Wall clock time and date at job start Sun Mar 29 2020 22:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47053 * 240.00249 * 3 2 1 5 5 H 1.48498 * 109.47402 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47199 * 120.00373 * 3 2 1 7 7 C 1.40044 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99880 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00041 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00047 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00041 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47130 * 180.02562 * 12 11 9 14 14 N 1.46497 * 109.47130 * 179.97438 * 13 12 11 15 15 C 1.47057 * 125.40952 * 90.00073 * 14 13 12 16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 13 17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14 18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15 19 19 O 1.21594 * 123.03846 * 180.09410 * 18 17 16 20 20 H 0.96998 * 120.00249 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00099 * 0.02562 * 11 9 7 22 22 H 1.09000 * 109.47188 * 59.99765 * 12 11 9 23 23 H 1.09002 * 109.47370 * 299.99891 * 12 11 9 24 24 H 1.09000 * 109.47340 * 59.99781 * 13 12 11 25 25 H 1.09001 * 109.47326 * 300.00351 * 13 12 11 26 26 H 1.09002 * 110.54831 * 298.59477 * 15 14 13 27 27 H 1.08997 * 110.54826 * 61.25951 * 15 14 13 28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14 29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14 30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9164 0.0000 13 6 2.2107 -6.0793 0.0005 14 7 1.4782 -7.3480 0.0017 15 6 1.0518 -8.0868 -1.1961 16 6 0.3352 -9.3292 -0.6323 17 7 0.4326 -9.1555 0.8282 18 6 1.0896 -8.0189 1.0940 19 8 1.3134 -7.6315 2.2246 20 1 -0.4850 0.8400 0.0004 21 1 2.9190 -3.6477 -0.0002 22 1 0.5894 -4.9743 -0.8897 23 1 0.5901 -4.9740 0.8903 24 1 2.8374 -6.0212 0.8905 25 1 2.8374 -6.0220 -0.8894 26 1 0.3637 -7.4864 -1.7912 27 1 1.9157 -8.3803 -1.7924 28 1 -0.7080 -9.3452 -0.9477 29 1 0.8449 -10.2402 -0.9460 30 1 0.0781 -9.7681 1.4914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001354192932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:13 Heat of formation + Delta-G solvation = -52.286257 kcal Electronic energy + Delta-G solvation = -15363.504339 eV Core-core repulsion = 12580.294392 eV Total energy + Delta-G solvation = -2783.209947 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.90898 -37.32226 -36.25245 -34.86491 -32.83862 -32.13163 -29.34293 -28.15367 -26.01060 -23.19364 -22.79286 -20.15448 -19.64793 -17.71475 -17.14214 -16.55678 -16.01425 -15.27546 -14.69943 -14.37329 -14.20833 -13.81759 -13.72758 -13.48694 -12.82347 -12.43234 -12.26009 -12.02982 -11.46665 -11.12714 -11.05859 -10.63380 -10.42961 -10.23185 -10.10929 -9.32710 -8.81525 -8.58034 -7.59558 -7.49226 -6.15387 -4.61142 2.55180 3.18587 3.21770 3.23228 3.25352 3.82865 4.14661 4.26442 4.62444 4.71109 4.88195 5.03934 5.19095 5.31266 5.45102 5.59407 5.71700 5.75340 5.90774 6.47520 6.58052 6.80161 7.04399 7.46325 7.52351 7.94787 8.10347 8.34768 8.63997 9.05254 9.55760 10.63467 10.81729 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.064048 B = 0.004932 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.066068 B = 5675.715731 C = 5706.471680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.909 3.091 4 H -0.268 1.268 5 H -0.281 1.281 6 H -0.268 1.268 7 C -0.545 4.545 8 H 0.068 0.932 9 C 0.555 3.445 10 O -0.580 6.580 11 N -0.766 5.766 12 C 0.118 3.882 13 C 0.143 3.857 14 N -0.627 5.627 15 C 0.090 3.910 16 C 0.094 3.906 17 N -0.747 5.747 18 C 0.697 3.303 19 O -0.583 6.583 20 H 0.269 0.731 21 H 0.380 0.620 22 H 0.048 0.952 23 H 0.052 0.948 24 H 0.087 0.913 25 H 0.082 0.918 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.714 -16.502 -4.671 17.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.132 4.132 3 Si 0.734 3.266 4 H -0.193 1.193 5 H -0.206 1.206 6 H -0.193 1.193 7 C -0.582 4.582 8 H 0.086 0.914 9 C 0.359 3.641 10 O -0.463 6.463 11 N -0.422 5.422 12 C -0.009 4.009 13 C 0.020 3.980 14 N -0.366 5.366 15 C -0.034 4.034 16 C -0.031 4.031 17 N -0.409 5.409 18 C 0.398 3.602 19 O -0.460 6.460 20 H 0.079 0.921 21 H 0.212 0.788 22 H 0.066 0.934 23 H 0.070 0.930 24 H 0.105 0.895 25 H 0.101 0.899 26 H 0.102 0.898 27 H 0.100 0.900 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 2.824 -16.036 -4.117 16.795 hybrid contribution 0.648 0.419 0.084 0.777 sum 3.473 -15.617 -4.033 16.499 Atomic orbital electron populations 1.70016 1.07090 1.27358 1.35316 1.25712 0.94615 1.00297 0.92618 0.86417 0.79784 0.80994 0.79425 1.19293 1.20588 1.19267 1.20843 0.93571 0.89320 1.54512 0.91377 1.18227 0.87214 0.82340 0.76318 1.90601 1.14147 1.86761 1.54789 1.46031 1.08524 1.04643 1.83026 1.21192 0.94556 0.83964 1.01153 1.21440 0.93449 0.79747 1.03346 1.47053 1.60352 1.23561 1.05663 1.22399 0.99662 0.92099 0.89264 1.22380 1.01557 0.98218 0.80955 1.45167 1.62378 1.25408 1.07970 1.15929 0.78776 0.80744 0.84791 1.90984 1.62432 1.71492 1.21084 0.92061 0.78840 0.93387 0.92964 0.89482 0.89946 0.89780 0.90025 0.90003 0.90140 0.73171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.56 11.83 55.55 0.66 -22.90 16 2 C 0.09 2.48 5.50 -17.37 -0.10 2.38 16 3 Si 0.91 20.39 29.56 -169.99 -5.02 15.37 16 4 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 5 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 6 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 7 C -0.55 -15.69 9.54 -35.63 -0.34 -16.03 16 8 H 0.07 1.77 7.85 -52.49 -0.41 1.36 16 9 C 0.56 16.29 7.75 -12.98 -0.10 16.19 16 10 O -0.58 -19.48 15.02 5.20 0.08 -19.40 16 11 N -0.77 -17.57 5.55 -61.72 -0.34 -17.91 16 12 C 0.12 2.38 6.00 -4.04 -0.02 2.36 16 13 C 0.14 2.14 6.11 -4.04 -0.02 2.12 16 14 N -0.63 -8.68 2.96 -178.81 -0.53 -9.21 16 15 C 0.09 0.80 7.67 -3.16 -0.02 0.78 16 16 C 0.09 0.67 8.08 -2.98 -0.02 0.64 16 17 N -0.75 -8.04 6.39 -64.46 -0.41 -8.45 16 18 C 0.70 10.99 8.60 -88.40 -0.76 10.23 16 19 O -0.58 -11.99 17.53 5.28 0.09 -11.90 16 20 H 0.27 7.46 8.29 -40.82 -0.34 7.12 16 21 H 0.38 7.43 8.45 -40.82 -0.35 7.09 16 22 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 23 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 24 H 0.09 1.38 7.91 -51.93 -0.41 0.97 16 25 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 26 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.43 3.76 8.96 -40.82 -0.37 3.39 16 LS Contribution 267.88 15.07 4.04 4.04 Total: -1.00 -39.53 267.88 -6.46 -45.99 By element: Atomic # 1 Polarization: 9.34 SS G_CDS: -3.63 Total: 5.71 kcal Atomic # 6 Polarization: 20.06 SS G_CDS: -1.39 Total: 18.67 kcal Atomic # 7 Polarization: -57.85 SS G_CDS: -0.63 Total: -58.47 kcal Atomic # 8 Polarization: -31.47 SS G_CDS: 0.17 Total: -31.30 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -39.53 -6.46 -45.99 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354192932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.293 kcal (2) G-P(sol) polarization free energy of solvation -39.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds