Wall clock time and date at job start Sun Mar 29 2020 21:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35664 * 117.00324 * 2 1 4 4 C 1.38890 * 119.67852 * 180.25458 * 3 2 1 5 5 C 1.38415 * 119.14609 * 180.27230 * 4 3 2 6 6 C 1.38770 * 118.49687 * 359.48086 * 5 4 3 7 7 C 1.50702 * 120.36127 * 180.23182 * 6 5 4 8 8 C 1.50704 * 109.47138 * 99.99793 * 7 6 5 9 9 H 1.08001 * 120.00191 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99816 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00263 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46831 * 59.99922 * 12 10 8 14 14 H 1.48492 * 109.47477 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46830 * 300.00321 * 12 10 8 16 16 C 1.38219 * 119.27665 * 0.25081 * 6 5 4 17 17 Cl 1.73602 * 119.59648 * 179.97438 * 16 6 5 18 18 N 1.32047 * 120.80551 * 0.02736 * 16 6 5 19 19 H 1.08996 * 109.47894 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46967 * 300.00478 * 1 2 3 21 21 H 1.08999 * 109.47453 * 59.99801 * 1 2 3 22 22 H 1.08006 * 120.42777 * 0.02564 * 4 3 2 23 23 H 1.08002 * 120.75444 * 179.76085 * 5 4 3 24 24 H 1.08990 * 109.47507 * 220.00001 * 7 6 5 25 25 H 1.09010 * 109.46708 * 340.00094 * 7 6 5 26 26 H 0.97009 * 119.99959 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4323 1.2736 -0.0054 5 6 4.0493 2.5126 0.0004 6 6 3.2528 3.6489 0.0004 7 6 3.8803 5.0190 0.0013 8 6 3.8661 5.5791 -1.3977 9 1 3.4444 5.0008 -2.2066 10 6 4.3914 6.8296 -1.6450 11 7 4.9054 7.5335 -0.6602 12 14 4.3732 7.5241 -3.3791 13 1 2.9710 7.6228 -3.8579 14 1 4.9916 8.8741 -3.3782 15 1 5.1417 6.6275 -4.2794 16 6 1.8775 3.5103 -0.0001 17 17 0.8731 4.9263 0.0005 18 7 1.3184 2.3141 0.0000 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 4.0222 0.3688 -0.0099 23 1 5.1263 2.5932 0.0004 24 1 3.3156 5.6769 0.6618 25 1 4.9095 4.9470 0.3535 26 1 5.2753 8.4132 -0.8343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001250058119.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:49 Heat of formation + Delta-G solvation = -18.399603 kcal Electronic energy + Delta-G solvation = -13192.206386 eV Core-core repulsion = 10683.049194 eV Total energy + Delta-G solvation = -2509.157192 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -40.22737 -37.77006 -35.80016 -33.66077 -32.06213 -30.90414 -27.78489 -26.39545 -23.58876 -22.89644 -21.05777 -18.16179 -16.89697 -16.38523 -15.77414 -14.93739 -14.59971 -14.18226 -14.01405 -13.52445 -12.85315 -12.28971 -11.93463 -11.66085 -11.51813 -11.36255 -10.80002 -10.72214 -10.46553 -10.26109 -9.87278 -9.64370 -9.21531 -9.15903 -8.42588 -7.72158 -6.05498 -4.08811 1.45476 1.74984 2.46844 3.32060 3.35232 3.36227 3.39751 4.11546 4.44897 4.93955 5.28256 5.31033 5.41556 5.42105 5.44590 5.61936 5.73828 5.92046 6.40911 6.59662 6.84997 7.43900 7.47647 7.59032 7.88229 8.07249 8.25262 8.93433 9.54625 11.04448 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.037917 B = 0.007891 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.268142 B = 3547.343922 C = 3783.192700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 O -0.312 6.312 3 C 0.303 3.697 4 C -0.186 4.186 5 C -0.042 4.042 6 C -0.099 4.099 7 C 0.055 3.945 8 C -0.507 4.507 9 H 0.055 0.945 10 C 0.063 3.937 11 N -0.893 5.893 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.287 1.287 15 H -0.276 1.276 16 C 0.203 3.797 17 Cl -0.021 7.021 18 N -0.540 5.540 19 H 0.091 0.909 20 H 0.056 0.944 21 H 0.056 0.944 22 H 0.139 0.861 23 H 0.147 0.853 24 H 0.042 0.958 25 H 0.033 0.967 26 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.137 -10.699 1.988 12.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 O -0.220 6.220 3 C 0.124 3.876 4 C -0.207 4.207 5 C -0.068 4.068 6 C -0.103 4.103 7 C 0.018 3.982 8 C -0.545 4.545 9 H 0.073 0.927 10 C -0.139 4.139 11 N -0.531 5.531 12 Si 0.720 3.280 13 H -0.201 1.201 14 H -0.212 1.212 15 H -0.202 1.202 16 C 0.041 3.959 17 Cl 0.008 6.992 18 N -0.265 5.265 19 H 0.109 0.891 20 H 0.074 0.926 21 H 0.075 0.925 22 H 0.157 0.843 23 H 0.165 0.835 24 H 0.060 0.940 25 H 0.051 0.949 26 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.955 -10.730 2.030 12.438 hybrid contribution 0.432 0.707 -1.002 1.300 sum -5.524 -10.022 1.028 11.490 Atomic orbital electron populations 1.22762 0.77871 1.02265 1.02429 1.86192 1.22411 1.24568 1.88844 1.19384 0.89047 0.83532 0.95661 1.21047 0.91624 0.99525 1.08506 1.21388 1.00836 0.89997 0.94576 1.21318 0.91526 1.00220 0.97201 1.18333 0.96032 0.85352 0.98513 1.20874 1.39563 1.01367 0.92683 0.92709 1.24924 0.95187 0.96748 0.97011 1.69934 1.39768 1.12190 1.31244 0.86641 0.78465 0.78131 0.84762 1.20107 1.21235 1.20200 1.21098 0.88901 0.86570 0.99294 1.98386 1.69761 1.34928 1.96158 1.66399 1.41777 0.98014 1.20344 0.89108 0.92554 0.92505 0.84343 0.83494 0.94000 0.94905 0.92760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.52 10.38 101.05 1.05 1.57 15 2 O -0.31 -4.82 10.47 -18.69 -0.20 -5.02 15 3 C 0.30 5.33 7.49 -17.12 -0.13 5.20 15 4 C -0.19 -3.03 10.04 -39.27 -0.39 -3.42 15 5 C -0.04 -0.76 9.81 -39.32 -0.39 -1.14 15 6 C -0.10 -2.11 5.09 -104.43 -0.53 -2.64 15 7 C 0.05 1.35 4.58 -29.03 -0.13 1.22 15 8 C -0.51 -13.63 8.87 -34.44 -0.31 -13.94 15 9 H 0.05 1.49 7.74 -52.49 -0.41 1.08 15 10 C 0.06 1.73 5.46 -17.82 -0.10 1.63 15 11 N -0.89 -25.59 13.29 55.43 0.74 -24.85 15 12 Si 0.89 21.26 29.54 -169.99 -5.02 16.23 15 13 H -0.28 -6.54 7.11 56.52 0.40 -6.14 15 14 H -0.29 -6.75 7.11 56.52 0.40 -6.35 15 15 H -0.28 -6.48 7.11 56.52 0.40 -6.08 15 16 C 0.20 4.24 7.26 -17.47 -0.13 4.11 15 17 Cl -0.02 -0.43 27.47 -51.86 -1.42 -1.86 15 18 N -0.54 -10.45 9.19 -10.44 -0.10 -10.54 15 19 H 0.09 0.80 8.14 -51.93 -0.42 0.38 15 20 H 0.06 0.70 8.10 -51.93 -0.42 0.28 15 21 H 0.06 0.72 8.10 -51.93 -0.42 0.30 15 22 H 0.14 1.81 8.06 -52.48 -0.42 1.39 15 23 H 0.15 2.30 8.06 -52.49 -0.42 1.88 15 24 H 0.04 1.09 7.36 -51.93 -0.38 0.71 15 25 H 0.03 0.83 8.03 -51.92 -0.42 0.41 15 26 H 0.26 7.17 8.31 -40.82 -0.34 6.83 15 LS Contribution 252.17 15.07 3.80 3.80 Total: -1.00 -29.25 252.17 -5.70 -34.95 By element: Atomic # 1 Polarization: -2.86 SS G_CDS: -2.45 Total: -5.31 kcal Atomic # 6 Polarization: -6.36 SS G_CDS: -1.05 Total: -7.41 kcal Atomic # 7 Polarization: -36.04 SS G_CDS: 0.64 Total: -35.40 kcal Atomic # 8 Polarization: -4.82 SS G_CDS: -0.20 Total: -5.02 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.42 Total: -1.86 kcal Total LS contribution 3.80 Total: 3.80 kcal Total: -29.25 -5.70 -34.95 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058119.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.553 kcal (2) G-P(sol) polarization free energy of solvation -29.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.695 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds