Wall clock time and date at job start Sun Mar 29 2020 22:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47216 * 2 1 4 4 C 1.50701 * 109.46908 * 119.99637 * 2 1 3 5 5 H 1.08002 * 120.00221 * 119.99746 * 4 2 1 6 6 C 1.37877 * 119.99712 * 299.99850 * 4 2 1 7 7 N 1.31517 * 120.00355 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99705 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46977 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46955 * 120.00415 * 8 6 4 11 11 H 1.48500 * 109.46716 * 240.00206 * 8 6 4 12 12 N 1.46495 * 109.47303 * 239.99428 * 2 1 3 13 13 C 1.34783 * 120.00138 * 85.00074 * 12 2 1 14 14 O 1.21280 * 119.99508 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00171 * 179.97438 * 13 12 2 16 16 C 1.50699 * 115.55838 * 34.31295 * 15 13 12 17 17 O 1.20830 * 119.99693 * 145.68940 * 16 15 13 18 18 O 1.34230 * 120.00291 * 325.68477 * 16 15 13 19 19 C 1.53000 * 117.49604 * 180.02562 * 15 13 12 20 20 C 1.52997 * 117.49669 * 248.62535 * 15 13 12 21 21 H 1.08996 * 109.47337 * 300.00833 * 1 2 3 22 22 H 1.09000 * 109.46745 * 60.00780 * 1 2 3 23 23 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99824 * 179.97438 * 7 6 4 25 25 H 0.96998 * 120.00377 * 264.99922 * 12 2 1 26 26 H 0.96695 * 116.99690 * 180.02562 * 18 16 15 27 27 H 1.08990 * 117.49990 * 359.97438 * 19 15 13 28 28 H 1.09004 * 117.49237 * 214.97804 * 19 15 13 29 29 H 1.08999 * 117.49685 * 145.02383 * 20 15 13 30 30 H 1.08997 * 117.50044 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2391 2.4827 7 7 0.9427 0.8299 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.1472 -2.2861 3.6040 10 1 3.1471 -0.1854 4.8161 11 1 1.1676 -1.5862 4.8165 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1584 -2.4115 15 6 2.6501 -0.7288 -3.5874 16 6 2.2399 -2.1731 -3.7176 17 8 2.0228 -2.6433 -4.8092 18 8 2.1157 -2.9370 -2.6209 19 6 2.7746 0.0894 -4.8742 20 6 4.0319 -0.3366 -4.1143 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7081 1.1611 3.4843 25 1 2.2491 -1.6318 -1.1524 26 1 1.8507 -3.8573 -2.7547 27 1 2.4924 1.1412 -4.8311 28 1 2.5595 -0.4170 -5.8153 29 1 4.6442 -1.1231 -4.5553 30 1 4.5770 0.4355 -3.5714 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588987758.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:23 Heat of formation + Delta-G solvation = -106.138402 kcal Electronic energy + Delta-G solvation = -15974.574391 eV Core-core repulsion = 13156.736489 eV Total energy + Delta-G solvation = -2817.837902 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.75971 -38.84487 -36.76053 -35.63427 -34.63876 -32.35326 -29.11161 -25.89176 -25.22759 -22.63804 -22.49659 -20.42708 -19.44417 -18.59631 -17.34618 -16.30548 -15.80086 -15.26206 -15.08637 -14.50027 -14.25146 -13.83498 -13.45262 -12.63779 -12.27553 -11.78202 -11.68964 -11.53459 -11.26590 -11.12975 -10.98578 -10.87948 -10.58527 -10.46660 -10.27919 -10.23604 -9.15635 -9.03220 -8.55892 -7.91882 -6.12608 -4.21486 1.97240 2.76886 3.16491 3.23561 3.31303 3.34284 3.80128 3.93240 4.34948 4.60646 4.75513 5.09145 5.19143 5.24414 5.49453 5.82167 5.86575 6.06574 6.41309 6.82022 6.96946 7.14280 7.43043 7.56496 7.69843 7.83220 7.91220 8.14252 8.66972 8.76496 9.10948 9.45854 10.93549 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037769 B = 0.007433 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.170997 B = 3766.029958 C = 4043.593152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.262 3.738 3 H 0.049 0.951 4 C -0.531 4.531 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.283 1.283 12 N -0.692 5.692 13 C 0.538 3.462 14 O -0.548 6.548 15 C -0.182 4.182 16 C 0.526 3.474 17 O -0.515 6.515 18 O -0.503 6.503 19 C -0.113 4.113 20 C -0.123 4.123 21 H 0.091 0.909 22 H 0.014 0.986 23 H 0.027 0.973 24 H 0.264 0.736 25 H 0.399 0.601 26 H 0.414 0.586 27 H 0.123 0.877 28 H 0.114 0.886 29 H 0.108 0.892 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.164 -5.788 -10.013 12.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.570 4.570 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.522 5.522 8 Si 0.730 3.270 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 N -0.343 5.343 13 C 0.321 3.679 14 O -0.427 6.427 15 C -0.186 4.186 16 C 0.368 3.632 17 O -0.403 6.403 18 O -0.316 6.316 19 C -0.150 4.150 20 C -0.160 4.160 21 H 0.110 0.890 22 H 0.033 0.967 23 H 0.046 0.954 24 H 0.074 0.926 25 H 0.236 0.764 26 H 0.274 0.726 27 H 0.141 0.859 28 H 0.132 0.868 29 H 0.126 0.874 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.914 -4.583 -10.077 11.742 hybrid contribution 0.110 -1.648 0.897 1.880 sum 4.024 -6.232 -9.180 11.803 Atomic orbital electron populations 1.22080 0.98372 0.99199 1.00925 1.18814 0.91140 0.94007 0.79977 0.93291 1.21249 1.32325 1.13194 0.90185 0.91920 1.24895 0.94837 0.94974 0.99062 1.69916 1.35948 1.22519 1.23774 0.86385 0.78605 0.79534 0.82523 1.19706 1.20873 1.20886 1.46685 1.63468 1.14495 1.09633 1.18843 0.79050 0.86762 0.83262 1.90670 1.51769 1.15562 1.84704 1.21291 1.07105 0.90186 1.00051 1.21868 0.72611 0.87182 0.81493 1.90692 1.47190 1.74182 1.28257 1.84399 1.81086 1.28370 1.37709 1.23141 0.98679 1.00982 0.92200 1.23112 0.88369 1.03362 1.01204 0.89034 0.96683 0.95405 0.92627 0.76352 0.72552 0.85917 0.86802 0.87369 0.86520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.71 9.26 37.16 0.34 -3.37 16 2 C 0.26 6.75 2.56 -69.08 -0.18 6.57 16 3 H 0.05 1.44 7.58 -51.93 -0.39 1.04 16 4 C -0.53 -14.13 8.73 -34.44 -0.30 -14.43 16 5 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.88 -24.85 11.32 55.43 0.63 -24.22 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 10 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 N -0.69 -14.93 4.88 -54.93 -0.27 -15.20 16 13 C 0.54 11.03 7.35 -10.98 -0.08 10.95 16 14 O -0.55 -13.02 15.92 5.56 0.09 -12.93 16 15 C -0.18 -2.85 2.57 -156.81 -0.40 -3.25 16 16 C 0.53 7.74 7.86 36.01 0.28 8.03 16 17 O -0.51 -8.18 17.02 -18.75 -0.32 -8.50 16 18 O -0.50 -6.34 10.51 -39.26 -0.41 -6.75 16 19 C -0.11 -1.48 9.55 -26.75 -0.26 -1.73 16 20 C -0.12 -1.50 9.94 -26.75 -0.27 -1.77 16 21 H 0.09 2.48 6.07 -51.93 -0.32 2.17 16 22 H 0.01 0.35 8.14 -51.93 -0.42 -0.07 16 23 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 25 H 0.40 7.76 5.70 -40.82 -0.23 7.53 16 26 H 0.41 3.07 9.10 45.56 0.41 3.48 16 27 H 0.12 1.66 7.67 -51.93 -0.40 1.26 16 28 H 0.11 1.34 7.67 -51.93 -0.40 0.94 16 29 H 0.11 1.08 8.14 -51.93 -0.42 0.65 16 30 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 266.02 15.07 4.01 4.01 Total: -1.00 -32.23 266.02 -4.80 -37.03 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: -2.55 Total: 8.36 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -0.95 Total: 2.66 kcal Atomic # 7 Polarization: -39.77 SS G_CDS: 0.36 Total: -39.41 kcal Atomic # 8 Polarization: -27.54 SS G_CDS: -0.64 Total: -28.19 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -32.23 -4.80 -37.03 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987758.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.106 kcal (2) G-P(sol) polarization free energy of solvation -32.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.033 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds