Wall clock time and date at job start Sun Mar 29 2020 22:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50705 * 119.99950 * 2 1 4 4 H 1.09000 * 109.46682 * 5.00009 * 3 2 1 5 5 C 1.50703 * 109.47001 * 125.00178 * 3 2 1 6 6 O 1.20819 * 119.99981 * 93.60022 * 5 3 2 7 7 O 1.34235 * 119.99424 * 273.59708 * 5 3 2 8 8 N 1.46901 * 109.46691 * 244.99731 * 3 2 1 9 9 C 1.47480 * 110.99345 * 164.32009 * 8 3 2 10 10 C 1.53512 * 87.93037 * 221.29562 * 9 8 3 11 11 O 1.42898 * 114.17518 * 272.38147 * 10 9 8 12 12 C 1.50703 * 114.17049 * 139.67514 * 10 9 8 13 13 H 1.08008 * 119.99900 * 266.16402 * 12 10 9 14 14 C 1.37870 * 120.00419 * 86.16007 * 12 10 9 15 15 N 1.31521 * 120.00245 * 180.02562 * 14 12 10 16 16 Si 1.86800 * 119.99727 * 0.02562 * 14 12 10 17 17 H 1.48502 * 109.47252 * 90.00351 * 16 14 12 18 18 H 1.48498 * 109.47281 * 210.00114 * 16 14 12 19 19 H 1.48501 * 109.47091 * 330.00078 * 16 14 12 20 20 C 1.47485 * 110.99844 * 68.35268 * 8 3 2 21 21 H 1.07998 * 119.99658 * 180.02562 * 1 2 3 22 22 H 1.07997 * 119.99894 * 359.72225 * 1 2 3 23 23 H 1.08002 * 119.99895 * 179.97438 * 2 1 3 24 24 H 0.96702 * 116.99327 * 180.02562 * 7 5 3 25 25 H 1.08998 * 113.48011 * 336.06342 * 9 8 3 26 26 H 1.09001 * 113.47467 * 106.53940 * 9 8 3 27 27 H 0.96700 * 113.99859 * 273.84165 * 11 10 9 28 28 H 0.96996 * 119.99499 * 180.02562 * 15 14 12 29 29 H 1.09004 * 113.47475 * 253.46463 * 20 8 3 30 30 H 1.09003 * 113.47569 * 23.93340 * 20 8 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 1 1.3585 2.1316 0.0896 5 6 3.0205 1.3327 1.1639 6 8 4.1650 0.9759 1.0135 7 8 2.6012 1.7536 2.3676 8 7 2.8153 1.4364 -1.2552 9 6 3.2568 2.8281 -1.4636 10 6 2.8789 2.6678 -2.9428 11 8 3.9234 2.1344 -3.7592 12 6 2.2090 3.8769 -3.5431 13 1 1.1312 3.9427 -3.5636 14 6 2.9720 4.8992 -4.0661 15 7 2.3874 5.9547 -4.5895 16 14 4.8362 4.7852 -4.0313 17 1 5.3152 4.1264 -5.2730 18 1 5.4140 6.1502 -3.9407 19 1 5.2615 3.9885 -2.8524 20 6 1.9038 1.6131 -2.4012 21 1 -0.5399 -0.9353 0.0004 22 1 -0.5400 0.9353 0.0045 23 1 1.8500 -0.9353 0.0004 24 1 3.2514 1.7538 3.0834 25 1 2.6461 3.5610 -0.9364 26 1 4.3249 2.9736 -1.3018 27 1 4.5361 2.8008 -4.0991 28 1 2.9243 6.6737 -4.9578 29 1 1.8251 0.7289 -3.0337 30 1 0.9320 2.0218 -2.1241 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588663511.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:21 Heat of formation + Delta-G solvation = -84.816755 kcal Electronic energy + Delta-G solvation = -16193.066029 eV Core-core repulsion = 13376.152703 eV Total energy + Delta-G solvation = -2816.913326 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -41.97784 -40.65895 -37.36262 -36.97302 -34.94791 -34.55228 -30.67504 -28.38777 -26.92821 -25.19362 -22.69893 -21.01306 -20.89089 -19.36470 -19.21945 -18.18487 -17.84081 -17.17815 -16.75305 -16.03379 -15.52922 -15.05807 -14.90525 -14.79262 -14.50216 -13.88123 -13.58166 -13.38056 -12.84021 -12.72249 -12.61459 -12.42891 -12.04761 -11.93929 -11.67150 -11.16039 -11.02416 -10.65226 -10.34121 -9.88820 -8.47060 -6.56242 0.96842 1.19160 1.27065 1.31629 1.33738 1.92397 2.13045 2.74754 3.05059 3.47272 3.66064 3.88484 3.94747 3.97669 4.26987 4.41635 4.49279 4.71481 4.84188 4.94838 4.99077 5.12370 5.26395 5.49470 5.58873 5.64875 5.95889 6.03469 6.49312 6.71577 6.95733 7.11458 8.68213 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.034188 B = 0.008843 C = 0.008123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 818.799086 B = 3165.470421 C = 3446.380136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C 0.080 3.920 4 H 0.093 0.907 5 C 0.493 3.507 6 O -0.532 6.532 7 O -0.507 6.507 8 N -0.455 5.455 9 C -0.031 4.031 10 C 0.186 3.814 11 O -0.554 6.554 12 C -0.540 4.540 13 H 0.062 0.938 14 C 0.030 3.970 15 N -0.922 5.922 16 Si 0.914 3.086 17 H -0.252 1.252 18 H -0.281 1.281 19 H -0.248 1.248 20 C 0.038 3.962 21 H 0.134 0.866 22 H 0.109 0.891 23 H 0.117 0.883 24 H 0.428 0.572 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.350 0.650 28 H 0.273 0.727 29 H 0.088 0.912 30 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.080 -8.204 11.369 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.187 4.187 3 C -0.029 4.029 4 H 0.111 0.889 5 C 0.334 3.666 6 O -0.420 6.420 7 O -0.320 6.320 8 N -0.179 5.179 9 C -0.161 4.161 10 C 0.146 3.854 11 O -0.365 6.365 12 C -0.578 4.578 13 H 0.080 0.920 14 C -0.172 4.172 15 N -0.560 5.560 16 Si 0.740 3.260 17 H -0.178 1.178 18 H -0.208 1.208 19 H -0.173 1.173 20 C -0.090 4.090 21 H 0.152 0.848 22 H 0.127 0.873 23 H 0.135 0.865 24 H 0.290 0.710 25 H 0.098 0.902 26 H 0.080 0.920 27 H 0.202 0.798 28 H 0.083 0.917 29 H 0.106 0.894 30 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -1.848 -9.235 11.140 14.587 hybrid contribution 1.045 1.568 0.215 1.896 sum -0.803 -7.667 11.355 13.724 Atomic orbital electron populations 1.24245 0.94466 1.04142 0.94621 1.22330 0.96186 0.95133 1.05101 1.21102 0.93322 1.00273 0.88205 0.88917 1.23215 0.87097 0.72222 0.84023 1.90696 1.21578 1.45085 1.84634 1.84490 1.48679 1.78532 1.20305 1.69039 1.24795 1.23555 1.00517 1.24899 1.00866 0.89903 1.00416 1.20183 0.86240 0.92409 0.86607 1.86468 1.42605 1.38042 1.69418 1.21440 0.94829 1.01549 1.39937 0.92016 1.25729 1.03144 0.94676 0.93603 1.69980 1.37871 1.08869 1.39240 0.86393 0.80884 0.78154 0.80600 1.17759 1.20750 1.17253 1.23839 0.95323 0.98641 0.91148 0.84847 0.87307 0.86529 0.71022 0.90213 0.92016 0.79784 0.91740 0.89355 0.89006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 14.32 67.78 0.97 -1.65 16 2 C -0.17 -4.26 8.45 25.65 0.22 -4.04 16 3 C 0.08 2.50 1.93 43.43 0.08 2.59 16 4 H 0.09 2.68 7.21 -2.39 -0.02 2.66 16 5 C 0.49 15.35 7.13 71.24 0.51 15.86 16 6 O -0.53 -20.40 17.39 21.98 0.38 -20.02 16 7 O -0.51 -11.43 13.42 -51.46 -0.69 -12.12 16 8 N -0.46 -17.77 5.75 -911.62 -5.25 -23.01 16 9 C -0.03 -1.36 6.18 83.58 0.52 -0.84 16 10 C 0.19 8.84 1.10 -11.19 -0.01 8.82 16 11 O -0.55 -27.30 13.32 -148.98 -1.98 -29.29 16 12 C -0.54 -29.21 9.26 25.60 0.24 -28.97 16 13 H 0.06 3.58 8.06 -2.91 -0.02 3.55 16 14 C 0.03 1.63 5.47 84.65 0.46 2.09 16 15 N -0.92 -53.88 13.96 21.45 0.30 -53.58 16 16 Si 0.91 41.43 24.41 68.60 1.67 43.11 16 17 H -0.25 -10.80 7.06 99.48 0.70 -10.09 16 18 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 19 H -0.25 -10.93 5.47 99.48 0.54 -10.39 16 20 C 0.04 1.52 6.55 83.58 0.55 2.07 16 21 H 0.13 1.85 8.06 -2.91 -0.02 1.83 16 22 H 0.11 1.94 7.84 -2.91 -0.02 1.92 16 23 H 0.12 2.97 8.06 -2.91 -0.02 2.95 16 24 H 0.43 5.61 9.10 -74.06 -0.67 4.94 16 25 H 0.08 3.29 7.63 -2.39 -0.02 3.27 16 26 H 0.06 2.81 7.12 -2.39 -0.02 2.80 16 27 H 0.35 16.47 3.17 -74.06 -0.23 16.24 16 28 H 0.27 14.89 8.31 -92.71 -0.77 14.12 16 29 H 0.09 3.38 8.14 -2.39 -0.02 3.36 16 30 H 0.09 3.30 7.75 -2.39 -0.02 3.28 16 Total: -1.00 -68.39 258.73 -1.94 -70.33 By element: Atomic # 1 Polarization: 28.58 SS G_CDS: 0.09 Total: 28.67 kcal Atomic # 6 Polarization: -7.61 SS G_CDS: 3.53 Total: -4.08 kcal Atomic # 7 Polarization: -71.65 SS G_CDS: -4.95 Total: -76.59 kcal Atomic # 8 Polarization: -59.14 SS G_CDS: -2.29 Total: -61.43 kcal Atomic # 14 Polarization: 41.43 SS G_CDS: 1.67 Total: 43.11 kcal Total: -68.39 -1.94 -70.33 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588663511.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.486 kcal (2) G-P(sol) polarization free energy of solvation -68.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds