Wall clock time and date at job start Sun Mar 29 2020 22:13:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47216 * 2 1 4 4 C 1.50701 * 109.46908 * 119.99637 * 2 1 3 5 5 H 1.08002 * 120.00221 * 119.99746 * 4 2 1 6 6 C 1.37877 * 119.99712 * 299.99850 * 4 2 1 7 7 N 1.31517 * 120.00355 * 0.02562 * 6 4 2 8 8 Si 1.86808 * 119.99705 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46977 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.46955 * 120.00415 * 8 6 4 11 11 H 1.48500 * 109.46716 * 240.00206 * 8 6 4 12 12 N 1.46495 * 109.47303 * 239.99428 * 2 1 3 13 13 C 1.34783 * 120.00138 * 85.00074 * 12 2 1 14 14 O 1.21280 * 119.99508 * 0.02562 * 13 12 2 15 15 C 1.50702 * 120.00171 * 179.97438 * 13 12 2 16 16 C 1.50699 * 115.55838 * 34.31295 * 15 13 12 17 17 O 1.20830 * 119.99693 * 145.68940 * 16 15 13 18 18 O 1.34230 * 120.00291 * 325.68477 * 16 15 13 19 19 C 1.53000 * 117.49604 * 180.02562 * 15 13 12 20 20 C 1.52997 * 117.49669 * 248.62535 * 15 13 12 21 21 H 1.08996 * 109.47337 * 300.00833 * 1 2 3 22 22 H 1.09000 * 109.46745 * 60.00780 * 1 2 3 23 23 H 1.09000 * 109.47216 * 180.02562 * 1 2 3 24 24 H 0.97003 * 119.99824 * 179.97438 * 7 6 4 25 25 H 0.96998 * 120.00377 * 264.99922 * 12 2 1 26 26 H 0.96695 * 116.99690 * 180.02562 * 18 16 15 27 27 H 1.08990 * 117.49990 * 359.97438 * 19 15 13 28 28 H 1.09004 * 117.49237 * 214.97804 * 19 15 13 29 29 H 1.08999 * 117.49685 * 145.02383 * 20 15 13 30 30 H 1.08997 * 117.50044 * 359.97438 * 20 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1316 6 6 1.6992 -0.2391 2.4827 7 7 0.9427 0.8299 2.6033 8 14 2.3224 -1.1193 4.0081 9 1 3.1472 -2.2861 3.6040 10 1 3.1471 -0.1854 4.8161 11 1 1.1676 -1.5862 4.8165 12 7 2.0184 -0.6907 -1.1960 13 6 2.1471 -0.0184 -2.3571 14 8 1.8591 1.1584 -2.4115 15 6 2.6501 -0.7288 -3.5874 16 6 2.2399 -2.1731 -3.7176 17 8 2.0228 -2.6433 -4.8092 18 8 2.1157 -2.9370 -2.6209 19 6 2.7746 0.0894 -4.8742 20 6 4.0319 -0.3366 -4.1143 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5137 -0.8901 23 1 -0.3633 -1.0277 0.0005 24 1 0.7081 1.1611 3.4843 25 1 2.2491 -1.6318 -1.1524 26 1 1.8507 -3.8573 -2.7547 27 1 2.4924 1.1412 -4.8311 28 1 2.5595 -0.4170 -5.8153 29 1 4.6442 -1.1231 -4.5553 30 1 4.5770 0.4355 -3.5714 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001588987758.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:22 Heat of formation + Delta-G solvation = -129.680926 kcal Electronic energy + Delta-G solvation = -15975.595271 eV Core-core repulsion = 13156.736489 eV Total energy + Delta-G solvation = -2818.858783 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.97410 -40.34169 -37.96876 -36.90151 -36.41885 -34.30164 -31.03512 -27.41342 -27.07421 -24.06968 -23.59829 -22.15629 -20.94868 -19.94197 -18.65504 -18.03931 -17.18608 -16.97777 -16.48522 -16.10236 -15.68045 -15.21868 -14.98394 -14.45849 -13.92115 -13.60281 -13.01496 -12.91837 -12.79036 -12.72350 -12.55537 -12.42678 -12.28767 -12.11906 -11.76116 -11.63901 -11.09994 -10.82293 -10.59666 -9.78107 -8.17383 -6.34700 0.84946 1.45364 1.46286 1.51329 1.58815 1.90253 2.30825 2.51406 2.64821 3.13156 3.43416 3.64414 3.86145 4.13272 4.56187 4.65258 4.74098 4.83887 4.90872 5.07365 5.08106 5.40635 5.45208 5.60005 5.68049 5.89196 6.08477 6.72295 6.84796 6.92188 7.32105 7.50874 8.89352 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.037769 B = 0.007433 C = 0.006923 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.170997 B = 3766.029958 C = 4043.593152 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.267 3.733 3 H 0.003 0.997 4 C -0.545 4.545 5 H 0.073 0.927 6 C 0.014 3.986 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.259 1.259 10 H -0.283 1.283 11 H -0.279 1.279 12 N -0.691 5.691 13 C 0.535 3.465 14 O -0.588 6.588 15 C -0.205 4.205 16 C 0.535 3.465 17 O -0.527 6.527 18 O -0.506 6.506 19 C -0.104 4.104 20 C -0.098 4.098 21 H 0.069 0.931 22 H 0.011 0.989 23 H 0.039 0.961 24 H 0.266 0.734 25 H 0.410 0.590 26 H 0.437 0.563 27 H 0.113 0.887 28 H 0.132 0.868 29 H 0.140 0.860 30 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -7.665 -10.436 13.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.164 3.836 3 H 0.021 0.979 4 C -0.583 4.583 5 H 0.091 0.909 6 C -0.186 4.186 7 N -0.556 5.556 8 Si 0.798 3.202 9 H -0.183 1.183 10 H -0.209 1.209 11 H -0.204 1.204 12 N -0.343 5.343 13 C 0.321 3.679 14 O -0.470 6.470 15 C -0.209 4.209 16 C 0.378 3.622 17 O -0.417 6.417 18 O -0.321 6.321 19 C -0.142 4.142 20 C -0.135 4.135 21 H 0.088 0.912 22 H 0.030 0.970 23 H 0.058 0.942 24 H 0.075 0.925 25 H 0.250 0.750 26 H 0.301 0.699 27 H 0.132 0.868 28 H 0.150 0.850 29 H 0.158 0.842 30 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 5.050 -6.514 -10.520 13.364 hybrid contribution -0.249 -1.030 1.004 1.459 sum 4.801 -7.543 -9.516 13.058 Atomic orbital electron populations 1.21908 0.98278 0.99462 0.99640 1.18443 0.91204 0.92109 0.81857 0.97928 1.21535 1.32570 1.13518 0.90654 0.90928 1.25807 0.94853 0.95588 1.02307 1.70056 1.36970 1.23950 1.24607 0.85275 0.78106 0.78544 0.78280 1.18317 1.20871 1.20435 1.46474 1.63775 1.14934 1.09068 1.19540 0.77817 0.86415 0.84165 1.90644 1.53256 1.17565 1.85582 1.21162 1.10269 0.90961 0.98549 1.21529 0.72259 0.86776 0.81597 1.90694 1.47913 1.74377 1.28683 1.84317 1.80764 1.30073 1.36944 1.23244 0.98966 1.00278 0.91665 1.23336 0.87238 1.03637 0.99326 0.91194 0.97020 0.94168 0.92494 0.74984 0.69865 0.86824 0.84963 0.84185 0.86512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.90 9.26 71.98 0.67 -6.24 16 2 C 0.27 14.04 2.56 44.25 0.11 14.16 16 3 H 0.00 0.17 7.58 -2.39 -0.02 0.15 16 4 C -0.54 -28.93 8.73 25.60 0.22 -28.70 16 5 H 0.07 3.63 7.74 -2.91 -0.02 3.60 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -52.40 11.32 21.45 0.24 -52.16 16 8 Si 0.97 41.65 29.54 68.60 2.03 43.68 16 9 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 10 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 11 H -0.28 -11.68 7.11 99.48 0.71 -10.97 16 12 N -0.69 -29.75 4.88 -446.09 -2.18 -31.93 16 13 C 0.54 21.94 7.35 87.66 0.64 22.59 16 14 O -0.59 -28.71 15.92 -3.03 -0.05 -28.76 16 15 C -0.20 -6.09 2.57 -53.67 -0.14 -6.23 16 16 C 0.54 14.53 7.86 71.24 0.56 15.09 16 17 O -0.53 -15.37 17.02 21.95 0.37 -14.99 16 18 O -0.51 -11.52 10.51 -51.42 -0.54 -12.06 16 19 C -0.10 -2.53 9.55 30.58 0.29 -2.24 16 20 C -0.10 -2.13 9.94 30.58 0.30 -1.83 16 21 H 0.07 3.90 6.07 -2.39 -0.01 3.89 16 22 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 23 H 0.04 1.90 8.14 -2.39 -0.02 1.88 16 24 H 0.27 14.29 8.31 -92.71 -0.77 13.52 16 25 H 0.41 15.53 5.70 -92.71 -0.53 15.00 16 26 H 0.44 5.24 9.10 -74.06 -0.67 4.57 16 27 H 0.11 2.98 7.67 -2.39 -0.02 2.96 16 28 H 0.13 2.74 7.67 -2.38 -0.02 2.72 16 29 H 0.14 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -69.89 266.02 2.97 -66.92 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: -0.02 Total: 21.49 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: 3.11 Total: 7.81 kcal Atomic # 7 Polarization: -82.15 SS G_CDS: -1.94 Total: -84.09 kcal Atomic # 8 Polarization: -55.60 SS G_CDS: -0.22 Total: -55.81 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 2.03 Total: 43.68 kcal Total: -69.89 2.97 -66.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588987758.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.762 kcal (2) G-P(sol) polarization free energy of solvation -69.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.650 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds