Wall clock time and date at job start Sun Mar 29 2020 21:32:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.35664 * 117.00324 * 2 1 4 4 C 1.38890 * 119.67852 * 180.25458 * 3 2 1 5 5 C 1.38415 * 119.14609 * 180.27230 * 4 3 2 6 6 C 1.38770 * 118.49687 * 359.48086 * 5 4 3 7 7 C 1.50702 * 120.36127 * 180.23182 * 6 5 4 8 8 C 1.50704 * 109.47138 * 99.99793 * 7 6 5 9 9 H 1.08001 * 120.00191 * 0.02562 * 8 7 6 10 10 C 1.37872 * 119.99816 * 180.02562 * 8 7 6 11 11 N 1.31514 * 120.00263 * 0.02562 * 10 8 7 12 12 Si 1.86806 * 120.00061 * 180.02562 * 10 8 7 13 13 H 1.48497 * 109.46831 * 59.99922 * 12 10 8 14 14 H 1.48492 * 109.47477 * 179.97438 * 12 10 8 15 15 H 1.48498 * 109.46830 * 300.00321 * 12 10 8 16 16 C 1.38219 * 119.27665 * 0.25081 * 6 5 4 17 17 Cl 1.73602 * 119.59648 * 179.97438 * 16 6 5 18 18 N 1.32047 * 120.80551 * 0.02736 * 16 6 5 19 19 H 1.08996 * 109.47894 * 180.02562 * 1 2 3 20 20 H 1.09003 * 109.46967 * 300.00478 * 1 2 3 21 21 H 1.08999 * 109.47453 * 59.99801 * 1 2 3 22 22 H 1.08006 * 120.42777 * 0.02564 * 4 3 2 23 23 H 1.08002 * 120.75444 * 179.76085 * 5 4 3 24 24 H 1.08990 * 109.47507 * 220.00001 * 7 6 5 25 25 H 1.09010 * 109.46708 * 340.00094 * 7 6 5 26 26 H 0.97009 * 119.99959 * 179.97438 * 11 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0450 1.2087 0.0000 4 6 3.4323 1.2736 -0.0054 5 6 4.0493 2.5126 0.0004 6 6 3.2528 3.6489 0.0004 7 6 3.8803 5.0190 0.0013 8 6 3.8661 5.5791 -1.3977 9 1 3.4444 5.0008 -2.2066 10 6 4.3914 6.8296 -1.6450 11 7 4.9054 7.5335 -0.6602 12 14 4.3732 7.5241 -3.3791 13 1 2.9710 7.6228 -3.8579 14 1 4.9916 8.8741 -3.3782 15 1 5.1417 6.6275 -4.2794 16 6 1.8775 3.5103 -0.0001 17 17 0.8731 4.9263 0.0005 18 7 1.3184 2.3141 0.0000 19 1 -0.3635 -1.0276 0.0005 20 1 -0.3633 0.5139 0.8900 21 1 -0.3634 0.5138 -0.8899 22 1 4.0222 0.3688 -0.0099 23 1 5.1263 2.5932 0.0004 24 1 3.3156 5.6769 0.6618 25 1 4.9095 4.9470 0.3535 26 1 5.2753 8.4132 -0.8343 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001250058119.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:48 Heat of formation + Delta-G solvation = -37.570978 kcal Electronic energy + Delta-G solvation = -13193.037720 eV Core-core repulsion = 10683.049194 eV Total energy + Delta-G solvation = -2509.988526 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 227.045 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.62465 -39.09540 -37.35147 -35.54373 -33.71724 -32.48264 -29.27597 -27.83706 -25.38565 -24.30686 -22.69652 -19.46272 -18.48706 -18.28285 -17.02897 -16.76364 -16.02177 -15.66438 -15.38545 -15.01007 -14.25281 -14.17901 -13.59177 -13.32721 -12.86455 -12.79527 -12.61108 -12.51708 -12.00566 -11.90019 -11.67348 -11.46788 -10.75997 -10.70045 -10.51088 -9.24445 -8.13957 -6.23807 0.01030 0.28419 0.93158 1.43031 1.44558 1.51998 2.13844 2.42929 2.68661 3.18769 3.53367 3.94249 4.05800 4.26317 4.43532 4.47252 4.51656 4.77140 4.89475 5.13653 5.33723 5.46152 5.67786 5.78655 6.13512 6.21881 6.62482 6.84880 7.42955 8.95304 Molecular weight = 227.05amu Principal moments of inertia in cm(-1) A = 0.037917 B = 0.007891 C = 0.007399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 738.268142 B = 3547.343922 C = 3783.192700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.309 6.309 3 C 0.302 3.698 4 C -0.170 4.170 5 C -0.037 4.037 6 C -0.128 4.128 7 C 0.066 3.934 8 C -0.512 4.512 9 H 0.048 0.952 10 C 0.014 3.986 11 N -0.925 5.925 12 Si 0.951 3.049 13 H -0.274 1.274 14 H -0.282 1.282 15 H -0.267 1.267 16 C 0.189 3.811 17 Cl -0.033 7.033 18 N -0.549 5.549 19 H 0.131 0.869 20 H 0.052 0.948 21 H 0.049 0.951 22 H 0.179 0.821 23 H 0.169 0.831 24 H 0.018 0.982 25 H 0.019 0.981 26 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 -12.659 1.263 13.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.217 6.217 3 C 0.122 3.878 4 C -0.190 4.190 5 C -0.062 4.062 6 C -0.131 4.131 7 C 0.029 3.971 8 C -0.550 4.550 9 H 0.067 0.933 10 C -0.184 4.184 11 N -0.565 5.565 12 Si 0.776 3.224 13 H -0.200 1.200 14 H -0.208 1.208 15 H -0.192 1.192 16 C 0.028 3.972 17 Cl -0.004 7.004 18 N -0.276 5.276 19 H 0.149 0.851 20 H 0.071 0.929 21 H 0.068 0.932 22 H 0.197 0.803 23 H 0.186 0.814 24 H 0.036 0.964 25 H 0.038 0.962 26 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.902 -12.709 1.303 14.073 hybrid contribution 0.353 1.152 -0.736 1.412 sum -5.548 -11.557 0.567 12.832 Atomic orbital electron populations 1.23047 0.76109 1.04777 1.01904 1.86218 1.24103 1.23061 1.88288 1.19815 0.89905 0.83720 0.94345 1.21415 0.91366 1.00210 1.06047 1.21633 1.01717 0.89557 0.93305 1.21092 0.92075 0.99588 1.00355 1.18027 0.95070 0.87169 0.96875 1.21117 1.38818 1.01465 0.93645 0.93348 1.25678 0.94994 0.97189 1.00555 1.70041 1.40821 1.12562 1.33125 0.85716 0.78474 0.77651 0.80559 1.19950 1.20779 1.19237 1.21057 0.88715 0.86947 1.00453 1.98370 1.70002 1.35766 1.96309 1.66390 1.42181 0.97947 1.21040 0.85125 0.92924 0.93196 0.80331 0.81405 0.96398 0.96221 0.92708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.79 10.38 113.37 1.18 1.97 15 2 O -0.31 -8.55 10.47 -89.81 -0.94 -9.49 15 3 C 0.30 9.87 7.49 84.78 0.63 10.50 15 4 C -0.17 -4.96 10.04 22.47 0.23 -4.74 15 5 C -0.04 -1.24 9.81 22.44 0.22 -1.02 15 6 C -0.13 -5.39 5.09 -19.74 -0.10 -5.49 15 7 C 0.07 3.31 4.58 29.10 0.13 3.45 15 8 C -0.51 -27.83 8.87 25.60 0.23 -27.60 15 9 H 0.05 2.64 7.74 -2.91 -0.02 2.61 15 10 C 0.01 0.79 5.46 84.65 0.46 1.26 15 11 N -0.93 -53.79 13.29 21.45 0.28 -53.50 15 12 Si 0.95 43.52 29.54 68.60 2.03 45.54 15 13 H -0.27 -12.39 7.11 99.48 0.71 -11.69 15 14 H -0.28 -12.64 7.11 99.48 0.71 -11.93 15 15 H -0.27 -11.77 7.11 99.48 0.71 -11.06 15 16 C 0.19 7.88 7.26 84.66 0.61 8.49 15 17 Cl -0.03 -1.38 27.47 -2.72 -0.07 -1.46 15 18 N -0.55 -20.64 9.19 -299.80 -2.76 -23.39 15 19 H 0.13 1.80 8.14 -2.39 -0.02 1.78 15 20 H 0.05 1.20 8.10 -2.39 -0.02 1.18 15 21 H 0.05 1.17 8.10 -2.39 -0.02 1.15 15 22 H 0.18 3.76 8.06 -2.91 -0.02 3.74 15 23 H 0.17 4.86 8.06 -2.91 -0.02 4.84 15 24 H 0.02 0.97 7.36 -2.39 -0.02 0.95 15 25 H 0.02 1.01 8.03 -2.38 -0.02 0.99 15 26 H 0.26 14.56 8.31 -92.70 -0.77 13.79 15 Total: -1.00 -62.45 252.17 3.32 -59.13 By element: Atomic # 1 Polarization: -4.84 SS G_CDS: 1.19 Total: -3.65 kcal Atomic # 6 Polarization: -16.78 SS G_CDS: 3.59 Total: -13.18 kcal Atomic # 7 Polarization: -74.42 SS G_CDS: -2.47 Total: -76.90 kcal Atomic # 8 Polarization: -8.55 SS G_CDS: -0.94 Total: -9.49 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 17 Polarization: -1.38 SS G_CDS: -0.07 Total: -1.46 kcal Total: -62.45 3.32 -59.13 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001250058119.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.563 kcal (2) G-P(sol) polarization free energy of solvation -62.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.134 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds