.276 6.276 7 C 0.000 4.000 8 C -0.157 4.157 9 H 0.177 0.823 10 C 0.239 3.761 11 O -0.518 6.518 12 N -0.170 5.170 13 C -0.032 4.032 14 C -0.471 4.471 15 H 0.086 0.914 16 C -0.199 4.199 17 N -0.527 5.527 18 Si 0.805 3.195 19 H -0.191 1.191 20 H -0.196 1.196 21 H -0.209 1.209 22 H 0.094 0.906 23 H 0.095 0.905 24 H 0.045 0.955 25 H 0.163 0.837 26 H 0.122 0.878 27 H 0.066 0.934 28 H 0.075 0.925 29 H 0.098 0.902 30 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 8.432 5.161 -0.417 9.894 hybrid contribution -1.076 -0.703 0.618 1.426 sum 7.355 4.458 0.201 8.603 Atomic orbital electron populations 1.21644 0.92507 1.01401 1.03673 1.22423 0.98365 1.02842 0.90653 0.81576 1.23525 0.74498 0.78608 0.90099 1.90626 1.57856 1.67686 1.22277 1.87044 1.67205 1.40465 1.32911 1.24338 0.97500 1.02630 0.75498 1.22865 0.95626 0.98574 0.98675 0.82255 1.20400 0.86811 0.87986 0.80940 1.90548 1.71126 1.26482 1.63652 1.43785 1.35103 1.14588 1.23479 1.21621 0.98762 0.82640 1.00172 1.19496 1.08210 0.90708 1.28643 0.91430 1.25948 0.96927 0.97555 0.99499 1.70017 1.30624 1.12295 1.39748 0.85188 0.77982 0.78008 0.78334 1.19063 1.19640 1.20850 0.90567 0.90480 0.95455 0.83696 0.87835 0.93396 0.92510 0.90247 0.91709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.83 8.14 71.98 0.59 -4.24 16 2 C -0.12 -3.57 3.54 -10.83 -0.04 -3.61 16 3 H 0.17 3.22 8.14 -2.39 -0.02 3.20 16 4 C 0.49 17.15 7.90 71.43 0.56 17.71 16 5 O -0.50 -19.89 18.00 21.62 0.39 -19.50 16 6 O -0.36 -12.65 11.08 -53.02 -0.59 -13.23 16 7 C 0.07 1.94 7.05 72.52 0.51 2.45 16 8 C -0.14 -3.99 2.98 -10.50 -0.03 -4.02 16 9 H 0.16 3.21 5.89 -2.39 -0.01 3.20 16 10 C 0.45 19.73 4.55 87.65 0.40 20.13 16 11 O -0.63 -34.12 15.56 -3.06 -0.05 -34.16 16 12 N -0.45 -21.05 2.84 -658.89 -1.87 -22.92 16 13 C 0.11 4.18 8.13 127.77 1.04 5.22 16 14 C -0.34 -18.42 9.20 84.04 0.77 -17.64 16 15 H 0.07 3.94 7.51 -2.91 -0.02 3.92 16 16 C 0.00 0.18 5.01 84.93 0.43 0.60 16 17 N -0.89 -44.48 10.93 21.66 0.24 -44.24 16 18 Si 0.98 41.04 29.58 68.60 2.03 43.07 16 19 H -0.27 -10.73 7.11 99.48 0.71 -10.02 16 20 H -0.27 -10.77 7.11 99.48 0.71 -10.06 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H 0.08 2.85 6.20 -2.38 -0.01 2.83 16 23 H 0.08 2.45 8.14 -2.38 -0.02 2.43 16 24 H 0.03 1.20 6.95 -2.39 -0.02 1.18 16 25 H 0.15 2.15 8.14 -2.39 -0.02 2.13 16 26 H 0.10 2.97 7.71 -2.39 -0.02 2.95 16 27 H 0.05 1.86 6.74 -2.39 -0.02 1.85 16 28 H 0.06 2.35 6.80 -2.39 -0.02 2.34 16 29 H 0.08 2.12 5.89 -2.39 -0.01 2.11 16 30 H 0.27 12.95 8.31 -92.71 -0.77 12.18 16 Total: -1.00 -71.22 252.23 5.54 -65.69 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: 1.16 Total: 8.71 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: 4.23 Total: 16.60 kcal Atomic # 7 Polarization: -65.53 SS G_CDS: -1.64 Total: -67.16 kcal Atomic # 8 Polarization: -66.66 SS G_CDS: -0.25 Total: -66.90 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -71.22 5.54 -65.69 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001182080833.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.627 kcal (2) G-P(sol) polarization free energy of solvation -71.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds