Wall clock time and date at job start Sun Mar 29 2020 22:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13592 * 1 3 3 C 1.47206 * 179.97438 * 2 1 4 4 C 1.50697 * 115.54883 * 123.84174 * 3 2 1 5 5 C 1.38235 * 120.00294 * 145.30649 * 4 3 2 6 6 C 1.38231 * 120.00129 * 179.80849 * 5 4 3 7 7 C 1.38234 * 120.00308 * 0.42646 * 6 5 4 8 8 C 1.50697 * 120.00308 * 179.79208 * 7 6 5 9 9 C 1.50702 * 109.46732 * 270.01844 * 8 7 6 10 10 H 1.08000 * 120.00121 * 0.02562 * 9 8 7 11 11 C 1.37882 * 119.99772 * 180.02562 * 9 8 7 12 12 N 1.31511 * 119.99597 * 180.02562 * 11 9 8 13 13 Si 1.86792 * 119.99975 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47283 * 90.00361 * 13 11 9 15 15 H 1.48501 * 109.47000 * 210.00089 * 13 11 9 16 16 H 1.48494 * 109.47486 * 330.00138 * 13 11 9 17 17 C 1.38240 * 119.99554 * 359.80648 * 7 6 5 18 18 C 1.38233 * 120.00072 * 0.02562 * 17 7 6 19 19 C 1.52995 * 117.50089 * 338.17251 * 3 2 1 20 20 C 1.53000 * 117.49881 * 269.51306 * 3 2 1 21 21 H 1.08000 * 119.99720 * 0.02562 * 5 4 3 22 22 H 1.08008 * 119.99821 * 180.21074 * 6 5 4 23 23 H 1.08995 * 109.47372 * 30.01513 * 8 7 6 24 24 H 1.08995 * 109.47273 * 150.02102 * 8 7 6 25 25 H 0.96998 * 119.99962 * 180.02562 * 12 11 9 26 26 H 1.07997 * 119.99533 * 179.97438 * 17 7 6 27 27 H 1.07997 * 119.99807 * 179.97438 * 18 17 7 28 28 H 1.09007 * 117.50112 * 359.97438 * 19 3 2 29 29 H 1.08997 * 117.50394 * 145.01946 * 19 3 2 30 30 H 1.09000 * 117.49640 * 214.98307 * 20 3 2 31 31 H 1.08999 * 117.49959 * 359.97438 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.2576 0.7581 -1.1293 5 6 4.4434 1.4355 -0.9152 6 6 5.0413 2.1270 -1.9521 7 6 4.4488 2.1485 -3.2009 8 6 5.0982 2.9063 -4.3300 9 6 4.5888 4.3246 -4.3415 10 1 3.8674 4.6452 -3.6045 11 6 5.0439 5.2128 -5.2929 12 7 4.5997 6.4506 -5.3025 13 14 6.2922 4.6584 -6.5670 14 1 5.5815 4.1300 -7.7591 15 1 7.1380 5.8120 -6.9660 16 1 7.1495 3.5925 -5.9891 17 6 3.2605 1.4751 -3.4137 18 6 2.6644 0.7807 -2.3777 19 6 3.3150 -1.2588 0.5046 20 6 3.3144 0.0125 1.3571 21 1 4.9046 1.4215 0.0613 22 1 5.9696 2.6534 -1.7857 23 1 6.1793 2.9097 -4.1910 24 1 4.8552 2.4253 -5.2775 25 1 4.9195 7.0754 -5.9720 26 1 2.7974 1.4923 -4.3892 27 1 1.7358 0.2550 -2.5439 28 1 2.6902 -2.0879 0.8370 29 1 4.2502 -1.5394 0.0201 30 1 4.2492 0.5679 1.4330 31 1 2.6892 0.0202 2.2499 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250057459.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:18:26 Heat of formation + Delta-G solvation = 53.252134 kcal Electronic energy + Delta-G solvation = -14231.458217 eV Core-core repulsion = 11863.674021 eV Total energy + Delta-G solvation = -2367.784196 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 227.101 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.88301 -38.70540 -36.72391 -35.23210 -33.10773 -31.75050 -29.46629 -25.97849 -24.33299 -23.62490 -22.86399 -21.63548 -18.97261 -18.80511 -17.21849 -16.38735 -16.01675 -15.75524 -15.35993 -14.78314 -14.70270 -14.44841 -14.34758 -13.97812 -13.77221 -13.48818 -13.30747 -12.92268 -12.48829 -12.32613 -11.99902 -11.81972 -11.73763 -11.63355 -11.35925 -11.21654 -10.78818 -9.73536 -9.20178 -8.29771 -6.35330 0.47969 0.59281 1.37918 1.39216 1.51393 1.51886 1.63356 2.35958 2.71915 2.83124 3.04924 3.16860 3.46076 3.86771 4.05349 4.13492 4.20080 4.31936 4.60337 4.73087 4.79375 4.82600 4.98526 5.04853 5.13127 5.20282 5.28531 5.33830 5.57421 5.61697 5.63455 6.02183 6.14920 6.28491 6.46746 6.71597 7.28469 8.86959 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.046413 B = 0.005584 C = 0.005381 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 603.129532 B = 5013.417636 C = 5202.088105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.482 5.482 2 C 0.267 3.733 3 C -0.037 4.037 4 C -0.065 4.065 5 C -0.097 4.097 6 C -0.126 4.126 7 C -0.061 4.061 8 C 0.018 3.982 9 C -0.521 4.521 10 H 0.025 0.975 11 C 0.006 3.994 12 N -0.951 5.951 13 Si 0.953 3.047 14 H -0.268 1.268 15 H -0.283 1.283 16 H -0.241 1.241 17 C -0.134 4.134 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.126 4.126 21 H 0.165 0.835 22 H 0.129 0.871 23 H 0.037 0.963 24 H 0.027 0.973 25 H 0.267 0.733 26 H 0.111 0.889 27 H 0.115 0.885 28 H 0.118 0.882 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.698 -16.607 11.835 20.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.158 5.158 2 C -0.049 4.049 3 C -0.041 4.041 4 C -0.066 4.066 5 C -0.114 4.114 6 C -0.144 4.144 7 C -0.061 4.061 8 C -0.019 4.019 9 C -0.559 4.559 10 H 0.043 0.957 11 C -0.191 4.191 12 N -0.591 5.591 13 Si 0.775 3.225 14 H -0.193 1.193 15 H -0.209 1.209 16 H -0.164 1.164 17 C -0.152 4.152 18 C -0.135 4.135 19 C -0.154 4.154 20 C -0.164 4.164 21 H 0.182 0.818 22 H 0.147 0.853 23 H 0.055 0.945 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.129 0.871 27 H 0.133 0.867 28 H 0.136 0.864 29 H 0.149 0.851 30 H 0.155 0.845 31 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.957 -16.447 11.749 20.307 hybrid contribution 0.192 0.738 -1.198 1.420 sum 2.149 -15.709 10.551 19.045 Atomic orbital electron populations 1.81248 1.13641 1.10867 1.10039 1.28117 0.93757 0.91375 0.91618 1.16965 0.80138 1.08062 0.98891 1.18625 0.96055 0.99892 0.91996 1.21189 0.94682 0.95801 0.99763 1.21219 1.01161 0.99760 0.92305 1.20221 0.95041 0.94452 0.96431 1.18680 0.96478 0.93195 0.93516 1.21183 1.25109 0.95098 1.14524 0.95660 1.26018 0.98595 0.94546 0.99892 1.70066 1.46106 1.05967 1.37001 0.85623 0.79243 0.78688 0.78919 1.19333 1.20851 1.16390 1.21048 0.95835 0.98739 0.99583 1.20920 0.99668 0.99852 0.93071 1.23476 1.02020 0.90176 0.99689 1.23553 1.02382 1.00235 0.90227 0.81764 0.85344 0.94455 0.95520 0.92381 0.87060 0.86703 0.86373 0.85097 0.84495 0.86343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.48 -15.03 18.54 20.01 0.37 -14.66 16 2 C 0.27 6.87 14.09 89.44 1.26 8.13 16 3 C -0.04 -0.71 2.43 -54.73 -0.13 -0.84 16 4 C -0.06 -1.67 5.43 -19.87 -0.11 -1.78 16 5 C -0.10 -2.43 9.39 22.27 0.21 -2.22 16 6 C -0.13 -4.22 9.70 22.27 0.22 -4.00 16 7 C -0.06 -2.48 5.07 -19.87 -0.10 -2.58 16 8 C 0.02 0.86 4.17 29.10 0.12 0.98 16 9 C -0.52 -30.18 9.65 25.60 0.25 -29.94 16 10 H 0.02 1.65 7.98 -2.91 -0.02 1.62 16 11 C 0.01 0.37 5.47 84.66 0.46 0.83 16 12 N -0.95 -59.86 13.96 21.45 0.30 -59.56 16 13 Si 0.95 43.45 27.47 68.60 1.88 45.34 16 14 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 15 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 16 H -0.24 -9.98 6.54 99.48 0.65 -9.33 16 17 C -0.13 -5.04 9.70 22.27 0.22 -4.82 16 18 C -0.12 -3.70 9.32 22.27 0.21 -3.49 16 19 C -0.12 -1.24 9.91 30.62 0.30 -0.94 16 20 C -0.13 -1.35 9.55 30.62 0.29 -1.06 16 21 H 0.17 2.61 5.93 -2.91 -0.02 2.59 16 22 H 0.13 4.04 8.06 -2.91 -0.02 4.02 16 23 H 0.04 1.66 7.14 -2.39 -0.02 1.64 16 24 H 0.03 1.21 7.51 -2.39 -0.02 1.19 16 25 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 26 H 0.11 4.22 8.06 -2.91 -0.02 4.19 16 27 H 0.11 3.42 7.47 -2.91 -0.02 3.40 16 28 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.13 1.10 8.14 -2.39 -0.02 1.08 16 30 H 0.14 1.00 6.08 -2.39 -0.01 0.98 16 31 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -72.24 275.56 6.83 -65.42 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.08 Total: 5.17 kcal Atomic # 6 Polarization: -44.91 SS G_CDS: 3.19 Total: -41.71 kcal Atomic # 7 Polarization: -74.88 SS G_CDS: 0.67 Total: -74.21 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 1.88 Total: 45.34 kcal Total: -72.24 6.83 -65.42 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250057459.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.671 kcal (2) G-P(sol) polarization free energy of solvation -72.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds