Wall clock time and date at job start Sun Mar 29 2020 21:53:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30674 * 1 3 3 Si 1.86803 * 119.99936 * 2 1 4 4 H 1.48498 * 109.46867 * 269.99872 * 3 2 1 5 5 H 1.48501 * 109.47216 * 29.99729 * 3 2 1 6 6 H 1.48499 * 109.47135 * 150.00070 * 3 2 1 7 7 C 1.40050 * 120.00151 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99772 * 179.97438 * 7 2 1 9 9 C 1.46373 * 120.00087 * 0.02562 * 7 2 1 10 10 O 1.21693 * 119.99840 * 359.97438 * 9 7 2 11 11 N 1.34777 * 120.00147 * 179.97438 * 9 7 2 12 12 C 1.46498 * 119.99828 * 180.27610 * 11 9 7 13 13 H 1.09004 * 109.47372 * 34.71852 * 12 11 9 14 14 C 1.52999 * 109.46963 * 154.72290 * 12 11 9 15 15 C 1.52997 * 109.47080 * 294.99494 * 14 12 11 16 16 C 1.52999 * 117.50102 * 243.74996 * 15 14 12 17 17 C 1.53008 * 117.49985 * 175.08752 * 15 14 12 18 18 C 1.50701 * 109.46815 * 274.72090 * 12 11 9 19 19 O 1.20822 * 120.00228 * 0.02562 * 18 12 11 20 20 O 1.34236 * 119.99592 * 180.02562 * 18 12 11 21 21 H 0.96991 * 119.99824 * 0.02562 * 1 2 3 22 22 H 0.97001 * 119.99727 * 359.97438 * 11 9 7 23 23 H 1.08997 * 109.47492 * 54.99915 * 14 12 11 24 24 H 1.09007 * 109.47243 * 174.99697 * 14 12 11 25 25 H 1.08997 * 115.55191 * 29.42272 * 15 14 12 26 26 H 1.09002 * 117.49948 * 0.02562 * 16 15 14 27 27 H 1.08997 * 117.50220 * 145.02017 * 16 15 14 28 28 H 1.08993 * 117.49823 * 214.97918 * 17 15 14 29 29 H 1.08994 * 117.49683 * 359.97438 * 17 15 14 30 30 H 0.96705 * 116.99216 * 179.97438 * 20 18 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.4882 2.0464 -1.4001 5 1 1.4382 2.6527 0.7000 6 1 3.5383 1.4402 0.7000 7 6 2.0070 -1.2129 0.0005 8 1 3.0870 -1.2128 0.0001 9 6 1.2752 -2.4805 0.0005 10 8 0.0583 -2.4805 0.0005 11 7 1.9491 -3.6477 0.0005 12 6 1.2166 -4.9164 -0.0056 13 1 0.3058 -4.8073 -0.5944 14 6 2.0938 -6.0088 -0.6205 15 6 2.3545 -5.6849 -2.0929 16 6 1.8068 -6.6587 -3.1382 17 6 3.3109 -6.6009 -2.8592 18 6 0.8583 -5.2963 1.4081 19 8 1.1812 -4.5805 2.3263 20 8 0.1804 -6.4300 1.6470 21 1 -0.4849 0.8400 -0.0004 22 1 2.9191 -3.6476 0.0002 23 1 3.0423 -6.0571 -0.0857 24 1 1.5845 -6.9695 -0.5445 25 1 2.3609 -4.6250 -2.3471 26 1 1.2604 -7.5300 -2.7769 27 1 1.4533 -6.2396 -4.0802 28 1 3.9461 -6.1437 -3.6178 29 1 3.7547 -7.4340 -2.3143 30 1 -0.0263 -6.6316 2.5699 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001601060692.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:10 Heat of formation + Delta-G solvation = -141.434935 kcal Electronic energy + Delta-G solvation = -15778.156097 eV Core-core repulsion = 12958.787622 eV Total energy + Delta-G solvation = -2819.368475 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 227.099 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.45300 -39.41362 -38.32309 -37.04570 -35.42663 -34.50763 -31.43259 -28.26397 -26.35272 -23.16208 -22.96072 -21.54803 -21.18830 -19.38170 -19.03284 -17.69203 -17.58877 -16.78407 -16.45011 -16.01946 -15.78432 -15.05936 -14.51356 -14.43366 -14.08020 -13.52885 -12.99479 -12.93836 -12.76698 -12.63504 -12.50551 -12.34819 -12.24868 -12.03532 -11.68149 -11.05140 -10.93834 -10.75871 -9.94881 -9.69145 -8.31658 -6.87823 1.23071 1.38841 1.40633 1.56029 1.98886 2.24275 2.52208 2.95310 3.01039 3.62312 3.71424 3.92094 4.08573 4.24425 4.30118 4.45729 4.71412 4.86337 4.90829 4.94498 5.12413 5.30489 5.35479 5.43516 5.59835 5.83884 6.05437 6.20732 6.84711 7.03472 7.44564 8.44222 8.64365 Molecular weight = 227.10amu Principal moments of inertia in cm(-1) A = 0.025572 B = 0.008177 C = 0.006788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1094.698856 B = 3423.349688 C = 4123.731919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.027 3.973 3 Si 0.999 3.001 4 H -0.257 1.257 5 H -0.274 1.274 6 H -0.251 1.251 7 C -0.570 4.570 8 H 0.088 0.912 9 C 0.545 3.455 10 O -0.629 6.629 11 N -0.728 5.728 12 C 0.168 3.832 13 H 0.094 0.906 14 C -0.069 4.069 15 C -0.172 4.172 16 C -0.179 4.179 17 C -0.160 4.160 18 C 0.464 3.536 19 O -0.548 6.548 20 O -0.507 6.507 21 H 0.275 0.725 22 H 0.400 0.600 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.086 0.914 26 H 0.108 0.892 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.421 0.579 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.834 -12.598 -3.503 14.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.450 5.450 2 C -0.188 4.188 3 Si 0.818 3.182 4 H -0.181 1.181 5 H -0.199 1.199 6 H -0.174 1.174 7 C -0.607 4.607 8 H 0.106 0.894 9 C 0.350 3.650 10 O -0.516 6.516 11 N -0.383 5.383 12 C 0.059 3.941 13 H 0.111 0.889 14 C -0.107 4.107 15 C -0.191 4.191 16 C -0.216 4.216 17 C -0.197 4.197 18 C 0.305 3.695 19 O -0.437 6.437 20 O -0.319 6.319 21 H 0.084 0.916 22 H 0.234 0.766 23 H 0.104 0.896 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.126 0.874 27 H 0.109 0.891 28 H 0.117 0.883 29 H 0.129 0.871 30 H 0.282 0.718 Dipole moment (debyes) X Y Z Total from point charges 5.967 -12.251 -3.655 14.108 hybrid contribution 0.113 0.823 0.888 1.216 sum 6.080 -11.428 -2.767 13.237 Atomic orbital electron populations 1.70184 1.09529 1.28973 1.36336 1.27000 0.95573 1.05033 0.91192 0.85005 0.78674 0.74946 0.79581 1.18148 1.19888 1.17408 1.21408 0.94797 0.89990 1.54486 0.89394 1.18568 0.86802 0.84188 0.75417 1.90552 1.16159 1.87712 1.57167 1.45653 1.09249 1.03316 1.80040 1.20246 0.98900 0.87153 0.87826 0.88876 1.21300 0.99316 0.96222 0.93812 1.22161 1.07444 0.97153 0.92324 1.23156 0.97202 1.01373 0.99852 1.23047 0.92429 1.01679 1.02553 1.24879 0.73260 0.77530 0.93845 1.90685 1.52866 1.52359 1.47792 1.84498 1.68957 1.40478 1.37977 0.91552 0.76563 0.89578 0.87540 0.89601 0.87360 0.89104 0.88334 0.87059 0.71790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -51.31 11.83 21.84 0.26 -51.05 16 2 C 0.03 1.54 5.50 85.30 0.47 2.01 16 3 Si 1.00 41.87 29.56 68.60 2.03 43.90 16 4 H -0.26 -10.09 7.11 99.48 0.71 -9.39 16 5 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 6 H -0.25 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.57 -33.10 9.54 24.83 0.24 -32.87 16 8 H 0.09 4.57 7.85 -2.91 -0.02 4.55 16 9 C 0.55 32.19 7.59 86.36 0.66 32.85 16 10 O -0.63 -42.73 14.68 -4.33 -0.06 -42.79 16 11 N -0.73 -33.09 4.03 -450.39 -1.82 -34.91 16 12 C 0.17 6.40 2.47 44.25 0.11 6.51 16 13 H 0.09 4.01 7.57 -2.39 -0.02 4.00 16 14 C -0.07 -1.79 5.00 30.59 0.15 -1.63 16 15 C -0.17 -4.42 5.61 -10.79 -0.06 -4.48 16 16 C -0.18 -3.75 10.18 30.62 0.31 -3.44 16 17 C -0.16 -3.04 10.26 30.62 0.31 -2.72 16 18 C 0.46 18.09 7.66 71.24 0.55 18.64 16 19 O -0.55 -26.40 17.09 21.98 0.38 -26.02 16 20 O -0.51 -14.32 13.23 -51.47 -0.68 -15.00 16 21 H 0.27 15.53 8.29 -92.71 -0.77 14.76 16 22 H 0.40 15.89 8.58 -92.71 -0.80 15.10 16 23 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 24 H 0.11 2.27 7.73 -2.38 -0.02 2.25 16 25 H 0.09 2.75 7.69 -2.39 -0.02 2.73 16 26 H 0.11 1.94 8.03 -2.39 -0.02 1.92 16 27 H 0.09 1.92 8.14 -2.39 -0.02 1.90 16 28 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 29 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.42 8.10 9.10 -74.05 -0.67 7.43 16 Total: -1.00 -82.47 272.95 2.54 -79.92 By element: Atomic # 1 Polarization: 31.37 SS G_CDS: -0.29 Total: 31.07 kcal Atomic # 6 Polarization: 12.14 SS G_CDS: 2.73 Total: 14.87 kcal Atomic # 7 Polarization: -84.40 SS G_CDS: -1.56 Total: -85.96 kcal Atomic # 8 Polarization: -83.44 SS G_CDS: -0.37 Total: -83.81 kcal Atomic # 14 Polarization: 41.87 SS G_CDS: 2.03 Total: 43.90 kcal Total: -82.47 2.54 -79.92 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601060692.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.512 kcal (2) G-P(sol) polarization free energy of solvation -82.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.923 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds