Wall clock time and date at job start Sun Mar 29 2020 22:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50697 * 115.54883 * 123.84174 * 3 2 1 5 5 C 1.38235 * 120.00294 * 145.30649 * 4 3 2 6 6 C 1.38231 * 120.00129 * 179.80849 * 5 4 3 7 7 C 1.38234 * 120.00308 * 0.42646 * 6 5 4 8 8 C 1.50697 * 120.00308 * 179.79208 * 7 6 5 9 9 C 1.50702 * 109.46732 * 270.01844 * 8 7 6 10 10 H 1.08000 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99772 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99597 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 119.99975 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47283 * 90.00361 * 13 11 9 15 15 H 1.48501 * 109.47000 * 210.00089 * 13 11 9 16 16 H 1.48494 * 109.47486 * 330.00138 * 13 11 9 17 17 C 1.38240 * 119.99554 * 359.80648 * 7 6 5 18 18 C 1.38233 * 120.00072 * 0.02562 * 17 7 6 19 19 C 1.52995 * 117.50089 * 338.17251 * 3 2 1 20 20 C 1.53000 * 117.49881 * 269.51306 * 3 2 1 21 21 H 1.08000 * 119.99720 * 0.02562 * 5 4 3 22 22 H 1.08008 * 119.99821 * 180.21074 * 6 5 4 23 23 H 1.08995 * 109.47372 * 30.01513 * 8 7 6 24 24 H 1.08995 * 109.47273 * 150.02102 * 8 7 6 25 25 H 0.96998 * 119.99962 * 180.02562 * 12 11 9 26 26 H 1.07997 * 119.99533 * 179.97438 * 17 7 6 27 27 H 1.07997 * 119.99807 * 179.97438 * 18 17 7 28 28 H 1.09007 * 117.50112 * 359.97438 * 19 3 2 29 29 H 1.08997 * 117.50394 * 145.01946 * 19 3 2 30 30 H 1.09000 * 117.49640 * 214.98307 * 20 3 2 31 31 H 1.08999 * 117.49959 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2576 0.7581 -1.1293 5 6 4.4434 1.4355 -0.9152 6 6 5.0413 2.1270 -1.9521 7 6 4.4488 2.1485 -3.2009 8 6 5.0982 2.9063 -4.3300 9 6 4.5888 4.3246 -4.3415 10 1 3.8674 4.6452 -3.6045 11 6 5.0439 5.2128 -5.2929 12 7 4.5997 6.4506 -5.3025 13 14 6.2922 4.6584 -6.5670 14 1 5.5815 4.1300 -7.7591 15 1 7.1380 5.8120 -6.9660 16 1 7.1495 3.5925 -5.9891 17 6 3.2605 1.4751 -3.4137 18 6 2.6644 0.7807 -2.3777 19 6 3.3150 -1.2588 0.5046 20 6 3.3144 0.0125 1.3571 21 1 4.9046 1.4215 0.0613 22 1 5.9696 2.6534 -1.7857 23 1 6.1793 2.9097 -4.1910 24 1 4.8552 2.4253 -5.2775 25 1 4.9195 7.0754 -5.9720 26 1 2.7974 1.4923 -4.3892 27 1 1.7358 0.2550 -2.5439 28 1 2.6902 -2.0879 0.8370 29 1 4.2502 -1.5394 0.0201 30 1 4.2492 0.5679 1.4330 31 1 2.6892 0.0202 2.2499 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250057459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:27 Heat of formation + Delta-G solvation = 70.912391 kcal Electronic energy + Delta-G solvation = -14230.692410 eV Core-core repulsion = 11863.674021 eV Total energy + Delta-G solvation = -2367.018389 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.79829 -37.58197 -35.65462 -33.32562 -31.40377 -30.46998 -27.84732 -24.71805 -23.03500 -22.58709 -21.70536 -20.20695 -17.77852 -16.81137 -16.19997 -14.78122 -14.72471 -14.40513 -14.08731 -13.63101 -13.47911 -13.18260 -12.75322 -12.65176 -12.45727 -11.97017 -11.79790 -11.72018 -11.45454 -10.87858 -10.72800 -10.53837 -10.32695 -10.00246 -9.98662 -9.41100 -8.62080 -8.44908 -7.85565 -6.10749 -4.10579 1.73682 1.88975 2.49347 2.68718 3.26065 3.34135 3.35945 3.65572 3.75141 4.23958 4.36671 4.38123 4.69842 4.86169 5.17995 5.21871 5.35971 5.41993 5.48453 5.62687 5.77654 5.82867 6.04973 6.06632 6.43744 6.46760 6.87179 6.88105 6.95829 6.97614 7.45193 7.50950 7.51803 7.66146 8.45228 8.94414 9.48993 11.02168 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046413 B = 0.005584 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.129532 B = 5013.417636 C = 5202.088105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C 0.250 3.750 3 C -0.002 4.002 4 C -0.082 4.082 5 C -0.109 4.109 6 C -0.118 4.118 7 C -0.022 4.022 8 C 0.012 3.988 9 C -0.515 4.515 10 H 0.074 0.926 11 C 0.070 3.930 12 N -0.899 5.899 13 Si 0.878 3.122 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.264 1.264 17 C -0.117 4.117 18 C -0.107 4.107 19 C -0.140 4.140 20 C -0.147 4.147 21 H 0.120 0.880 22 H 0.123 0.877 23 H 0.029 0.971 24 H 0.024 0.976 25 H 0.265 0.735 26 H 0.121 0.879 27 H 0.109 0.891 28 H 0.103 0.897 29 H 0.116 0.884 30 H 0.119 0.881 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.874 -14.276 10.205 17.648 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.107 5.107 2 C -0.067 4.067 3 C -0.005 4.005 4 C -0.083 4.083 5 C -0.127 4.127 6 C -0.136 4.136 7 C -0.022 4.022 8 C -0.025 4.025 9 C -0.553 4.553 10 H 0.092 0.908 11 C -0.132 4.132 12 N -0.537 5.537 13 Si 0.705 3.295 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.189 1.189 17 C -0.135 4.135 18 C -0.126 4.126 19 C -0.178 4.178 20 C -0.185 4.185 21 H 0.138 0.862 22 H 0.141 0.859 23 H 0.048 0.952 24 H 0.042 0.958 25 H 0.075 0.925 26 H 0.139 0.861 27 H 0.127 0.873 28 H 0.121 0.879 29 H 0.134 0.866 30 H 0.137 0.863 31 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.135 -14.091 10.104 17.340 hybrid contribution 0.852 0.043 -0.831 1.191 sum 0.987 -14.048 9.273 16.861 Atomic orbital electron populations 1.81230 1.12094 1.08999 1.08412 1.27652 0.93264 0.92823 0.93002 1.16828 0.81604 1.04547 0.97530 1.18348 0.96550 1.01360 0.92042 1.20822 0.95174 0.97825 0.98889 1.21040 1.00737 0.99279 0.92526 1.20365 0.93611 0.92287 0.95944 1.18843 0.96068 0.95815 0.91765 1.20918 1.26274 0.92254 1.15868 0.90809 1.25002 0.96169 0.94712 0.97328 1.69898 1.43964 1.04311 1.35530 0.86799 0.81990 0.78552 0.82134 1.20155 1.21220 1.18895 1.21044 0.95791 0.97704 0.99005 1.20795 0.99330 0.99869 0.92565 1.23273 1.02269 0.90751 1.01544 1.23301 1.02505 1.00724 0.91979 0.86204 0.85882 0.95240 0.95751 0.92547 0.86062 0.87256 0.87867 0.86604 0.86339 0.87739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -6.87 18.54 42.15 0.78 -6.09 16 2 C 0.25 3.43 14.09 -20.76 -0.29 3.14 16 3 C 0.00 -0.02 2.43 -158.45 -0.39 -0.40 16 4 C -0.08 -1.16 5.43 -104.62 -0.57 -1.73 16 5 C -0.11 -1.54 9.39 -39.59 -0.37 -1.92 16 6 C -0.12 -2.04 9.70 -39.59 -0.38 -2.42 16 7 C -0.02 -0.44 5.07 -104.62 -0.53 -0.97 16 8 C 0.01 0.28 4.17 -29.04 -0.12 0.16 16 9 C -0.52 -14.36 9.65 -34.44 -0.33 -14.69 16 10 H 0.07 2.27 7.98 -52.49 -0.42 1.85 16 11 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 12 N -0.90 -27.29 13.96 55.43 0.77 -26.51 16 13 Si 0.88 20.95 27.47 -169.99 -4.67 16.29 16 14 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 15 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 16 H -0.26 -5.98 6.54 56.52 0.37 -5.61 16 17 C -0.12 -2.16 9.70 -39.58 -0.38 -2.54 16 18 C -0.11 -1.72 9.32 -39.58 -0.37 -2.09 16 19 C -0.14 -1.10 9.91 -26.70 -0.26 -1.36 16 20 C -0.15 -1.17 9.55 -26.70 -0.25 -1.43 16 21 H 0.12 1.28 5.93 -52.49 -0.31 0.97 16 22 H 0.12 2.02 8.06 -52.48 -0.42 1.60 16 23 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 24 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 27 H 0.11 1.63 7.47 -52.49 -0.39 1.24 16 28 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 29 H 0.12 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.12 0.81 6.08 -51.93 -0.32 0.50 16 31 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 275.56 15.07 4.15 4.15 Total: -1.00 -31.35 275.56 -6.80 -38.15 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -3.48 Total: -1.61 kcal Atomic # 6 Polarization: -20.02 SS G_CDS: -4.36 Total: -24.38 kcal Atomic # 7 Polarization: -34.16 SS G_CDS: 1.55 Total: -32.61 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.67 Total: 16.29 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -31.35 -6.80 -38.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.063 kcal (2) G-P(sol) polarization free energy of solvation -31.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.151 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds