Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86797 * 120.00442 * 2 1 4 4 H 1.48502 * 109.47041 * 239.99832 * 3 2 1 5 5 H 1.48501 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47299 * 119.99632 * 3 2 1 7 7 C 1.40246 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00734 * 170.83140 * 7 2 1 9 9 C 1.41007 * 119.99615 * 350.83137 * 7 2 1 10 10 C 1.41090 * 121.10151 * 327.14346 * 9 7 2 11 11 C 1.37570 * 118.98829 * 180.02562 * 10 9 7 12 12 N 1.32188 * 121.33938 * 359.97438 * 11 10 9 13 13 C 1.31692 * 122.49493 * 0.02562 * 12 11 10 14 14 C 1.39207 * 120.80973 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.71180 * 179.72390 * 14 13 12 16 16 C 1.39995 * 120.58118 * 353.74581 * 15 14 13 17 17 C 1.38303 * 118.26595 * 179.73519 * 16 15 14 18 18 N 1.32457 * 119.20532 * 0.53874 * 17 16 15 19 19 C 1.31859 * 121.10049 * 359.71689 * 18 17 16 20 20 N 1.31625 * 121.91468 * 0.02562 * 19 18 17 21 21 H 0.97002 * 119.99647 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.50614 * 0.04893 * 10 9 7 23 23 H 1.08002 * 119.33049 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.59238 * 179.97438 * 13 12 11 25 25 H 1.07999 * 120.86610 * 359.97429 * 16 15 14 26 26 H 1.08004 * 120.40211 * 180.27763 * 17 16 15 27 27 H 1.07998 * 119.04191 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0943 1.6962 -1.2125 5 1 1.2756 2.7464 -0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0076 -1.2146 0.0005 8 1 3.0772 -1.2208 -0.1485 9 6 1.3160 -2.4278 0.1957 10 6 0.1758 -2.4916 1.0242 11 6 -0.4653 -3.6982 1.1843 12 7 -0.0344 -4.7914 0.5788 13 6 1.0230 -4.7953 -0.2061 14 6 1.7447 -3.6273 -0.4360 15 6 2.9352 -3.6354 -1.3128 16 6 3.4354 -4.8391 -1.8234 17 6 4.5482 -4.7905 -2.6433 18 7 5.1057 -3.6184 -2.9075 19 6 4.6140 -2.5020 -2.4069 20 7 3.5543 -2.4969 -1.6261 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1884 -1.6066 1.5248 23 1 -1.3390 -3.7532 1.8169 24 1 1.3342 -5.7160 -0.6771 25 1 2.9624 -5.7806 -1.5865 26 1 4.9602 -5.6978 -3.0598 27 1 5.0953 -1.5646 -2.6436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001242917664.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = 74.978960 kcal Electronic energy + Delta-G solvation = -14693.801926 eV Core-core repulsion = 12223.419532 eV Total energy + Delta-G solvation = -2470.382393 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.12026 -38.25168 -34.34757 -33.29285 -31.84352 -30.56062 -29.09217 -26.24683 -23.94413 -23.55236 -21.44171 -20.84995 -17.82182 -16.70485 -16.38617 -15.54035 -14.95269 -14.52680 -14.21943 -13.99831 -13.68659 -12.91518 -12.74899 -12.46609 -12.30836 -11.53394 -11.32828 -10.99858 -10.43103 -10.36403 -10.19020 -9.85822 -9.51778 -9.22405 -8.42211 -8.11509 -7.86829 -7.56477 -7.00444 -4.65742 1.38419 1.72967 2.70288 2.86761 2.97215 3.00795 3.17753 3.78787 4.47752 4.66758 4.77649 4.93759 5.21761 5.48247 5.54102 5.78242 5.90191 6.06317 6.23432 6.44333 6.68791 6.75948 6.98028 7.07855 7.23828 7.26657 7.67018 7.86960 7.95842 8.42261 8.55075 8.62598 8.93812 9.40069 9.90921 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.013174 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.549747 B = 2124.822764 C = 3459.406990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.779 5.779 2 C 0.068 3.932 3 Si 0.921 3.079 4 H -0.259 1.259 5 H -0.278 1.278 6 H -0.261 1.261 7 C -0.388 4.388 8 H 0.116 0.884 9 C 0.144 3.856 10 C -0.194 4.194 11 C 0.078 3.922 12 N -0.574 5.574 13 C 0.153 3.847 14 C -0.247 4.247 15 C 0.267 3.733 16 C -0.256 4.256 17 C 0.137 3.863 18 N -0.564 5.564 19 C 0.286 3.714 20 N -0.500 5.500 21 H 0.287 0.713 22 H 0.124 0.876 23 H 0.123 0.877 24 H 0.126 0.874 25 H 0.136 0.864 26 H 0.153 0.847 27 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.095 -1.518 -1.327 4.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.403 5.403 2 C -0.153 4.153 3 Si 0.744 3.256 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.186 1.186 7 C -0.418 4.418 8 H 0.133 0.867 9 C 0.135 3.865 10 C -0.216 4.216 11 C -0.067 4.067 12 N -0.288 5.288 13 C -0.011 4.011 14 C -0.255 4.255 15 C 0.126 3.874 16 C -0.279 4.279 17 C -0.026 4.026 18 N -0.281 5.281 19 C -0.003 4.003 20 N -0.215 5.215 21 H 0.098 0.902 22 H 0.142 0.858 23 H 0.140 0.860 24 H 0.144 0.856 25 H 0.153 0.847 26 H 0.170 0.830 27 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 3.814 -1.243 -1.370 4.239 hybrid contribution 0.246 0.785 -0.077 0.826 sum 4.060 -0.459 -1.447 4.334 Atomic orbital electron populations 1.69710 1.07993 1.30273 1.32302 1.26252 0.94852 1.02177 0.92060 0.86137 0.80024 0.78924 0.80479 1.18306 1.20285 1.18564 1.20315 0.97670 0.88972 1.34793 0.86695 1.17794 0.89973 0.91772 0.86953 1.22235 0.99637 0.97680 1.02035 1.22079 0.98013 0.89165 0.97422 1.67392 1.16391 1.30815 1.14246 1.22136 0.90466 0.95287 0.93201 1.19205 1.00975 0.96934 1.08364 1.20120 0.91089 0.87377 0.88807 1.22727 1.00753 1.00284 1.04101 1.22790 0.91428 0.95902 0.92456 1.68279 1.33991 0.99464 1.26364 1.24908 0.90077 0.96137 0.89180 1.69105 1.08706 1.29447 1.14224 0.90204 0.85769 0.85954 0.85634 0.84660 0.82983 0.80129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.84 11.11 55.56 0.62 -18.22 15 2 C 0.07 1.59 5.29 -17.30 -0.09 1.50 15 3 Si 0.92 17.83 29.57 -169.99 -5.03 12.80 15 4 H -0.26 -5.01 7.11 56.52 0.40 -4.61 15 5 H -0.28 -5.22 7.11 56.52 0.40 -4.82 15 6 H -0.26 -4.99 7.11 56.52 0.40 -4.59 15 7 C -0.39 -9.69 7.75 -37.78 -0.29 -9.98 15 8 H 0.12 2.85 5.74 -52.49 -0.30 2.55 15 9 C 0.14 3.66 5.54 -106.25 -0.59 3.07 15 10 C -0.19 -4.75 8.72 -38.74 -0.34 -5.09 15 11 C 0.08 1.80 11.14 -17.64 -0.20 1.60 15 12 N -0.57 -13.32 10.32 -13.13 -0.14 -13.45 15 13 C 0.15 3.38 10.60 -17.25 -0.18 3.19 15 14 C -0.25 -5.86 5.95 -104.09 -0.62 -6.48 15 15 C 0.27 5.81 6.72 -82.62 -0.56 5.26 15 16 C -0.26 -4.56 9.54 -38.90 -0.37 -4.93 15 17 C 0.14 2.23 11.29 -17.26 -0.19 2.04 15 18 N -0.56 -10.17 10.43 -14.65 -0.15 -10.32 15 19 C 0.29 5.38 12.28 -92.24 -1.13 4.25 15 20 N -0.50 -10.94 6.81 -11.15 -0.08 -11.01 15 21 H 0.29 6.31 8.29 -40.82 -0.34 5.97 15 22 H 0.12 3.05 6.60 -52.48 -0.35 2.71 15 23 H 0.12 2.45 8.06 -52.49 -0.42 2.02 15 24 H 0.13 2.34 6.35 -52.49 -0.33 2.01 15 25 H 0.14 2.06 6.42 -52.49 -0.34 1.72 15 26 H 0.15 1.87 8.06 -52.48 -0.42 1.45 15 27 H 0.18 2.82 8.06 -52.49 -0.42 2.40 15 LS Contribution 241.96 15.07 3.65 3.65 Total: -1.00 -27.91 241.96 -7.41 -35.32 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -1.72 Total: 6.81 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: -4.56 Total: -5.57 kcal Atomic # 7 Polarization: -53.26 SS G_CDS: 0.25 Total: -53.01 kcal Atomic # 14 Polarization: 17.83 SS G_CDS: -5.03 Total: 12.80 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -27.91 -7.41 -35.32 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242917664.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.301 kcal (2) G-P(sol) polarization free energy of solvation -27.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.323 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds