Wall clock time and date at job start Sun Mar 29 2020 21:44:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30640 * 1 3 3 Si 1.86797 * 120.00442 * 2 1 4 4 H 1.48502 * 109.47041 * 239.99832 * 3 2 1 5 5 H 1.48501 * 109.47098 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47299 * 119.99632 * 3 2 1 7 7 C 1.40246 * 119.99966 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00734 * 170.83140 * 7 2 1 9 9 C 1.41007 * 119.99615 * 350.83137 * 7 2 1 10 10 C 1.41090 * 121.10151 * 327.14346 * 9 7 2 11 11 C 1.37570 * 118.98829 * 180.02562 * 10 9 7 12 12 N 1.32188 * 121.33938 * 359.97438 * 11 10 9 13 13 C 1.31692 * 122.49493 * 0.02562 * 12 11 10 14 14 C 1.39207 * 120.80973 * 359.97438 * 13 12 11 15 15 C 1.47856 * 120.71180 * 179.72390 * 14 13 12 16 16 C 1.39995 * 120.58118 * 353.74581 * 15 14 13 17 17 C 1.38303 * 118.26595 * 179.73519 * 16 15 14 18 18 N 1.32457 * 119.20532 * 0.53874 * 17 16 15 19 19 C 1.31859 * 121.10049 * 359.71689 * 18 17 16 20 20 N 1.31625 * 121.91468 * 0.02562 * 19 18 17 21 21 H 0.97002 * 119.99647 * 0.02562 * 1 2 3 22 22 H 1.08004 * 120.50614 * 0.04893 * 10 9 7 23 23 H 1.08002 * 119.33049 * 180.02562 * 11 10 9 24 24 H 1.07999 * 119.59238 * 179.97438 * 13 12 11 25 25 H 1.07999 * 120.86610 * 359.97429 * 16 15 14 26 26 H 1.08004 * 120.40211 * 180.27763 * 17 16 15 27 27 H 1.07998 * 119.04191 * 179.97438 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3064 0.0000 0.0000 3 14 2.2405 1.6176 0.0000 4 1 3.0943 1.6962 -1.2125 5 1 1.2756 2.7464 -0.0006 6 1 3.0942 1.6963 1.2125 7 6 2.0076 -1.2146 0.0005 8 1 3.0772 -1.2208 -0.1485 9 6 1.3160 -2.4278 0.1957 10 6 0.1758 -2.4916 1.0242 11 6 -0.4653 -3.6982 1.1843 12 7 -0.0344 -4.7914 0.5788 13 6 1.0230 -4.7953 -0.2061 14 6 1.7447 -3.6273 -0.4360 15 6 2.9352 -3.6354 -1.3128 16 6 3.4354 -4.8391 -1.8234 17 6 4.5482 -4.7905 -2.6433 18 7 5.1057 -3.6184 -2.9075 19 6 4.6140 -2.5020 -2.4069 20 7 3.5543 -2.4969 -1.6261 21 1 -0.4850 0.8401 -0.0004 22 1 -0.1884 -1.6066 1.5248 23 1 -1.3390 -3.7532 1.8169 24 1 1.3342 -5.7160 -0.6771 25 1 2.9624 -5.7806 -1.5865 26 1 4.9602 -5.6978 -3.0598 27 1 5.0953 -1.5646 -2.6436 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001242917664.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:36 Heat of formation + Delta-G solvation = 59.352238 kcal Electronic energy + Delta-G solvation = -14694.479551 eV Core-core repulsion = 12223.419532 eV Total energy + Delta-G solvation = -2471.060019 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 227.075 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.62391 -39.98032 -36.09234 -34.85974 -33.35075 -32.32978 -30.74800 -28.01691 -25.51634 -25.06652 -23.17354 -22.51051 -19.57814 -18.19442 -17.94924 -17.24902 -16.42968 -16.18691 -15.85813 -15.52338 -15.32189 -14.42195 -14.27936 -14.21484 -13.99273 -13.23296 -12.91618 -12.65913 -12.12834 -11.96187 -11.74322 -11.40822 -11.20584 -10.70425 -10.11421 -9.88188 -9.55039 -9.26803 -8.73578 -6.48574 -0.20109 0.33065 0.96656 1.17858 1.38587 1.49873 1.57094 2.18590 2.75140 3.12376 3.41469 3.48965 3.72936 3.82207 3.93561 4.34052 4.40078 4.53460 4.78680 4.89779 4.91994 5.04088 5.25226 5.40024 5.46953 5.70979 5.92451 6.16073 6.38110 6.60803 6.74643 6.82606 7.46026 7.61140 8.20436 Molecular weight = 227.08amu Principal moments of inertia in cm(-1) A = 0.019888 B = 0.013174 C = 0.008092 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.549747 B = 2124.822764 C = 3459.406990 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.031 3.969 3 Si 0.985 3.015 4 H -0.258 1.258 5 H -0.268 1.268 6 H -0.258 1.258 7 C -0.417 4.417 8 H 0.110 0.890 9 C 0.115 3.885 10 C -0.219 4.219 11 C 0.080 3.920 12 N -0.584 5.584 13 C 0.148 3.852 14 C -0.262 4.262 15 C 0.237 3.763 16 C -0.246 4.246 17 C 0.146 3.854 18 N -0.562 5.562 19 C 0.277 3.723 20 N -0.531 5.531 21 H 0.293 0.707 22 H 0.113 0.887 23 H 0.148 0.852 24 H 0.163 0.837 25 H 0.164 0.836 26 H 0.202 0.798 27 H 0.205 0.795 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.440 -2.545 -2.354 6.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.437 5.437 2 C -0.186 4.186 3 Si 0.805 3.195 4 H -0.182 1.182 5 H -0.192 1.192 6 H -0.182 1.182 7 C -0.447 4.447 8 H 0.128 0.872 9 C 0.106 3.894 10 C -0.241 4.241 11 C -0.066 4.066 12 N -0.299 5.299 13 C -0.014 4.014 14 C -0.269 4.269 15 C 0.095 3.905 16 C -0.268 4.268 17 C -0.018 4.018 18 N -0.278 5.278 19 C -0.012 4.012 20 N -0.246 5.246 21 H 0.104 0.896 22 H 0.131 0.869 23 H 0.165 0.835 24 H 0.180 0.820 25 H 0.182 0.818 26 H 0.219 0.781 27 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges 5.163 -2.289 -2.403 6.137 hybrid contribution -0.070 0.933 0.139 0.946 sum 5.093 -1.356 -2.264 5.736 Atomic orbital electron populations 1.69756 1.09194 1.31317 1.33397 1.27012 0.95516 1.04907 0.91201 0.85192 0.78820 0.75119 0.80366 1.18199 1.19212 1.18175 1.20403 0.97601 0.89827 1.36824 0.87230 1.18226 0.90675 0.93013 0.87464 1.22204 1.00704 0.98031 1.03208 1.22445 0.98360 0.88654 0.97166 1.67488 1.16982 1.30613 1.14808 1.22647 0.89800 0.96210 0.92718 1.19580 1.02020 0.96871 1.08427 1.20219 0.91302 0.89066 0.89875 1.23010 1.00842 0.99869 1.03119 1.23584 0.90303 0.96878 0.90995 1.68393 1.33724 0.99912 1.25773 1.25377 0.89471 0.97575 0.88741 1.69005 1.09871 1.30456 1.15271 0.89622 0.86910 0.83482 0.82009 0.81815 0.78117 0.77831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -40.50 11.11 21.88 0.24 -40.26 15 2 C 0.03 1.50 5.29 85.36 0.45 1.95 15 3 Si 0.98 36.98 29.57 68.60 2.03 39.01 15 4 H -0.26 -9.52 7.11 99.48 0.71 -8.82 15 5 H -0.27 -9.49 7.11 99.48 0.71 -8.78 15 6 H -0.26 -9.41 7.11 99.48 0.71 -8.70 15 7 C -0.42 -21.48 7.75 23.44 0.18 -21.30 15 8 H 0.11 5.61 5.74 -2.91 -0.02 5.59 15 9 C 0.11 6.02 5.54 -20.92 -0.12 5.90 15 10 C -0.22 -11.11 8.72 22.81 0.20 -10.91 15 11 C 0.08 3.68 11.14 84.48 0.94 4.63 15 12 N -0.58 -26.68 10.32 -195.44 -2.02 -28.69 15 13 C 0.15 6.38 10.60 84.95 0.90 7.28 15 14 C -0.26 -12.44 5.95 -19.52 -0.12 -12.56 15 15 C 0.24 10.08 6.72 41.89 0.28 10.36 15 16 C -0.25 -8.01 9.54 22.71 0.22 -7.79 15 17 C 0.15 4.15 11.29 84.61 0.96 5.11 15 18 N -0.56 -18.52 10.43 -200.27 -2.09 -20.61 15 19 C 0.28 9.97 12.28 180.92 2.22 12.20 15 20 N -0.53 -23.01 6.81 -189.18 -1.29 -24.30 15 21 H 0.29 13.22 8.29 -92.71 -0.77 12.45 15 22 H 0.11 5.83 6.60 -2.91 -0.02 5.82 15 23 H 0.15 5.84 8.06 -2.91 -0.02 5.82 15 24 H 0.16 5.56 6.35 -2.91 -0.02 5.55 15 25 H 0.16 4.27 6.42 -2.91 -0.02 4.25 15 26 H 0.20 3.73 8.06 -2.91 -0.02 3.70 15 27 H 0.21 6.05 8.06 -2.91 -0.02 6.03 15 Total: -1.00 -61.29 241.96 4.20 -57.09 By element: Atomic # 1 Polarization: 21.69 SS G_CDS: 1.21 Total: 22.90 kcal Atomic # 6 Polarization: -11.26 SS G_CDS: 6.12 Total: -5.14 kcal Atomic # 7 Polarization: -108.72 SS G_CDS: -5.15 Total: -113.87 kcal Atomic # 14 Polarization: 36.98 SS G_CDS: 2.03 Total: 39.01 kcal Total: -61.29 4.20 -57.09 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001242917664.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.442 kcal (2) G-P(sol) polarization free energy of solvation -61.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.204 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds