Wall clock time and date at job start Sun Mar 29 2020 22:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99950 * 2 1 4 4 H 1.09000 * 109.46682 * 5.00009 * 3 2 1 5 5 C 1.50703 * 109.47001 * 125.00178 * 3 2 1 6 6 O 1.20819 * 119.99981 * 93.60022 * 5 3 2 7 7 O 1.34235 * 119.99424 * 273.59708 * 5 3 2 8 8 N 1.46901 * 109.46691 * 244.99731 * 3 2 1 9 9 C 1.47480 * 110.99345 * 164.32009 * 8 3 2 10 10 C 1.53512 * 87.93037 * 221.29562 * 9 8 3 11 11 O 1.42898 * 114.17518 * 272.38147 * 10 9 8 12 12 C 1.50703 * 114.17049 * 139.67514 * 10 9 8 13 13 H 1.08008 * 119.99900 * 266.16402 * 12 10 9 14 14 C 1.37870 * 120.00419 * 86.16007 * 12 10 9 15 15 N 1.31521 * 120.00245 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 119.99727 * 0.02562 * 14 12 10 17 17 H 1.48502 * 109.47252 * 90.00351 * 16 14 12 18 18 H 1.48498 * 109.47281 * 210.00114 * 16 14 12 19 19 H 1.48501 * 109.47091 * 330.00078 * 16 14 12 20 20 C 1.47485 * 110.99844 * 68.35268 * 8 3 2 21 21 H 1.07998 * 119.99658 * 180.02562 * 1 2 3 22 22 H 1.07997 * 119.99894 * 359.72225 * 1 2 3 23 23 H 1.08002 * 119.99895 * 179.97438 * 2 1 3 24 24 H 0.96702 * 116.99327 * 180.02562 * 7 5 3 25 25 H 1.08998 * 113.48011 * 336.06342 * 9 8 3 26 26 H 1.09001 * 113.47467 * 106.53940 * 9 8 3 27 27 H 0.96700 * 113.99859 * 273.84165 * 11 10 9 28 28 H 0.96996 * 119.99499 * 180.02562 * 15 14 12 29 29 H 1.09004 * 113.47475 * 253.46463 * 20 8 3 30 30 H 1.09003 * 113.47569 * 23.93340 * 20 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1316 0.0896 5 6 3.0205 1.3327 1.1639 6 8 4.1650 0.9759 1.0135 7 8 2.6012 1.7536 2.3676 8 7 2.8153 1.4364 -1.2552 9 6 3.2568 2.8281 -1.4636 10 6 2.8789 2.6678 -2.9428 11 8 3.9234 2.1344 -3.7592 12 6 2.2090 3.8769 -3.5431 13 1 1.1312 3.9427 -3.5636 14 6 2.9720 4.8992 -4.0661 15 7 2.3874 5.9547 -4.5895 16 14 4.8362 4.7852 -4.0313 17 1 5.3152 4.1264 -5.2730 18 1 5.4140 6.1502 -3.9407 19 1 5.2615 3.9885 -2.8524 20 6 1.9038 1.6131 -2.4012 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0045 23 1 1.8500 -0.9353 0.0004 24 1 3.2514 1.7538 3.0834 25 1 2.6461 3.5610 -0.9364 26 1 4.3249 2.9736 -1.3018 27 1 4.5361 2.8008 -4.0991 28 1 2.9243 6.6737 -4.9578 29 1 1.8251 0.7289 -3.0337 30 1 0.9320 2.0218 -2.1241 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588663511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:21 Heat of formation + Delta-G solvation = -56.889631 kcal Electronic energy + Delta-G solvation = -16191.855018 eV Core-core repulsion = 13376.152703 eV Total energy + Delta-G solvation = -2815.702315 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.55142 -39.17783 -36.01672 -35.48229 -33.59548 -32.47082 -29.22449 -26.61753 -25.26359 -23.54134 -21.47333 -19.72595 -19.24256 -18.00822 -17.38202 -16.63757 -16.24308 -15.68966 -15.32725 -14.55958 -13.86368 -13.78674 -13.29354 -13.03818 -12.81638 -12.27858 -12.17292 -11.84328 -11.44090 -11.16974 -11.00400 -10.71146 -10.50658 -10.32545 -10.02118 -9.58905 -9.28756 -8.95586 -8.60565 -8.25743 -6.37670 -4.42579 2.06278 2.45577 3.05666 3.07840 3.15462 3.20968 4.09858 4.52764 4.78967 4.82313 5.05253 5.28242 5.36459 5.47057 5.65186 5.79177 5.84291 6.03323 6.39944 6.47873 6.54115 6.59895 6.60039 6.76678 6.78383 7.24469 7.53634 8.06539 8.08304 8.63721 8.64682 9.21480 10.74512 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.008843 C = 0.008123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.799086 B = 3165.470421 C = 3446.380136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.140 4.140 3 C 0.085 3.915 4 H 0.083 0.917 5 C 0.486 3.514 6 O -0.492 6.492 7 O -0.520 6.520 8 N -0.446 5.446 9 C -0.040 4.040 10 C 0.207 3.793 11 O -0.546 6.546 12 C -0.535 4.535 13 H 0.089 0.911 14 C 0.079 3.921 15 N -0.880 5.880 16 Si 0.858 3.142 17 H -0.266 1.266 18 H -0.285 1.285 19 H -0.254 1.254 20 C 0.025 3.975 21 H 0.106 0.894 22 H 0.101 0.899 23 H 0.119 0.881 24 H 0.406 0.594 25 H 0.074 0.926 26 H 0.075 0.925 27 H 0.349 0.651 28 H 0.270 0.730 29 H 0.083 0.917 30 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.816 -7.175 10.175 12.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.158 4.158 3 C -0.025 4.025 4 H 0.101 0.899 5 C 0.326 3.674 6 O -0.377 6.377 7 O -0.332 6.332 8 N -0.170 5.170 9 C -0.169 4.169 10 C 0.166 3.834 11 O -0.357 6.357 12 C -0.573 4.573 13 H 0.107 0.893 14 C -0.126 4.126 15 N -0.515 5.515 16 Si 0.687 3.313 17 H -0.193 1.193 18 H -0.212 1.212 19 H -0.179 1.179 20 C -0.103 4.103 21 H 0.124 0.876 22 H 0.120 0.880 23 H 0.136 0.864 24 H 0.264 0.736 25 H 0.092 0.908 26 H 0.093 0.907 27 H 0.201 0.799 28 H 0.080 0.920 29 H 0.101 0.899 30 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -1.570 -8.196 9.913 12.958 hybrid contribution 1.115 1.262 0.502 1.758 sum -0.454 -6.934 10.415 12.520 Atomic orbital electron populations 1.23941 0.95383 1.02476 0.98804 1.22455 0.95472 0.96589 1.01315 1.21024 0.93380 0.98278 0.89820 0.89948 1.23244 0.87904 0.73103 0.83115 1.90705 1.20092 1.43052 1.83816 1.84554 1.48168 1.79678 1.20786 1.69165 1.23904 1.25281 0.98673 1.25118 1.01536 0.88249 1.02026 1.20001 0.85341 0.92040 0.86042 1.86473 1.42402 1.37791 1.68987 1.21274 0.95781 1.00284 1.39925 0.89339 1.25001 0.98648 0.95073 0.93875 1.69865 1.36052 1.07895 1.37738 0.87316 0.86202 0.77881 0.79890 1.19252 1.21200 1.17887 1.23952 0.95479 0.99649 0.91187 0.87552 0.88049 0.86354 0.73603 0.90758 0.90678 0.79916 0.91993 0.89858 0.90467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.92 14.32 29.01 0.42 -1.50 16 2 C -0.14 -1.94 8.45 -36.02 -0.30 -2.25 16 3 C 0.08 1.40 1.93 -70.01 -0.14 1.27 16 4 H 0.08 1.29 7.21 -51.93 -0.37 0.92 16 5 C 0.49 8.00 7.13 36.01 0.26 8.26 16 6 O -0.49 -9.68 17.39 -18.74 -0.33 -10.00 16 7 O -0.52 -6.55 13.42 -39.27 -0.53 -7.08 16 8 N -0.45 -9.02 5.75 -239.37 -1.38 -10.39 16 9 C -0.04 -0.88 6.18 -7.54 -0.05 -0.93 16 10 C 0.21 4.97 1.10 -91.24 -0.10 4.87 16 11 O -0.55 -13.69 13.32 -35.23 -0.47 -14.16 16 12 C -0.53 -14.37 9.26 -34.44 -0.32 -14.69 16 13 H 0.09 2.51 8.06 -52.48 -0.42 2.08 16 14 C 0.08 2.16 5.47 -17.82 -0.10 2.06 16 15 N -0.88 -25.34 13.96 55.43 0.77 -24.56 16 16 Si 0.86 20.14 24.41 -169.99 -4.15 15.99 16 17 H -0.27 -6.04 7.06 56.52 0.40 -5.64 16 18 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 19 H -0.25 -5.83 5.47 56.52 0.31 -5.52 16 20 C 0.03 0.52 6.55 -7.54 -0.05 0.47 16 21 H 0.11 0.98 8.06 -52.49 -0.42 0.56 16 22 H 0.10 1.11 7.84 -52.49 -0.41 0.69 16 23 H 0.12 1.62 8.06 -52.49 -0.42 1.20 16 24 H 0.41 3.22 9.10 45.56 0.41 3.63 16 25 H 0.07 1.56 7.63 -51.93 -0.40 1.17 16 26 H 0.07 1.74 7.12 -51.93 -0.37 1.37 16 27 H 0.35 8.42 3.17 45.56 0.14 8.57 16 28 H 0.27 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.08 1.66 8.14 -51.93 -0.42 1.24 16 30 H 0.08 1.45 7.75 -51.93 -0.40 1.05 16 LS Contribution 258.73 15.07 3.90 3.90 Total: -1.00 -31.88 258.73 -4.87 -36.75 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -2.32 Total: 12.00 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -0.38 Total: -2.44 kcal Atomic # 7 Polarization: -34.35 SS G_CDS: -0.60 Total: -34.96 kcal Atomic # 8 Polarization: -29.92 SS G_CDS: -1.32 Total: -31.24 kcal Atomic # 14 Polarization: 20.14 SS G_CDS: -4.15 Total: 15.99 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -31.88 -4.87 -36.75 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588663511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.140 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.750 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds