Wall clock time and date at job start Sun Mar 29 2020 22:13:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.46986 * 2 1 4 4 C 1.50698 * 109.46858 * 119.99646 * 2 1 3 5 5 H 1.08005 * 119.99772 * 119.99772 * 4 2 1 6 6 C 1.37876 * 120.00330 * 300.00060 * 4 2 1 7 7 N 1.31512 * 119.99775 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 120.00006 * 179.97438 * 6 4 2 9 9 H 1.48504 * 109.47112 * 60.00015 * 8 6 4 10 10 H 1.48499 * 109.47003 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47269 * 299.99998 * 8 6 4 12 12 C 1.50697 * 109.46930 * 239.99593 * 2 1 3 13 13 O 1.21278 * 120.00140 * 274.54204 * 12 2 1 14 14 N 1.34779 * 119.99998 * 94.54061 * 12 2 1 15 15 C 1.47067 * 136.05508 * 4.85071 * 14 12 2 16 16 C 1.53239 * 88.08310 * 207.20261 * 15 14 12 17 17 C 1.47063 * 136.05950 * 185.22336 * 14 12 2 18 18 H 1.08998 * 113.46618 * 267.68230 * 17 14 12 19 19 C 1.50697 * 113.46880 * 38.06423 * 17 14 12 20 20 O 1.20824 * 119.99780 * 359.97438 * 19 17 14 21 21 O 1.34232 * 120.00313 * 180.02562 * 19 17 14 22 22 H 1.09000 * 109.46951 * 305.97714 * 1 2 3 23 23 H 1.09005 * 109.46894 * 65.97197 * 1 2 3 24 24 H 1.08997 * 109.47204 * 185.97327 * 1 2 3 25 25 H 0.96997 * 119.99732 * 180.02562 * 7 6 4 26 26 H 1.09001 * 113.47093 * 321.93658 * 15 14 12 27 27 H 1.09002 * 113.46823 * 92.37639 * 15 14 12 28 28 H 1.09001 * 114.32721 * 220.47204 * 16 15 14 29 29 H 1.09003 * 114.01602 * 87.71697 * 16 15 14 30 30 H 0.96699 * 117.00431 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1314 6 6 1.6992 -0.2393 2.4828 7 7 0.9428 0.8297 2.6033 8 14 2.3213 -1.1202 4.0080 9 1 3.8063 -1.1209 4.0082 10 1 1.8269 -0.4197 5.2204 11 1 1.8257 -2.5201 4.0078 12 6 2.0323 -0.7105 -1.2304 13 8 2.1560 -1.9169 -1.2260 14 7 2.3441 -0.0052 -2.3358 15 6 2.4145 1.4182 -2.6988 16 6 2.1278 1.0100 -4.1477 17 6 2.7571 -0.3204 -3.7116 18 1 3.8386 -0.3538 -3.8432 19 6 2.0629 -1.5290 -4.2846 20 8 1.2553 -2.1336 -3.6197 21 8 2.3425 -1.9344 -5.5333 22 1 -0.3633 0.6037 0.8316 23 1 -0.3633 0.4185 -0.9387 24 1 -0.3633 -1.0221 0.1069 25 1 0.7087 1.1613 3.4843 26 1 1.6217 2.0195 -2.2538 27 1 3.4038 1.8537 -2.5581 28 1 2.7080 1.5563 -4.8913 29 1 1.0667 0.9448 -4.3886 30 1 1.8723 -2.7149 -5.8571 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592211425.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:13:15 Heat of formation + Delta-G solvation = -87.085038 kcal Electronic energy + Delta-G solvation = -16106.188794 eV Core-core repulsion = 13289.177107 eV Total energy + Delta-G solvation = -2817.011686 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.74771 -38.91950 -37.06919 -35.82938 -33.65598 -30.69044 -28.99984 -27.39754 -25.15662 -23.04395 -22.28942 -20.73708 -18.38800 -18.00277 -16.86720 -16.28643 -16.18844 -15.24184 -14.98284 -14.27986 -14.04451 -13.38500 -12.82450 -12.74277 -12.57916 -12.17438 -11.77625 -11.46535 -11.35524 -11.17109 -10.95436 -10.68861 -10.63797 -10.25448 -10.11545 -9.98991 -8.99826 -8.55201 -8.30619 -8.24528 -6.03631 -4.07169 2.36877 2.94580 3.35914 3.38269 3.39257 3.48529 3.85422 4.24795 4.46100 4.90373 5.11000 5.24569 5.30026 5.39045 5.55642 5.69856 5.80994 6.11068 6.49676 6.62947 6.76436 6.92967 7.05093 7.51921 7.78426 7.98715 8.06834 8.20917 8.47085 8.96473 9.26544 9.57296 11.04119 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.043905 B = 0.007490 C = 0.006991 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.591334 B = 3737.329733 C = 4004.305495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.045 3.955 3 H 0.043 0.957 4 C -0.503 4.503 5 H 0.066 0.934 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.901 3.099 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.275 1.275 12 C 0.552 3.448 13 O -0.522 6.522 14 N -0.642 5.642 15 C 0.105 3.895 16 C -0.137 4.137 17 C 0.133 3.867 18 H 0.119 0.881 19 C 0.462 3.538 20 O -0.473 6.473 21 O -0.524 6.524 22 H 0.090 0.910 23 H 0.010 0.990 24 H 0.037 0.963 25 H 0.262 0.738 26 H 0.087 0.913 27 H 0.086 0.914 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.749 3.581 -14.406 15.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.023 3.977 3 H 0.061 0.939 4 C -0.541 4.541 5 H 0.084 0.916 6 C -0.140 4.140 7 N -0.533 5.533 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.212 1.212 11 H -0.201 1.201 12 C 0.345 3.655 13 O -0.395 6.395 14 N -0.384 5.384 15 C -0.018 4.018 16 C -0.175 4.175 17 C 0.027 3.973 18 H 0.136 0.864 19 C 0.300 3.700 20 O -0.356 6.356 21 O -0.336 6.336 22 H 0.109 0.891 23 H 0.029 0.971 24 H 0.056 0.944 25 H 0.072 0.928 26 H 0.105 0.895 27 H 0.104 0.896 28 H 0.116 0.884 29 H 0.115 0.885 30 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges 2.631 3.033 -13.647 14.226 hybrid contribution 0.070 -1.023 0.559 1.168 sum 2.701 2.010 -13.088 13.514 Atomic orbital electron populations 1.21643 0.95915 1.01119 0.99511 1.18786 0.94320 0.96357 0.88194 0.93927 1.20988 1.31568 1.12427 0.89130 0.91617 1.24918 0.95010 0.95024 0.99011 1.69875 1.36766 1.22959 1.23717 0.86495 0.79156 0.79870 0.81568 1.20212 1.21220 1.20094 1.21896 0.74384 0.87514 0.81708 1.90578 1.52258 1.14990 1.81653 1.50214 1.71309 1.07967 1.08923 1.22755 1.02577 0.84577 0.91869 1.23428 1.02391 0.93638 0.98024 1.22172 0.99707 0.90495 0.84946 0.86365 1.23643 0.81411 0.85720 0.79181 1.90848 1.31782 1.53901 1.59118 1.84502 1.67275 1.49511 1.32286 0.89146 0.97140 0.94429 0.92816 0.89454 0.89550 0.88417 0.88535 0.73597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 8.86 37.16 0.33 -2.81 16 2 C 0.04 1.17 2.56 -92.92 -0.24 0.93 16 3 H 0.04 1.11 7.77 -51.93 -0.40 0.70 16 4 C -0.50 -14.72 8.31 -34.44 -0.29 -15.00 16 5 H 0.07 2.02 7.24 -52.48 -0.38 1.64 16 6 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 7 N -0.89 -25.46 11.39 55.43 0.63 -24.83 16 8 Si 0.90 22.13 29.54 -169.99 -5.02 17.11 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.55 13.74 6.53 -10.99 -0.07 13.67 16 13 O -0.52 -14.95 15.00 -15.22 -0.23 -15.17 16 14 N -0.64 -12.19 3.48 -178.99 -0.62 -12.81 16 15 C 0.11 1.38 8.13 -8.64 -0.07 1.31 16 16 C -0.14 -1.43 8.00 -26.35 -0.21 -1.64 16 17 C 0.13 1.93 4.57 -73.56 -0.34 1.60 16 18 H 0.12 1.43 8.14 -51.93 -0.42 1.00 16 19 C 0.46 7.53 7.81 36.00 0.28 7.81 16 20 O -0.47 -10.22 15.19 -25.71 -0.39 -10.61 16 21 O -0.52 -6.15 13.42 -39.26 -0.53 -6.68 16 22 H 0.09 2.40 6.25 -51.93 -0.32 2.07 16 23 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 24 H 0.04 0.99 8.14 -51.93 -0.42 0.57 16 25 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 26 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.10 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.10 1.04 8.11 -51.93 -0.42 0.62 16 30 H 0.41 3.19 9.10 45.56 0.41 3.60 16 LS Contribution 265.07 15.07 3.99 3.99 Total: -1.00 -36.77 265.07 -5.65 -42.41 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: -2.79 Total: -0.92 kcal Atomic # 6 Polarization: 8.20 SS G_CDS: -0.70 Total: 7.51 kcal Atomic # 7 Polarization: -37.65 SS G_CDS: 0.01 Total: -37.64 kcal Atomic # 8 Polarization: -31.32 SS G_CDS: -1.15 Total: -32.47 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.11 kcal Total LS contribution 3.99 Total: 3.99 kcal Total: -36.77 -5.65 -42.41 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592211425.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.671 kcal (2) G-P(sol) polarization free energy of solvation -36.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds