Wall clock time and date at job start Sun Mar 29 2020 22:25:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30672 * 1 3 3 Si 1.86800 * 119.99861 * 2 1 4 4 H 1.48505 * 109.47053 * 240.00249 * 3 2 1 5 5 H 1.48498 * 109.47402 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47199 * 120.00373 * 3 2 1 7 7 C 1.40044 * 120.00122 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00329 * 179.97438 * 7 2 1 9 9 C 1.46382 * 119.99880 * 359.97438 * 7 2 1 10 10 O 1.21690 * 120.00041 * 359.97438 * 9 7 2 11 11 N 1.34775 * 120.00047 * 180.02562 * 9 7 2 12 12 C 1.46497 * 120.00041 * 179.97438 * 11 9 7 13 13 C 1.52999 * 109.47130 * 180.02562 * 12 11 9 14 14 N 1.46497 * 109.47130 * 179.97438 * 13 12 11 15 15 C 1.47057 * 125.40952 * 90.00073 * 14 13 12 16 16 C 1.54105 * 103.99235 * 179.97438 * 15 14 13 17 17 N 1.47394 * 103.70056 * 0.10684 * 16 15 14 18 18 C 1.33947 * 109.21036 * 359.88525 * 17 16 15 19 19 O 1.21594 * 123.03846 * 180.09410 * 18 17 16 20 20 H 0.96998 * 120.00249 * 359.97438 * 1 2 3 21 21 H 0.97005 * 120.00099 * 0.02562 * 11 9 7 22 22 H 1.09000 * 109.47188 * 59.99765 * 12 11 9 23 23 H 1.09002 * 109.47370 * 299.99891 * 12 11 9 24 24 H 1.09000 * 109.47340 * 59.99781 * 13 12 11 25 25 H 1.09001 * 109.47326 * 300.00351 * 13 12 11 26 26 H 1.09002 * 110.54831 * 298.59477 * 15 14 13 27 27 H 1.08997 * 110.54826 * 61.25951 * 15 14 13 28 28 H 1.08996 * 110.55034 * 118.66113 * 16 15 14 29 29 H 1.09001 * 110.54910 * 241.47819 * 16 15 14 30 30 H 0.97000 * 125.37712 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 3.0944 1.6965 -1.2126 5 1 1.2757 2.7465 0.0006 6 1 3.0945 1.6964 1.2124 7 6 2.0070 -1.2128 -0.0005 8 1 3.0869 -1.2128 -0.0010 9 6 1.2751 -2.4805 -0.0005 10 8 0.0582 -2.4805 0.0004 11 7 1.9489 -3.6477 -0.0005 12 6 1.2164 -4.9164 0.0000 13 6 2.2107 -6.0793 0.0005 14 7 1.4782 -7.3480 0.0017 15 6 1.0518 -8.0868 -1.1961 16 6 0.3352 -9.3292 -0.6323 17 7 0.4326 -9.1555 0.8282 18 6 1.0896 -8.0189 1.0940 19 8 1.3134 -7.6315 2.2246 20 1 -0.4850 0.8400 0.0004 21 1 2.9190 -3.6477 -0.0002 22 1 0.5894 -4.9743 -0.8897 23 1 0.5901 -4.9740 0.8903 24 1 2.8374 -6.0212 0.8905 25 1 2.8374 -6.0220 -0.8894 26 1 0.3637 -7.4864 -1.7912 27 1 1.9157 -8.3803 -1.7924 28 1 -0.7080 -9.3452 -0.9477 29 1 0.8449 -10.2402 -0.9460 30 1 0.0781 -9.7681 1.4914 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001354192932.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:25:13 Heat of formation + Delta-G solvation = -86.579336 kcal Electronic energy + Delta-G solvation = -15364.991398 eV Core-core repulsion = 12580.294392 eV Total energy + Delta-G solvation = -2784.697006 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -41.94711 -39.43765 -37.46565 -36.35288 -34.71756 -34.07344 -30.57862 -29.46082 -27.96811 -24.53158 -23.77769 -21.80469 -21.28877 -19.27506 -18.62037 -17.55986 -17.49585 -17.04735 -16.25750 -15.97416 -15.79768 -15.13389 -14.95316 -14.73927 -14.40944 -14.02198 -13.62170 -13.13098 -13.02417 -12.75229 -12.74225 -12.60620 -12.28728 -12.04727 -11.42362 -10.91836 -10.41338 -9.94294 -9.56947 -9.51715 -8.29799 -6.87160 1.41026 1.45468 1.52064 1.57942 2.04563 2.26355 2.46001 2.94722 3.30548 3.59064 3.61021 3.85333 3.96360 4.24600 4.39668 4.43544 4.67234 4.76806 4.89293 5.00208 5.10759 5.31660 5.63207 5.85581 6.15210 6.20166 6.24213 6.50505 6.85564 7.50801 7.53860 8.46893 8.66239 Molecular weight = 227.11amu Principal moments of inertia in cm(-1) A = 0.064048 B = 0.004932 C = 0.004906 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 437.066068 B = 5675.715731 C = 5706.471680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.825 5.825 2 C 0.026 3.974 3 Si 1.003 2.997 4 H -0.250 1.250 5 H -0.275 1.275 6 H -0.255 1.255 7 C -0.572 4.572 8 H 0.093 0.907 9 C 0.534 3.466 10 O -0.636 6.636 11 N -0.751 5.751 12 C 0.126 3.874 13 C 0.158 3.842 14 N -0.633 5.633 15 C 0.081 3.919 16 C 0.096 3.904 17 N -0.735 5.735 18 C 0.682 3.318 19 O -0.645 6.645 20 H 0.275 0.725 21 H 0.400 0.600 22 H 0.041 0.959 23 H 0.007 0.993 24 H 0.077 0.923 25 H 0.124 0.876 26 H 0.085 0.915 27 H 0.114 0.886 28 H 0.101 0.899 29 H 0.118 0.882 30 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.563 -17.071 -6.241 19.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.822 3.178 4 H -0.174 1.174 5 H -0.200 1.200 6 H -0.180 1.180 7 C -0.609 4.609 8 H 0.111 0.889 9 C 0.339 3.661 10 O -0.523 6.523 11 N -0.407 5.407 12 C 0.000 4.000 13 C 0.035 3.965 14 N -0.370 5.370 15 C -0.041 4.041 16 C -0.028 4.028 17 N -0.397 5.397 18 C 0.382 3.618 19 O -0.527 6.527 20 H 0.085 0.915 21 H 0.234 0.766 22 H 0.060 0.940 23 H 0.025 0.975 24 H 0.095 0.905 25 H 0.142 0.858 26 H 0.104 0.896 27 H 0.132 0.868 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges 4.705 -16.707 -5.742 18.282 hybrid contribution 0.020 0.490 0.539 0.729 sum 4.725 -16.218 -5.203 17.675 Atomic orbital electron populations 1.70199 1.09730 1.29098 1.36388 1.27055 0.95534 1.05191 0.91082 0.85003 0.78109 0.74326 0.80404 1.17351 1.20011 1.17951 1.21429 0.94953 0.89788 1.54692 0.88887 1.18718 0.86864 0.84432 0.76095 1.90552 1.16472 1.87963 1.57352 1.45638 1.09484 1.04254 1.81294 1.21196 0.95373 0.84856 0.98584 1.21214 0.92013 0.78447 1.04859 1.47107 1.59893 1.22960 1.07061 1.22817 1.01275 0.92234 0.87791 1.22728 1.03158 0.98810 0.78083 1.45171 1.60578 1.23739 1.10219 1.16367 0.79150 0.81975 0.84323 1.90926 1.64890 1.73296 1.23612 0.91533 0.76589 0.94036 0.97461 0.90461 0.85790 0.89621 0.86762 0.88092 0.86438 0.72212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.76 11.83 21.83 0.26 -51.51 16 2 C 0.03 1.49 5.50 85.30 0.47 1.96 16 3 Si 1.00 41.31 29.56 68.60 2.03 43.34 16 4 H -0.25 -9.50 7.11 99.48 0.71 -8.79 16 5 H -0.28 -10.98 7.11 99.48 0.71 -10.27 16 6 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 7 C -0.57 -33.00 9.54 24.83 0.24 -32.77 16 8 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 9 C 0.53 32.22 7.75 86.36 0.67 32.89 16 10 O -0.64 -44.65 15.02 -4.32 -0.06 -44.71 16 11 N -0.75 -34.89 5.55 -467.41 -2.59 -37.49 16 12 C 0.13 5.25 6.00 86.38 0.52 5.77 16 13 C 0.16 4.61 6.11 86.38 0.53 5.13 16 14 N -0.63 -16.77 2.96 -838.36 -2.48 -19.24 16 15 C 0.08 1.20 7.67 86.65 0.66 1.86 16 16 C 0.10 1.02 8.08 86.58 0.70 1.72 16 17 N -0.74 -14.70 6.39 -476.58 -3.04 -17.75 16 18 C 0.68 21.42 8.60 179.57 1.55 22.96 16 19 O -0.64 -27.61 17.53 -4.01 -0.07 -27.68 16 20 H 0.27 15.61 8.29 -92.71 -0.77 14.84 16 21 H 0.40 15.33 8.45 -92.70 -0.78 14.55 16 22 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 23 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 24 H 0.08 2.44 7.91 -2.39 -0.02 2.42 16 25 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 26 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.12 0.49 8.14 -2.39 -0.02 0.48 16 30 H 0.44 7.12 8.96 -92.71 -0.83 6.29 16 Total: -1.00 -91.82 267.88 -1.07 -92.89 By element: Atomic # 1 Polarization: 23.05 SS G_CDS: -0.44 Total: 22.61 kcal Atomic # 6 Polarization: 34.20 SS G_CDS: 5.33 Total: 39.53 kcal Atomic # 7 Polarization: -118.13 SS G_CDS: -7.86 Total: -125.98 kcal Atomic # 8 Polarization: -72.26 SS G_CDS: -0.14 Total: -72.39 kcal Atomic # 14 Polarization: 41.31 SS G_CDS: 2.03 Total: 43.34 kcal Total: -91.82 -1.07 -92.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001354192932.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.312 kcal (2) G-P(sol) polarization free energy of solvation -91.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds